Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038466.1

Orthogroup ID

OG0006224

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 617

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038466.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 307 bp

atgactattggacgccgtgcattttgcaccaagaacattgttgacattgggcagccaactccttcatctcatccacagttgatgaaagaaggggagattacgcccggcatatctttggaggagtacatattgagaagaaaaaggttgttggatgtgctcccagagaatggcttggccatctttgcagctgcgccggtgaagatgatgaatgatgttgttccttatacgtatcggcaagatgctgattactcgtacattactggctgccagcaacctggtggcctggcggtcttgggtcatgaatgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003014 GO:0003094 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0030145 GO:0031647 GO:0032501 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050821 GO:0051604 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0071704 GO:0097205 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

6.06

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09300 AT1G09300
fragaria_vesca	FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800
malus_domestica	MD04G1191800.v1.1
prunus_persica	Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1
pyrus_communis	pycom12g19110 pycom12g19120
rosa_chinensis	RchiOBHm_Chr3g0457511
rosa_laevigata	RLG00000025217
rosa_multiflora	Rmu_sc0007404.1_g000015 Rmu_sc0038466.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421810
rosa_rugosa	Rorug03G0020600 Rorug03G0020900
rosa_samantha	Rh3AG081400 Rh3BG083500 Rh3CG083700 Rh3DG085100
rosa_wichuraiana	Rw3G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	2 cut(s)	125, 254
AfiI	CCNNNNNNNGG	1 cut(s)	167
AjnI	CCWGG	2 cut(s)	274, 282
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	1 cut(s)	159
AoxI	GGCC	2 cut(s)	174, 280
ApeKI	GCWGC	4 cut(s)	52, 185, 188, 264
AspLEI	GCGC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	64, 175, 197, 251
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	276, 284
BcnI	CCSGG	1 cut(s)	105
BisI	GCNGC	4 cut(s)	53, 186, 189, 265
BlsI	GCNGC	4 cut(s)	54, 187, 190, 266
Bme1390I	CCNGG	3 cut(s)	105, 276, 284
BmrFI	CCNGG	3 cut(s)	105, 276, 284
BmsI	GCATC	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	276, 284
BseGI	GGATG	2 cut(s)	70, 157
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	64, 175, 197, 251
BshFI	GGCC	2 cut(s)	176, 282
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	105, 194
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	2 cut(s)	176, 282
Bsp1286I	GDGCHC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	2 cut(s)	176, 282
BspHI	TCATGA	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	193
BssNI	GRCGYC	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	276, 284
Bst4CI	ACNGT	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	70, 157
BstHHI	GCGC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	2 cut(s)	276, 284
BstSCI	CCNGG	3 cut(s)	103, 274, 282
BstSNI	TACGTA	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	64, 175, 197, 251
BstXI	CCANNNNNNTGG	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	176, 282
BtsCI	GGATG	2 cut(s)	70, 157
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	193
CseI	GACGC	1 cut(s)	21
CsiI	ACCWGGT	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	124, 253
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	6 cut(s)	55, 171, 176, 188, 264, 282
CviKI_1	RGCY	6 cut(s)	55, 171, 176, 188, 264, 282
CviQI	GTAC	2 cut(s)	124, 253
EaeI	YGGCCR	1 cut(s)	174
Eco105I	TACGTA	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	274, 282
FaeI	CATG	1 cut(s)	302
FaiI	YATR	4 cut(s)	110, 128, 225, 300
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	53, 186, 189, 265
FokI	GGATG	2 cut(s)	57, 164
Fsp4HI	GCNGC	4 cut(s)	53, 186, 189, 265
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	53, 186, 189, 265
HaeIII	GGCC	2 cut(s)	176, 282
HapII	CCGG	2 cut(s)	105, 194
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	105, 194
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	72, 83
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	20, 27, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	9 cut(s)	118, 174, 207, 246, 261, 269, 281, 288, 296
Lsp1109I	GCAGC	4 cut(s)	64, 175, 197, 251
LweI	GCATC	1 cut(s)	229
MabI	ACCWGGT	1 cut(s)	274
MaeII	ACGT	1 cut(s)	227
MboII	GAAGA	2 cut(s)	147, 211
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	1 cut(s)	112
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	105, 194
MspR9I	CCNGG	3 cut(s)	105, 276, 284
MvaI	CCWGG	2 cut(s)	276, 284
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	105
NlaIII	CATG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	54, 187, 190, 266
Ppu21I	YACGTR	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	274, 282
PspGI	CCWGG	2 cut(s)	274, 282
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	125, 254
RsaNI	GTAC	2 cut(s)	124, 253
SatI	GCNGC	4 cut(s)	53, 186, 189, 265
ScrFI	CCNGG	3 cut(s)	105, 276, 284
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	146, 190, 230, 277
SexAI	ACCWGGT	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	229
SgrAI	CRCCGGYG	1 cut(s)	193
SnaBI	TACGTA	1 cut(s)	228
SsiI	CCGC	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	103, 274, 282
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	123
TseI	GCWGC	4 cut(s)	52, 185, 188, 264
TspDTI	ATGAA	3 cut(s)	54, 98, 221
Van91I	CCANNNNNTGG	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.