AT1G09570

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007386
Physical Location & Seq
Reverse (-)
3095160 .. 3100819
5660 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09570.1

Sequence Viewer

Length: 3369 bp
ATGTCAGGCTCTAGGCCGACTCAGTCCTCTGAGGGCTCAAGGCGATCAAGGCACAGCGCTAGGATCATTGCGCAGACCACTGTAGATGCGAAACTCCATGCTGATTTTGAGGAGTCAGGCAGCTCCTTTGATTACTCAACCTCAGTGCGTGTCACTGGCCCGGTTGTGGAGAATCAGCCACCAAGGTCTGACAAAGTTACCACGACTTATCTTCATCATATACAGAAGGGAAAGCTGATTCAGCCCTTCGGTTGTTTACTTGCCTTGGATGAGAAGACCTTCAAAGTTATTGCATACAGCGAGAATGCATCTGAGCTGTTGACAATGGCCAGTCATGCAGTTCCTAGTGTTGGCGAACACCCTGTTCTAGGCATTGGGACAGATATAAGGAGTCTTTTCACTGCTCCTAGTGCGTCTGCATTGCAGAAAGCCCTTGGATTTGGAGATGTCTCTCTTTTGAATCCCATTCTTGTGCACTGCAGGACTTCTGCAAAGCCCTTTTATGCGATTATCCACAGGGTTACAGGGAGCATCATCATCGACTTTGAACCCGTGAAGCCTTATGAAGTCCCCATGACAGCTGCTGGTGCCTTACAATCATACAAGCTCGCTGCCAAAGCAATCACTAGGCTGCAATCTTTACCCAGCGGGAGTATGGAAAGGCTTTGTGATACAATGGTTCAAGAGGTTTTTGAACTCACGGGGTATGACAGGGTGATGGCTTATAAGTTTCATGAAGATGATCACGGTGAGGTTGTCTCCGAGGTTACAAAACCTGGGCTGGAGCCTTATCTTGGGCTGCATTATCCTGCCACCGACATCCCTCAAGCAGCCCGTTTTCTGTTTATGAAGAACAAGGTCCGGATGATAGTTGATTGCAATGCAAAACATGCTAGGGTGCTTCAAGATGAAAAGCTTTCCTTTGACCTTACCTTGTGTGGCTCCACCCTTAGAGCACCGCACAGCTGCCATTTGCAGTACATGGCCAACATGGATTCAATTGCATCTCTGGTTATGGCGGTTGTAGTTAACGAGGAAGATGGAGAAGGGGATGCTCCTGATGCTACTACACAGCCTCAAAAGAGAAAGAGACTATGGGGTTTAGTGGTTTGTCACAATACGACTCCGAGGTTTGTTCCATTTCCTCTCAGGTATGCCTGTGAGTTTCTAGCTCAAGTGTTTGCCATACACGTCAATAAGGAGGTGGAACTCGATAACCAGATGGTGGAGAAGAACATTTTGCGCACGCAGACACTCTTGTGCGATATGCTGATGCGTGATGCTCCACTGGGTATTGTGTCGCAAAGCCCCAACATAATGGACCTTGTGAAATGTGATGGAGCAGCTCTCTTGTATAAAGACAAGATATGGAAACTGGGAACAACTCCAAGTGAGTTCCACCTGCAGGAGATAGCTTCATGGTTGTGTGAATACCACATGGATTCAACGGGTTTGAGCACTGATAGTTTGCATGACGCCGGGTTTCCTAGGGCTCTATCTCTCGGGGATTCGGTATGTGGGATGGCAGCTGTGAGGATATCATCGAAAGACATGATTTTCTGGTTCCGTTCTCATACCGCTGGTGAAGTGAGATGGGGAGGTGCGAAGCATGATCCAGATGATAGGGATGATGCAAGGAGAATGCACCCAAGGTCATCGTTCAAGGCTTTCCTTGAAGTGGTCAAGACAAGGAGTTTACCTTGGAAGGACTATGAGATGGATGCCATACACTCCTTGCAACTTATTTTGAGGAATGCTTTCAAGGATAGTGAAACTACTGATGTGAATACAAAGGTCATTTACTCGAAGCTAAATGATCTCAAAATTGATGGTATACAAGAACTAGAAGCTGTGACCAGTGAGATGGTTCGTTTAATTGAGACTGCTACGGTGCCAATATTGGCGGTTGATTCTGATGGACTGGTTAATGGTTGGAACACGAAAATTGCTGAGCTGACTGGTCTTTCGGTTGATGAAGCAATCGGGAAGCATTTCCTCACACTTGTTGAAGATTCTTCAGTGGAAATCGTTAAAAGGATGCTAGAGAACGCATTAGAAGGAACTGAGGAGCAGAATGTCCAGTTTGAGATCAAGACACATCTGTCCAGGGCTGATGCTGGGCCAATAAGTTTAGTTGTAAATGCATGCGCAAGTAGAGATCTCCATGAAAACGTGGTTGGGGTGTGTTTTGTAGCCCATGATCTTACTGGCCAGAAGACTGTGATGGACAAGTTTACGCGGATTGAAGGTGATTACAAGGCAATCATCCAAAATCCAAACCCGCTGATCCCGCCAATATTTGGTACCGATGAGTTTGGATGGTGCACAGAGTGGAATCCAGCAATGTCAAAGTTAACCGGTTTGAAGCGAGAGGAAGTGATTGACAAAATGCTCTTAGGAGAAGTATTTGGGACGCAGAAGTCATGTTGTCGTCTAAAGAATCAAGAAGCCTTTGTAAACCTTGGGATTGTGCTGAACAATGCTGTGACCAGTCAAGATCCAGAGAAAGTATCGTTTGCTTTCTTTACAAGAGGTGGCAAGTATGTGGAGTGTCTGTTGTGTGTGAGTAAGAAACTGGACAGGGAAGGTGTAGTGACAGGTGTCTTCTGTTTCCTGCAACTTGCCAGCCATGAGCTGCAGCAAGCGCTCCATGTTCAACGTTTAGCTGAGCGAACCGCAGTGAAGAGACTAAAGGCTCTAGCATACATAAAAAGACAGATCAGGAATCCGCTATCTGGGATCATGTTTACAAGGAAAATGATAGAGGGTACTGAATTAGGACCAGAGCAAAGACGGATTTTGCAAACTAGCGCGTTATGTCAGAAGCAACTAAGCAAGATCCTCGATGATTCGGATCTTGAAAGCATCATTGAAGGATGCTTGGATTTGGAAATGAAAGAATTCACCTTAAATGAAGTGTTGACTGCTTCCACAAGTCAAGTAATGATGAAGAGTAACGGAAAGAGTGTTCGGATAACAAATGAGACCGGAGAAGAAGTAATGTCTGACACTTTGTATGGAGACAGTATTAGGCTTCAACAAGTCTTGGCAGATTTCATGCTGATGGCTGTAAACTTTACACCATCCGGAGGTCAGCTAACTGTTTCAGCTTCCCTGAGGAAGGATCAGCTCGGGCGTTCTGTGCATCTTGCTAATCTAGAGATCAGGTTAACGCATACCGGAGCTGGGATACCTGAGTTTTTACTAAACCAAATGTTTGGGACTGAGGAAGATGTGTCAGAAGAAGGATTGAGCTTAATGGTTAGCCGGAAACTGGTGAAGCTGATGAATGGAGATGTTCAGTACTTGAGACAAGCTGGGAAATCAAGTTTCATTATCACTGCGGAACTCGCTGCAGCAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1122

Amino Acids

124.5

Weight (kDa)

5.91

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 70 - 185 2.2e-35 PAS fold
GAF PF01590 219 - 400 1.1e-15 GAF domain
PHY PF00360 415 - 590 9.5e-59 Phytochrome region
PAS PF00989 621 - 734 5.4e-23 PAS fold
PAS_4 PF08448 629 - 739 1e-08 PAS fold
PAS_9 PF13426 633 - 736 4.2e-06 PAS domain
PAS PF00989 751 - 873 2.5e-19 PAS fold
HisKA PF00512 896 - 956 1.9e-09 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1007 - 1116 1.4e-12 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AarI CACCTGC 1 cut(s) 1410
AasI GACNNNNNNGTC 2 cut(s) 2101, 2419
Acc16I TGCGCA 3 cut(s) 72, 1244, 2149
Acc36I ACCTGC 1 cut(s) 1410
Acc65I GGTACC 1 cut(s) 2303
AccB1I GGYRCC 3 cut(s) 587, 1891, 2303
AccB7I CCANNNNNTGG 2 cut(s) 1225, 2300
AccI GTMKAC 1 cut(s) 1834
AccII CGCG 2 cut(s) 2239, 2813
AccIII TCCGGA 2 cut(s) 861, 3086
AclI AACGTT 1 cut(s) 2659
AclWI GGATC 8 cut(s) 71, 1607, 2281, 2492, 2747, 2833, 2862, 3132
AcoI YGGCCR 3 cut(s) 327, 984, 2209
AcsI RAATTY 1 cut(s) 2900
AcuI CTGAAG 1 cut(s) 2001
AcyI GRCGYC 1 cut(s) 1476
AdeI CACNNNGTG 1 cut(s) 2331
AfaI GTAC 4 cut(s) 980, 2305, 2770, 3305
AfeI AGCGCT 2 cut(s) 58, 2646
AflIII ACRYGT 1 cut(s) 1189
AgeI ACCGGT 1 cut(s) 2357
AjiI CACGTC 1 cut(s) 1192
AjnI CCWGG 2 cut(s) 775, 2105
AjuI GAANNNNNNNTTGG 2 cut(s) 2160, 2192
AleI CACNNNNGTG 1 cut(s) 1258
AloI GAACNNNNNNTCC 2 cut(s) 2952, 2984
Alw21I GWGCWC 4 cut(s) 477, 958, 1460, 2327
Alw26I GTCTC 8 cut(s) 454, 763, 1084, 1874, 2680, 2978, 3015, 3304
Alw44I GTGCAC 2 cut(s) 473, 2323
AlwI GGATC 8 cut(s) 71, 1607, 2281, 2492, 2747, 2833, 2862, 3132
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 2 cut(s) 1502, 3131
Aor13HI TCCGGA 2 cut(s) 861, 3086
Aor51HI AGCGCT 2 cut(s) 58, 2646
AoxI GGCC 6 cut(s) 14, 157, 327, 984, 2120, 2209
ApaLI GTGCAC 2 cut(s) 473, 2323
ApoI RAATTY 1 cut(s) 2900
ArsI GACNNNNNNTTYG 2 cut(s) 1948, 1980
AsiGI ACCGGT 1 cut(s) 2357
Asp700I GAANNNNTTC 4 cut(s) 278, 1757, 1991, 2900
Asp718I GGTACC 1 cut(s) 2303
AspA2I CCTAGG 1 cut(s) 1487
AspLEI GCGC 6 cut(s) 59, 73, 1245, 2150, 2647, 2813
AspS9I GGNCC 5 cut(s) 158, 859, 1321, 2120, 2780
AsuC2I CCSGG 2 cut(s) 161, 1480
AsuHPI GGTGA 6 cut(s) 727, 761, 1595, 2261, 2896, 3289
AvaI CYCGRG 2 cut(s) 1502, 3131
AvaII GGWCC 3 cut(s) 859, 1321, 2780
AvrII CCTAGG 1 cut(s) 1487
AxyI CCTNAGG 1 cut(s) 3116
BaeGI GKGCMC 2 cut(s) 477, 2327
BaeI ACNNNNGTAYC 4 cut(s) 663, 696, 3182, 3215
BalI TGGCCA 3 cut(s) 329, 986, 2211
BanI GGYRCC 3 cut(s) 587, 1891, 2303
BanII GRGCYC 2 cut(s) 38, 1495
BbsI GAAGAC 3 cut(s) 281, 2222, 2596
Bbv12I GWGCWC 4 cut(s) 477, 958, 1460, 2327
BcgI CGANNNNNNTGC 4 cut(s) 520, 554, 2824, 2858
BciT130I CCWGG 2 cut(s) 777, 2107
BciVI GTATCC 1 cut(s) 3183
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 2 cut(s) 161, 1480
BcoDI GTCTC 8 cut(s) 454, 763, 1084, 1874, 2680, 2978, 3015, 3304
BfmI CTRYAG 5 cut(s) 81, 478, 1403, 2636, 3354
BfoI RGCGCY 2 cut(s) 60, 2648
BfuAI ACCTGC 1 cut(s) 1410
BfuI GTATCC 1 cut(s) 3183
BglII AGATCT 1 cut(s) 2158
BlnI CCTAGG 1 cut(s) 1487
BlpI GCTNAGC 2 cut(s) 1950, 2667
BmcAI AGTACT 1 cut(s) 3305
Bme1390I CCNGG 4 cut(s) 161, 777, 1480, 2107
Bme18I GGWCC 3 cut(s) 859, 1321, 2780
BmeT110I CYCGRG 2 cut(s) 1502, 3131
BmgBI CACGTC 1 cut(s) 1192
BmgT120I GGNCC 5 cut(s) 158, 859, 1321, 2120, 2780
BmiI GGNNCC 6 cut(s) 589, 786, 943, 1565, 1893, 2305
BmrFI CCNGG 4 cut(s) 161, 777, 1480, 2107
BmrI ACTGGG 2 cut(s) 1298, 1385
BmuI ACTGGG 2 cut(s) 1298, 1385
BoxI GACNNNNGTC 1 cut(s) 2600
BpiI GAAGAC 3 cut(s) 281, 2222, 2596
BplI GAGNNNNNCTC 4 cut(s) 743, 775, 1332, 1364
BpmI CTGGAG 1 cut(s) 803
Bpu1102I GCTNAGC 2 cut(s) 1950, 2667
BpuEI CTTGAG 4 cut(s) 22, 810, 1158, 3328
BpuMI CCSGG 2 cut(s) 161, 1480
BsaBI GATNNNNATC 1 cut(s) 2853
BsaHI GRCGYC 1 cut(s) 1476
BsaI GGTCTC 1 cut(s) 2978
BsaWI WCCGGW 5 cut(s) 861, 2357, 2987, 3086, 3179
BsaXI ACNNNNNCTCC 4 cut(s) 2540, 2570, 2982, 3012
Bse118I RCCGGY 1 cut(s) 2357
Bse21I CCTNAGG 1 cut(s) 3116
Bse3DI GCAATG 4 cut(s) 66, 419, 886, 2349
Bse8I GATNNNNATC 1 cut(s) 2853
BseAI TCCGGA 2 cut(s) 861, 3086
BseBI CCWGG 2 cut(s) 777, 2107
BseJI GATNNNNATC 1 cut(s) 2853
BseMI GCAATG 4 cut(s) 66, 419, 886, 2349
BseRI GAGGAG 2 cut(s) 125, 2081
BseSI GKGCMC 2 cut(s) 477, 2327
BseYI CCCAGC 4 cut(s) 644, 2117, 3185, 3317
Bsh1236I CGCG 2 cut(s) 2239, 2813
BshFI GGCC 6 cut(s) 16, 159, 329, 986, 2122, 2211
BshNI GGYRCC 3 cut(s) 587, 1891, 2303
BshTI ACCGGT 1 cut(s) 2357
BsiHKAI GWGCWC 4 cut(s) 477, 958, 1460, 2327
BsiHKCI CYCGRG 2 cut(s) 1502, 3131
BsiSI CCGG 8 cut(s) 161, 862, 1479, 2358, 2988, 3087, 3180, 3268
BslFI GGGAC 4 cut(s) 391, 554, 2425, 3235
BsmAI GTCTC 8 cut(s) 454, 763, 1084, 1874, 2680, 2978, 3015, 3304
BsmFI GGGAC 4 cut(s) 391, 554, 2425, 3235
BsmI GAATGC 3 cut(s) 310, 1647, 1759
BsnI GGCC 6 cut(s) 16, 159, 329, 986, 2122, 2211
Bso31I GGTCTC 1 cut(s) 2978
BsoBI CYCGRG 2 cut(s) 1502, 3131
Bsp1286I GDGCHC 6 cut(s) 38, 477, 958, 1460, 1495, 2327
Bsp13I TCCGGA 2 cut(s) 861, 3086
Bsp1720I GCTNAGC 2 cut(s) 1950, 2667
BspANI GGCC 6 cut(s) 16, 159, 329, 986, 2122, 2211
BspEI TCCGGA 2 cut(s) 861, 3086
BspFNI CGCG 2 cut(s) 2239, 2813
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 6 cut(s) 589, 786, 943, 1565, 1893, 2305
BspMAI CTGCAG 4 cut(s) 482, 1407, 2640, 3358
BspMI ACCTGC 1 cut(s) 1410
BspPI GGATC 8 cut(s) 71, 1607, 2281, 2492, 2747, 2833, 2862, 3132
BspT107I GGYRCC 3 cut(s) 587, 1891, 2303
BspTNI GGTCTC 1 cut(s) 2978
BsrDI GCAATG 4 cut(s) 66, 419, 886, 2349
BsrFI RCCGGY 1 cut(s) 2357
BssAI RCCGGY 1 cut(s) 2357
BssNAI GTATAC 1 cut(s) 1835
BssNI GRCGYC 1 cut(s) 1476
BssT1I CCWWGG 7 cut(s) 182, 264, 433, 1487, 1649, 1700, 2461
Bst1107I GTATAC 1 cut(s) 1835
Bst2UI CCWGG 2 cut(s) 777, 2107
Bst4CI ACNGT 6 cut(s) 82, 749, 1891, 2221, 3026, 3103
Bst6I CTCTTC 2 cut(s) 2678, 2945
BstACI GRCGYC 1 cut(s) 1476
BstAPI GCANNNNNTGC 1 cut(s) 890
BstC8I GCNNGC 5 cut(s) 609, 1247, 2146, 2626, 2643
BstENI CCTNNNNNAGG 2 cut(s) 366, 3119
BstFNI CGCG 2 cut(s) 2239, 2813
BstH2I RGCGCY 2 cut(s) 60, 2648
BstHHI GCGC 6 cut(s) 59, 73, 1245, 2150, 2647, 2813
BstMAI GTCTC 8 cut(s) 454, 763, 1084, 1874, 2680, 2978, 3015, 3304
BstNI CCWGG 2 cut(s) 777, 2107
BstNSI RCATGY 2 cut(s) 893, 2148
BstPAI GACNNNNGTC 1 cut(s) 2600
BstSCI CCNGG 4 cut(s) 159, 775, 1478, 2105
BstSFI CTRYAG 5 cut(s) 81, 478, 1403, 2636, 3354
BstSLI GKGCMC 2 cut(s) 477, 2327
BstUI CGCG 2 cut(s) 2239, 2813
BstV2I GAAGAC 3 cut(s) 281, 2222, 2596
BstX2I RGATCY 4 cut(s) 2158, 2497, 2838, 2854
BstXI CCANNNNNNTGG 3 cut(s) 1318, 1864, 3218
BstYI RGATCY 4 cut(s) 2158, 2497, 2838, 2854
BstZ17I GTATAC 1 cut(s) 1835
Bsu36I CCTNAGG 1 cut(s) 3116
BsuI GTATCC 1 cut(s) 3183
BsuRI GGCC 6 cut(s) 16, 159, 329, 986, 2122, 2211
BtrI CACGTC 1 cut(s) 1192
BtsI GCAGTG 4 cut(s) 399, 475, 2685, 3339
BveI ACCTGC 1 cut(s) 1410
Cac8I GCNNGC 5 cut(s) 609, 1247, 2146, 2626, 2643
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 733
CfoI GCGC 6 cut(s) 59, 73, 1245, 2150, 2647, 2813
Cfr10I RCCGGY 1 cut(s) 2357
Cfr13I GGNCC 5 cut(s) 158, 859, 1321, 2120, 2780
CseI GACGC 3 cut(s) 402, 1484, 2422
Csp6I GTAC 4 cut(s) 979, 2304, 2769, 3304
CspAI ACCGGT 1 cut(s) 2357
CviQI GTAC 4 cut(s) 979, 2304, 2769, 3304
DraIII CACNNNGTG 1 cut(s) 2331
DrdI GACNNNNNNGTC 2 cut(s) 2101, 2419
DseDI GACNNNNNNGTC 2 cut(s) 2101, 2419
EaeI YGGCCR 3 cut(s) 327, 984, 2209
Eam1104I CTCTTC 2 cut(s) 2678, 2945
EarI CTCTTC 2 cut(s) 2678, 2945
Eco130I CCWWGG 7 cut(s) 182, 264, 433, 1487, 1649, 1700, 2461
Eco24I GRGCYC 2 cut(s) 38, 1495
Eco31I GGTCTC 1 cut(s) 2978
Eco32I GATATC 1 cut(s) 1539
Eco47I GGWCC 3 cut(s) 859, 1321, 2780
Eco47III AGCGCT 2 cut(s) 58, 2646
Eco57I CTGAAG 1 cut(s) 2001
Eco81I CCTNAGG 1 cut(s) 3116
Eco88I CYCGRG 2 cut(s) 1502, 3131
EcoNI CCTNNNNNAGG 2 cut(s) 366, 3119
EcoRI GAATTC 1 cut(s) 2900
EcoRII CCWGG 2 cut(s) 775, 2105
EcoRV GATATC 1 cut(s) 1539
EcoT14I CCWWGG 7 cut(s) 182, 264, 433, 1487, 1649, 1700, 2461
EcoT22I ATGCAT 2 cut(s) 310, 2146
EcoT38I GRGCYC 2 cut(s) 38, 1495
ErhI CCWWGG 7 cut(s) 182, 264, 433, 1487, 1649, 1700, 2461
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 4 cut(s) 391, 554, 2425, 3235
FauI CCCGC 3 cut(s) 641, 2289, 2298
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 1 cut(s) 1834
FriOI GRGCYC 2 cut(s) 38, 1495
FspI TGCGCA 3 cut(s) 72, 1244, 2149
GlaI GCGC 6 cut(s) 58, 72, 1244, 2149, 2646, 2812
GsaI CCCAGC 4 cut(s) 648, 2121, 3189, 3321
GsuI CTGGAG 1 cut(s) 803
HaeII RGCGCY 2 cut(s) 60, 2648
HaeIII GGCC 6 cut(s) 16, 159, 329, 986, 2122, 2211
HapII CCGG 8 cut(s) 161, 862, 1479, 2358, 2988, 3087, 3180, 3268
HgaI GACGC 3 cut(s) 402, 1484, 2422
HhaI GCGC 6 cut(s) 59, 73, 1245, 2150, 2647, 2813
Hin1I GRCGYC 1 cut(s) 1476
Hin6I GCGC 6 cut(s) 57, 71, 1243, 2148, 2645, 2811
HinP1I GCGC 6 cut(s) 57, 71, 1243, 2148, 2645, 2811
HincII GTYRAC 5 cut(s) 321, 1030, 2355, 2922, 3171
HindII GTYRAC 5 cut(s) 321, 1030, 2355, 2922, 3171
HindIII AAGCTT 1 cut(s) 914
HpaI GTTAAC 3 cut(s) 1030, 2355, 3171
HpaII CCGG 8 cut(s) 161, 862, 1479, 2358, 2988, 3087, 3180, 3268
HphI GGTGA 6 cut(s) 727, 761, 1595, 2261, 2896, 3289
HpyCH4III ACNGT 6 cut(s) 82, 749, 1891, 2221, 3026, 3103
HpyCH4IV ACGT 3 cut(s) 1191, 2172, 2659
HpySE526I ACGT 3 cut(s) 1191, 2172, 2659
Hsp92I GRCGYC 1 cut(s) 1476
HspAI GCGC 6 cut(s) 57, 71, 1243, 2148, 2645, 2811
Kpn2I TCCGGA 2 cut(s) 861, 3086
KpnI GGTACC 1 cut(s) 2307
Ksp22I TGATCA 1 cut(s) 742
KspAI GTTAAC 3 cut(s) 1030, 2355, 3171
MaeII ACGT 3 cut(s) 1191, 2172, 2659
MaeIII GTNAC 9 cut(s) 151, 196, 520, 766, 1112, 1852, 2485, 2593, 2954
MfeI CAATTG 1 cut(s) 999
MflI RGATCY 4 cut(s) 2158, 2497, 2838, 2854
MhlI GDGCHC 6 cut(s) 38, 477, 958, 1460, 1495, 2327
MlsI TGGCCA 3 cut(s) 329, 986, 2211
MluCI AATT 6 cut(s) 999, 1824, 1875, 1944, 2774, 2900
MluNI TGGCCA 3 cut(s) 329, 986, 2211
MlyI GAGTC 4 cut(s) 13, 122, 400, 1117
MmeI TCCRAC 1 cut(s) 1913
Mox20I TGGCCA 3 cut(s) 329, 986, 2211
Mph1103I ATGCAT 2 cut(s) 310, 2146
MroI TCCGGA 2 cut(s) 861, 3086
MroXI GAANNNNTTC 4 cut(s) 278, 1757, 1991, 2900
MscI TGGCCA 3 cut(s) 329, 986, 2211
MseI TTAA 8 cut(s) 1029, 1874, 1926, 2031, 2354, 2909, 3170, 3257
MslI CAYNNNNRTG 5 cut(s) 470, 738, 1258, 1423, 3062
Msp20I TGGCCA 3 cut(s) 329, 986, 2211
MspA1I CMGCKG 6 cut(s) 581, 648, 966, 1529, 1580, 2284
MspI CCGG 8 cut(s) 161, 862, 1479, 2358, 2988, 3087, 3180, 3268
MspR9I CCNGG 4 cut(s) 161, 777, 1480, 2107
MunI CAATTG 1 cut(s) 999
Mva1269I GAATGC 3 cut(s) 310, 1647, 1759
MvaI CCWGG 2 cut(s) 777, 2107
MvnI CGCG 2 cut(s) 2239, 2813
NciI CCSGG 2 cut(s) 161, 1480
NlaIV GGNNCC 6 cut(s) 589, 786, 943, 1565, 1893, 2305
NmuCI GTSAC 5 cut(s) 151, 1112, 1852, 2485, 2593
NsbI TGCGCA 3 cut(s) 72, 1244, 2149
NsiI ATGCAT 2 cut(s) 310, 2146
NspI RCATGY 2 cut(s) 893, 2148
OliI CACNNNNGTG 1 cut(s) 1258
PaeI GCATGC 1 cut(s) 2148
PagI TCATGA 1 cut(s) 733
PaqCI CACCTGC 1 cut(s) 1410
PctI GAATGC 3 cut(s) 310, 1647, 1759
PdmI GAANNNNTTC 4 cut(s) 278, 1757, 1991, 2900
PflFI GACNNNGTC 1 cut(s) 22
PflMI CCANNNNNTGG 2 cut(s) 1225, 2300
PinAI ACCGGT 1 cut(s) 2357
PleI GAGTC 4 cut(s) 13, 121, 399, 1117
PpsI GAGTC 4 cut(s) 13, 121, 399, 1117
PshAI GACNNNNGTC 1 cut(s) 2600
PsiI TTATAA 1 cut(s) 726
Psp1406I AACGTT 1 cut(s) 2659
Psp6I CCWGG 2 cut(s) 775, 2105
PspFI CCCAGC 4 cut(s) 644, 2117, 3185, 3317
PspGI CCWGG 2 cut(s) 775, 2105
PspN4I GGNNCC 6 cut(s) 589, 786, 943, 1565, 1893, 2305
PspPI GGNCC 5 cut(s) 158, 859, 1321, 2120, 2780
PstI CTGCAG 4 cut(s) 482, 1407, 2640, 3358
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 4 cut(s) 2158, 2497, 2838, 2854
PsyI GACNNNGTC 1 cut(s) 22
PvuII CAGCTG 3 cut(s) 581, 966, 1529
RsaI GTAC 4 cut(s) 980, 2305, 2770, 3305
RsaNI GTAC 4 cut(s) 979, 2304, 2769, 3304
RseI CAYNNNNRTG 5 cut(s) 470, 738, 1258, 1423, 3062
SaqAI TTAA 8 cut(s) 1029, 1874, 1926, 2031, 2354, 2909, 3170, 3257
Sau96I GGNCC 5 cut(s) 158, 859, 1321, 2120, 2780
SbfI CCTGCAGG 1 cut(s) 1407
ScaI AGTACT 1 cut(s) 3305
SchI GAGTC 4 cut(s) 13, 122, 400, 1117
ScrFI CCNGG 4 cut(s) 161, 777, 1480, 2107
SdaI CCTGCAGG 1 cut(s) 1407
SduI GDGCHC 6 cut(s) 38, 477, 958, 1460, 1495, 2327
SfcI CTRYAG 5 cut(s) 81, 478, 1403, 2636, 3354
SinI GGWCC 3 cut(s) 859, 1321, 2780
SmiMI CAYNNNNRTG 5 cut(s) 470, 738, 1258, 1423, 3062
SmlI CTYRAG 4 cut(s) 37, 825, 1173, 3307
SmoI CTYRAG 4 cut(s) 37, 825, 1173, 3307
SphI GCATGC 1 cut(s) 2148
Sse8387I CCTGCAGG 1 cut(s) 1407
Sse9I AATT 6 cut(s) 999, 1824, 1875, 1944, 2774, 2900
SspI AATATT 2 cut(s) 1899, 2298
StyD4I CCNGG 4 cut(s) 159, 775, 1478, 2105
StyI CCWWGG 7 cut(s) 182, 264, 433, 1487, 1649, 1700, 2461
TaaI ACNGT 6 cut(s) 82, 749, 1891, 2221, 3026, 3103
TaiI ACGT 3 cut(s) 1194, 2175, 2662
TaqI TCGA 5 cut(s) 540, 1212, 1544, 1805, 2844
TasI AATT 6 cut(s) 999, 1824, 1875, 1944, 2774, 2900
TatI WGTACW 2 cut(s) 978, 3303
Tru1I TTAA 8 cut(s) 1029, 1874, 1926, 2031, 2354, 2909, 3170, 3257
Tru9I TTAA 8 cut(s) 1029, 1874, 1926, 2031, 2354, 2909, 3170, 3257
TseFI GTSAC 5 cut(s) 151, 1112, 1852, 2485, 2593
Tsp45I GTSAC 5 cut(s) 151, 1112, 1852, 2485, 2593
TspGWI ACGGA 3 cut(s) 1556, 2809, 2973
Tth111I GACNNNGTC 1 cut(s) 22
Van91I CCANNNNNTGG 2 cut(s) 1225, 2300
VneI GTGCAC 2 cut(s) 473, 2323
VpaK11BI GGWCC 3 cut(s) 859, 1321, 2780
XagI CCTNNNNNAGG 2 cut(s) 366, 3119
XapI RAATTY 1 cut(s) 2900
XbaI TCTAGA 1 cut(s) 3157
XceI RCATGY 2 cut(s) 893, 2148
XcmI CCANNNNNNNNNTGG 2 cut(s) 652, 2204
XmaJI CCTAGG 1 cut(s) 1487
XmiI GTMKAC 1 cut(s) 1834
XmnI GAANNNNTTC 4 cut(s) 278, 1757, 1991, 2900
ZrmI AGTACT 1 cut(s) 3305
Zsp2I ATGCAT 2 cut(s) 310, 2146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.