Rorug03G0032700

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007386
Physical Location & Seq
Forward (+)
2598719 .. 2599330
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0032700.1

Sequence Viewer

Length: 612 bp
ATGGATATGGAAATACTTAGCTGGAATTGCAGAGGGATCTGCAATGACACGACAACTCGGGCTTTGAAAAATCTCATCTCTCAAAACCGGCCTCAGATAATCTTTTTATGTGAAACCAAGATCAGACGTTTGACTGATTTTATTGCACTCCGGTCGGCGCTAGGGTTTGCGCACTCAAAGGAGGTTTTGAGTGATGGTCAGTCCGGCGGGCTGGGGATGTTCTGGACGGAGGATGTGCAGGTCCAGGTTGGTACTTTTTCTCCTCACCACATCGATATCATGATTGACGGAGGATCTGGGAATCCTAGATGGCGGCTTACAGGTTTCTACGGTTTCTCCAGAACATCCGAAAAGGACCGGTCATGGCAGCTTTTGCGTGATCTGAGGGACCTTGACTCTTTGTCGTGGGTTGTCATAGGAGATTTCAATGAGATCCTTAACAATGGAGAGAAGAAGGATGGTCCGGCTAGGGCCGAGAGACAGATGAGAAGTTTTCGTGAAGCCTTAGGTTATTGTGAACTGCTTGATTTGGGATTTCAAGGGCCGCAGTCGACATGGTGGAACTCGGAAACCCAATTACGTCTTGATAGAGCAGTGTGTACAGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

203

Amino Acids

23.18

Weight (kDa)

5.67

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 201 2.8e-17 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 551
AciI CCGC 3 cut(s) 207, 313, 545
AclWI GGATC 3 cut(s) 44, 301, 427
AfaI GTAC 2 cut(s) 253, 601
AgeI ACCGGT 1 cut(s) 357
AgsI TTSAA 3 cut(s) 67, 427, 539
AhdI GACNNNNNGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 2 cut(s) 21, 370
AluI AGCT 2 cut(s) 21, 370
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 3 cut(s) 44, 301, 427
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 3 cut(s) 89, 471, 542
ApeKI GCWGC 1 cut(s) 367
AsiGI ACCGGT 1 cut(s) 357
AspLEI GCGC 2 cut(s) 160, 172
AspS9I GGNCC 6 cut(s) 241, 355, 388, 461, 471, 542
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 4 cut(s) 241, 355, 388, 461
AxyI CCTNAGG 1 cut(s) 505
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 188, 303, 452
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 4 cut(s) 161, 306, 468, 610
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 3 cut(s) 314, 368, 545
BlsI GCNGC 3 cut(s) 315, 369, 546
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 4 cut(s) 241, 355, 388, 461
BmeRI GACNNNNNGTC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 6 cut(s) 241, 355, 388, 461, 471, 542
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 150, 357
BsaXI ACNNNNNCTCC 4 cut(s) 244, 274, 320, 350
Bse118I RCCGGY 2 cut(s) 87, 357
Bse21I CCTNAGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 4 cut(s) 222, 238, 344, 463
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 107, 374
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 3 cut(s) 91, 473, 544
BshTI ACCGGT 1 cut(s) 357
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 5 cut(s) 88, 151, 204, 358, 464
BslFI GGGAC 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 3 cut(s) 91, 473, 544
BsoBI CYCGRG 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 599
Bsp143I GATC 5 cut(s) 36, 120, 293, 379, 432
BspACI CCGC 3 cut(s) 207, 313, 545
BspANI GGCC 3 cut(s) 91, 473, 544
BspCNI CTCAG 2 cut(s) 106, 375
BspDI ATCGAT 1 cut(s) 273
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 389
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 3 cut(s) 44, 301, 427
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 2 cut(s) 87, 357
BsrGI TGTACA 1 cut(s) 599
BssAI RCCGGY 2 cut(s) 87, 357
BssMI GATC 5 cut(s) 36, 120, 293, 379, 432
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 373
BstAUI TGTACA 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 17, 93, 383, 505
BstF5I GGATG 4 cut(s) 222, 238, 344, 463
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 172
BstKTI GATC 5 cut(s) 39, 123, 296, 382, 435
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 5 cut(s) 36, 120, 293, 379, 432
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 2 cut(s) 27, 373
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 3 cut(s) 36, 293, 432
BstYI RGATCY 3 cut(s) 36, 293, 432
Bsu15I ATCGAT 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 505
BsuRI GGCC 3 cut(s) 91, 473, 544
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 4 cut(s) 222, 238, 344, 463
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 209
CciI TCATGA 1 cut(s) 279
CfoI GCGC 2 cut(s) 160, 172
Cfr10I RCCGGY 2 cut(s) 87, 357
Cfr13I GGNCC 6 cut(s) 241, 355, 388, 461, 471, 542
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 252, 600
CspAI ACCGGT 1 cut(s) 357
CviAII CATG 3 cut(s) 280, 363, 555
CviQI GTAC 2 cut(s) 252, 600
DdeI CTNAG 4 cut(s) 17, 93, 383, 505
DpnI GATC 5 cut(s) 38, 122, 295, 381, 434
DpnII GATC 5 cut(s) 36, 120, 293, 379, 432
DriI GACNNNNNGTC 1 cut(s) 400
Eam1105I GACNNNNNGTC 1 cut(s) 400
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 4 cut(s) 241, 355, 388, 461
Eco81I CCTNAGG 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 277
FaeI CATG 3 cut(s) 283, 366, 558
FaiI YATR 6 cut(s) 8, 109, 281, 364, 416, 556
FaqI GGGAC 1 cut(s) 401
FatI CATG 3 cut(s) 279, 362, 554
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 3 cut(s) 314, 368, 545
FokI GGATG 4 cut(s) 229, 245, 331, 470
Fsp4HI GCNGC 3 cut(s) 314, 368, 545
FspBI CTAG 4 cut(s) 161, 306, 468, 610
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 2 cut(s) 159, 171
GluI GCNGC 3 cut(s) 314, 368, 545
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 91, 473, 544
HapII CCGG 5 cut(s) 88, 151, 204, 358, 464
HhaI GCGC 2 cut(s) 160, 172
Hin1II CATG 3 cut(s) 283, 366, 558
Hin6I GCGC 2 cut(s) 158, 170
HinP1I GCGC 2 cut(s) 158, 170
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 3 cut(s) 301, 395, 605
HpaII CCGG 5 cut(s) 88, 151, 204, 358, 464
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 518, 552, 600
Hpy188I TCNGA 5 cut(s) 96, 125, 349, 384, 568
Hpy188III TCNNGA 5 cut(s) 223, 280, 339, 497, 584
Hpy8I GTNNAC 3 cut(s) 518, 552, 600
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 2 cut(s) 127, 580
HpyCH4V TGCA 4 cut(s) 30, 42, 146, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 373
HpyF3I CTNAG 4 cut(s) 17, 93, 383, 505
HpySE526I ACGT 2 cut(s) 127, 580
Hsp92II CATG 3 cut(s) 283, 366, 558
HspAI GCGC 2 cut(s) 158, 170
Kzo9I GATC 5 cut(s) 36, 120, 293, 379, 432
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 4 cut(s) 161, 306, 468, 610
MaeII ACGT 2 cut(s) 127, 580
MalI GATC 5 cut(s) 38, 122, 295, 381, 434
MboI GATC 5 cut(s) 36, 120, 293, 379, 432
MboII GAAGA 1 cut(s) 463
MflI RGATCY 3 cut(s) 36, 293, 432
MluCI AATT 2 cut(s) 25, 575
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 7 cut(s) 26, 102, 175, 223, 273, 284, 378
MseI TTAA 1 cut(s) 438
MspI CCGG 5 cut(s) 88, 151, 204, 358, 464
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 27, 373
NdeII GATC 5 cut(s) 36, 120, 293, 379, 432
NlaIII CATG 3 cut(s) 283, 366, 558
NlaIV GGNNCC 1 cut(s) 389
NmeAIII GCCGAG 1 cut(s) 499
NsbI TGCGCA 1 cut(s) 171
PagI TCATGA 1 cut(s) 279
PfeI GAWTC 2 cut(s) 301, 605
PinAI ACCGGT 1 cut(s) 357
PkrI GCNGC 3 cut(s) 315, 369, 546
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 6 cut(s) 241, 355, 388, 461, 471, 542
PspPPI RGGWCCY 1 cut(s) 388
PsuI RGATCY 3 cut(s) 36, 293, 432
RsaI GTAC 2 cut(s) 253, 601
RsaNI GTAC 2 cut(s) 252, 600
SalI GTCGAC 1 cut(s) 550
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 3 cut(s) 314, 368, 545
Sau3AI GATC 5 cut(s) 36, 120, 293, 379, 432
Sau96I GGNCC 6 cut(s) 241, 355, 388, 461, 471, 542
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 245
SinI GGWCC 4 cut(s) 241, 355, 388, 461
Sse9I AATT 2 cut(s) 25, 575
SsiI CCGC 3 cut(s) 207, 313, 545
SspMI CTAG 4 cut(s) 161, 306, 468, 610
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 2 cut(s) 130, 583
TaqI TCGA 2 cut(s) 273, 551
TasI AATT 2 cut(s) 25, 575
TatI WGTACW 1 cut(s) 599
TauI GCSGC 2 cut(s) 316, 547
TfiI GAWTC 2 cut(s) 301, 605
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 600
TseI GCWGC 1 cut(s) 367
TspGWI ACGGA 2 cut(s) 242, 303
TspRI CASTG 1 cut(s) 600
VpaK11BI GGWCC 4 cut(s) 241, 355, 388, 461
XmiI GTMKAC 1 cut(s) 551
XspI CTAG 4 cut(s) 161, 306, 468, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.