Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006224

Physical Location & Seq

Genomic Coordinates Forward (+)

1704545 .. 1705132

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACGTCGTCCTCCGCTGCTTCTCGATTGAGTTTGGGGATAAGAACTGCTTCTTCCTCTACCGCCAGCGAAATCGTGGAGGCTCGGGGCCACATTCTAAGGGTCACCGGCCGGAAGGACCGCCACAGCAAGGTCTGCACCGCCAAAGGCCCCAGGGACCACCGCGTCCGGCTCGCCGCCCACACCGCCATTCAATTCTACAACGTGCAAGACTGGCTCGGATACGACCGGCCCAACAAGGCCGTCGATTGGCTCATCAAGAAAACCAAGGCCGCAATCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTCTGTTCAGACAACATCTTCTCTGACGGTGCCGATATCCGCCGTGCAGGACACGCAGAACGTGAGCCTCCATTTCTCGATGGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCGGCGAGGCGCAATGGTGGGTAGCAGCGGAGTGGCGGAGCTGGTGAATCAGAACAGCTCGAATTTTCTACAGGTGAGGATGGTGTGGAGGTCGAAGTTGTTAATCTTTGTCTGCCTACAATTGCCTCTGATCGAAGTTGGGCTAGAGGCCGAAGTTGTCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003014 GO:0003094 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0030145 GO:0031647 GO:0032501 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050821 GO:0051604 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0071704 GO:0097205 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

195

Amino Acids

21.26

Weight (kDa)

9.85

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	37 - 114	7.4e-28	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09300 AT1G09300
fragaria_vesca	FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800
malus_domestica	MD04G1191800.v1.1
prunus_persica	Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1
pyrus_communis	pycom12g19110 pycom12g19120
rosa_chinensis	RchiOBHm_Chr3g0457511
rosa_laevigata	RLG00000025217
rosa_multiflora	Rmu_sc0007404.1_g000015 Rmu_sc0038466.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421810
rosa_rugosa	Rorug03G0020600 Rorug03G0020900
rosa_samantha	Rh3AG081400 Rh3BG083500 Rh3CG083700 Rh3DG085100
rosa_wichuraiana	Rw3G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	340
AccII	CGCG	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	130, 249
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	286, 463, 480
AluI	AGCT	3 cut(s)	286, 463, 480
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	7 cut(s)	88, 109, 148, 230, 240, 270, 570
ApeKI	GCWGC	3 cut(s)	17, 286, 447
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	5 cut(s)	88, 118, 149, 157, 231
AsuHPI	GGTGA	3 cut(s)	97, 478, 508
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	118, 157
BanI	GGYRCC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	4, 273, 459
BccI	CCATC	2 cut(s)	385, 496
BceAI	ACGGC	3 cut(s)	227, 277, 338
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	566, 586
BfmI	CTRYAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	6 cut(s)	18, 177, 273, 287, 290, 448
BlsI	GCNGC	6 cut(s)	19, 178, 274, 288, 291, 449
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	118, 157
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	5 cut(s)	88, 118, 149, 157, 231
BmiI	GGNNCC	6 cut(s)	89, 151, 158, 299, 342, 402
BmrFI	CCNGG	1 cut(s)	154
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	152, 153, 267, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 249
Bse118I	RCCGGY	2 cut(s)	107, 228
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	4 cut(s)	152, 153, 267, 293
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	130, 249
BseMI	GCAATG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	218
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	4, 273, 459
BsgI	GTGCAG	2 cut(s)	121, 377
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	2 cut(s)	112, 229
BshFI	GGCC	7 cut(s)	90, 111, 150, 232, 242, 272, 572
BshNI	GGYRCC	1 cut(s)	340
BsiEI	CGRYCG	2 cut(s)	112, 229
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	4 cut(s)	108, 112, 169, 229
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	130, 249
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	7 cut(s)	90, 111, 150, 232, 242, 272, 572
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	552
BspANI	GGCC	7 cut(s)	90, 111, 150, 232, 242, 272, 572
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	6 cut(s)	89, 151, 158, 299, 342, 402
BspT107I	GGYRCC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	2 cut(s)	107, 228
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	2 cut(s)	107, 228
BssECI	CCNNGG	4 cut(s)	152, 153, 267, 293
BssMI	GATC	1 cut(s)	552
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	67, 174
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	293
BstEII	GGTNACC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	1 cut(s)	555
BstMBI	GATC	1 cut(s)	552
BstMCI	CGRYCG	2 cut(s)	112, 229
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 185, 214, 364
BstNI	CCWGG	1 cut(s)	154
BstPI	GGTNACC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	491
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	4, 273, 459
BstZI	CGGCCG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	7 cut(s)	90, 111, 150, 232, 242, 272, 572
BtgI	CCRYGG	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	507
Cac8I	GCNNGC	2 cut(s)	67, 174
CfoI	GCGC	1 cut(s)	434
Cfr10I	RCCGGY	2 cut(s)	107, 228
Cfr13I	GGNCC	5 cut(s)	88, 118, 149, 157, 231
CseI	GACGC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	554
DpnII	GATC	1 cut(s)	552
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
EciI	GGCGGA	2 cut(s)	340, 473
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	118, 157
Eco52I	CGGCCG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	84
Eco91I	GGTNACC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	1 cut(s)	170
Fnu4HI	GCNGC	6 cut(s)	18, 177, 273, 287, 290, 448
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	6 cut(s)	18, 177, 273, 287, 290, 448
FspBI	CTAG	2 cut(s)	566, 586
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	6 cut(s)	18, 177, 273, 287, 290, 448
HaeIII	GGCC	7 cut(s)	90, 111, 150, 232, 242, 272, 572
HapII	CCGG	4 cut(s)	108, 112, 169, 229
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	1 cut(s)	469
HpaII	CCGG	4 cut(s)	108, 112, 169, 229
HphI	GGTGA	3 cut(s)	97, 478, 508
Hpy188I	TCNGA	6 cut(s)	221, 321, 336, 405, 474, 552
Hpy188III	TCNNGA	3 cut(s)	24, 259, 388
Hpy99I	CGWCG	3 cut(s)	10, 248, 284
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	3 cut(s)	5, 204, 372
HpyCH4V	TGCA	3 cut(s)	138, 208, 358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 185, 214, 364
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	3 cut(s)	5, 204, 372
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	406, 460
Lsp1109I	GCAGC	3 cut(s)	4, 273, 459
MaeI	CTAG	2 cut(s)	566, 586
MaeII	ACGT	3 cut(s)	5, 204, 372
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	554
MboI	GATC	1 cut(s)	552
MboII	GAAGA	2 cut(s)	45, 321
MfeI	CAATTG	1 cut(s)	542
MluCI	AATT	4 cut(s)	194, 309, 484, 542
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	1 cut(s)	524
MspA1I	CMGCKG	2 cut(s)	17, 450
MspI	CCGG	4 cut(s)	108, 112, 169, 229
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	135, 185, 214, 364
NdeII	GATC	1 cut(s)	552
NlaIV	GGNNCC	6 cut(s)	89, 151, 158, 299, 342, 402
NmuCI	GTSAC	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	469
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	6 cut(s)	19, 178, 274, 288, 291, 449
Psp6I	CCWGG	1 cut(s)	152
PspEI	GGTNACC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	6 cut(s)	89, 151, 158, 299, 342, 402
PspPI	GGNCC	5 cut(s)	88, 118, 149, 157, 231
PsyI	GACNNNGTC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	6 cut(s)	18, 177, 273, 287, 290, 448
Sau3AI	GATC	1 cut(s)	552
Sau96I	GGNCC	5 cut(s)	88, 118, 149, 157, 231
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	9 cut(s)	8, 135, 207, 288, 375, 465, 482, 498, 515
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	2 cut(s)	118, 157
Sse9I	AATT	4 cut(s)	194, 309, 484, 542
SspMI	CTAG	2 cut(s)	566, 586
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	3 cut(s)	8, 207, 375
TaqI	TCGA	7 cut(s)	25, 246, 279, 389, 482, 515, 555
TasI	AATT	4 cut(s)	194, 309, 484, 542
TauI	GCSGC	3 cut(s)	179, 275, 292
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	3 cut(s)	17, 286, 447
Tsp45I	GTSAC	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	118, 157
XapI	RAATTY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	2 cut(s)	566, 586
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.