Rorug03G0032800

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007386
Physical Location & Seq
Forward (+)
2612287 .. 2642105
29819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0032800.1

Sequence Viewer

Length: 3954 bp
ATGGCTTCCTCTTCTGTTTCTTCTTCTGTCATCCCCCCAAAAGAAAAGTATGATGTCTTTCTCAGTTTCAGAGGCCAGGATACTCGCAAGACTTTTACCAGCCATCTTCATGCTGCTCTGATAAAGAGGAAAGTGGAAACCTACATTGATTACAGACTTGAGAGAGGAGATGAAGTTGGACCCGCCCTATTAAAAGCAATCAAGGAATCAAAGATTTCCGTGATCATTTTCTCAAAAGACTATGCTTCTTCCGCATGGTGCTTGGATGAACTTGCTTATATACTGGAATGCAAGGAAACACATGGACAACATGTTATACCTATTTTTTATGAAATAGAACCATCACAAGTGCGCTACCAGACCGGAAGTTATGAGACTGCATTTGCTCAACATGAACAATGGTTGAAGGACAAGACGGACAAGGTGGCCAAGTGGAAGGAAGCTTTAGTAAAAGCAGCTAACCTATCTGGGTGTGATTCAACTTCAAAAAAATTTCGGCATGATTCCGATTTAGTTGAGCAAGTCGTCAGAGATGTGTCAGCTAAATTGAATCGTGAATCATCAAGTGATTTAACTGGTTTGATTGGAGTTGAAGGCCGCATTGATAAAATTTTATTGGAATTAGACATTATCCCAGAAGATGTTCGTGTTCGCTCTTTAGTTATCTGGGGTATGGGTGGTATTGGCAAGACCACGCTTGCTGGTGCTGTATTTCACCGACTCTCTTCTCAATTCGAAGCTCACTGTTTTCTTGAAAATGTTAGGGAACGATCAGGTGCCAAAGGAGCTTCCTCTCCTGAACTGTATCTTTTGCGAAATGAACTTCTTGGAGAATTACTAGGGGACAGGAATTTAGCTATCCATACTCCAACTATAGGTGCTTTTTACAAAGAGAGGCTCCGCAATACAAAAGTCCTTGTTGTTCTTGACGACCTGAACCATTCAAGCCAATTAACATTTTTACTTGGAGAAGTTCCATTTGGCCCAGGAAGTAGAATAATTATAACAACTCGAGATATGCAACCAGTTAGGAAGACTCTACTAGTGAAGGAAGTAGCTGGCCATGATGTTAAGATATACGAGGCGGAGGAATTAAATGGTGTTGAGTCTCTTCAGCTCTTCCATTCAAATGCTCGCACACATTGTACAGAAAATCCAGAACTTTTAGAGCAGGTGGCAGATCATGCTGCAGGAGTTCCATTAGCCCTTAAAATTTTGAGTTCATTATTCCTTCAATGCGAGAGCAAAGAAGAGCAGGAACTGTTGTGGGAGAAATTGAAAAAGTTTCCTGATGATGACCTTCAAAATGTGTACAGAGCAAGTTTTGATGGATTAAAAGGAAATGAGAGGGAGATATTCCTTGATATAGCATGTTTTCACAAAAAGGAGAAACTCTGTGATGCAAAAAGAATGCTAGCTGCCTGTGGTTTATTTCCGGATAATGGAATTAAAATTCTCACTGATATGTCTCTCATATCAATTAAAGACAACTGCATATGGATGCACGATGTGATCCAAGAAATGGGTTGGAAGATAGTCCGGGAAGAATGTACTGAAGAGCCAGGAAAACGCAGTAGGTTGCACAATGGTGAGGACGTCTGTCATGTATTGAAAAGGAATATGGGAACTGCCAAAGTACAAAGCATTTCCAGCAGGAATTGTGTCAACACACTAATGTTGGATCCTCAAGCTTTCACCGGGATGCATAACTTAAGATTCCTTATGCTAAGATTTATACATCTTGATGACGAGGCAAATCTAGAGTATCTGCCTGATGCCCTTCAATATCTCTTTTGGCATTGTTACCCTTTGAAATCTTTTCCATCAAAGTATTCTCCAAACAATCTTGTTGAGCTTCATATGCCCTGGAGCAAACTCAAGAGACTTTGGAATAAAGGCCAGAATCCTAAGAACTTGAAAAGGATCGATCTTAGTCACTCCATGGACCTGGCCGATGTTGGAGAGCTGTCAAATAGTGTAAACATTGAGAGTATAAATCTTCAAGGCTGTAGTAGTTTGGTTCAAGTTCCGGATTTGTCAAAGTGTGTATACATTAGGAGTATAAATCTCCTAGGCTGCGCAAGTTTGGTTCGAGTTCCAGACCTGTCAAAGAGTGTAAACATTGAGAGTATAAATCTTCAATACTGTGATGGTTTGGTTCAAGTTCCTTCATACTTTCAAAACTTCACAAGGCTTACTCATTTGAATTTGGGACATTGTCGGAAGATTAGAGTTCTACCGAAGATACCAAGCAATATGGAATTCTTATATTTGGATCATACTTCTATAGAAGAATTGCCTTCATCAATTTGGTCTCTTGAAAAACTTCTTACATTGAATCTTCGCAACTGTTGGCACATTGAGAAGTTTCCGAGCAGTCCATGGAAGATGAAATCCCTCACTCATCTTTTGTTGAGCGGGACAAACATAGAAACAGTGCCCTCATCGTTATTCATGTGTATGACTGGGATCATTTCACTTGAGCTGAGAGATTGTCGTCGCCTTGTCAGTCTCCCAACCGACATTTGTAAGTTGAAATCTCTTGAGAAACTTGATCTCTTTGGTTGCTCTAGTTTCACAAACTTTCCGGAAATTGCGGAGCCTGTGGAACATCTGGAGTATCTTAATTTAAGTGGGACGAAAATTGAAGAGCTGCCGTCATCGGTTGGGAATCTTGTTGGGCTCAAGACATTAGATTTAAGTGGCTGCACAAGCCTTGAATTACTCCCAAACAGCTTCGGCAATTTAAACATTCTTGAGTGGTTCTCATTTCGTGGCTGTAAGAAGTTAGAAGAAATTCCCGATTGCTTTACAAGCTTTCCTGCATTGCAAGTGTTAGATTTAAGTGAAACCATGATTGAGACCATACCTCCCAGCATCCAAGAAGTTTCTGGGCTCAAGTCTCTGATACTTACTATGTGCGAGCGGCTTCAATCTTTGCCAGTGCTCCCATGTCTTCTAGAAGAATTGAGTGCATGGGGGTGCATTAAACTCGAGACTGTGTCAGTTTCAGTGACTGCAGAGACACAAGGTTTGGATCAAATACTTTTTGGGAAGAGGACCGAGGTGCATTATTTTGGTGGTTGCGTTAATTTGGATAACAATTCAAGGAGTAACATAATGGATGATGCACGCCTCAGAATATTGCGAATGGCAACTGCTTATGATCGTAAACGTTTATCATCTGGTAAAGTAGAGGTAATGTGTCCGGGAAATGAAATTCCAAAATGGTTTAGCTGTCAAACGGAGGGATCTTCAATGAATATTAAGCTTCCTCTGCATTGGTCTGATGATTCGAAGTTCTTGGGTATTGCTCTCTGCGTTGTTTCTGGAACCTACCTTGAGTGTCAATGTGAGATGATTCTCAAAACCAACGACGGTGAAACCCATGGTGTCAATTTGGGAAATCCAGTGGGCCACCGGAGGGATGACACAGCAGATGAAACAGTGGGCCACCCGAGGGATGACACAGCAGATGAAACAGTGGGCCACCCGAGGGATGACACAGCAGATGAAACAGATAAAGTGTGGGTGTGGTATAATACAGTCCATGTAATTTCAGATGAAGCAAAATGCTCTACGGAAGCCTCTTTTTACTTTTGGTCTACGGACTCCGAACGTGAACGGTTAAATAAAGTGAAAAGGTGTGGGGTCTGCTTTCTGTATGCCCAAGGCCAAGATGATGACGCTCTGAAATTTGAAGTCATACGTCCACAACAAGTTACTACAATGTCTGGTCACTTTGGTGGAAGCGAAGCCCAAGTTACTACAATGTCTGGTCACTTTGGTGGAAGCGGAGCCAAAGTTACTACAATGTCTGGTCACTTTGCTGGAAGCGAAACCAAAAAAAGAGTCTGGTCACTTTGGTGGAAGCGAAACCAAAAAAAGAAAAAAAGAGTCTGGTCACTTTGCTGGAAGCGAAACCAAAAAAAGAGTCTGGTTGTTGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1317

Amino Acids

148.71

Weight (kDa)

6.26

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 194 4.5e-54 TIR domain
TIR_2 PF13676 19 - 114 7.9e-14 TIR domain
NB-ARC PF00931 215 - 363 7e-09 NB-ARC domain
WHD_ROQ1 PF23282 448 - 516 1.1e-20 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 686 - 803 5.5e-06 Leucine-rich repeat region
LRR_13 PF23286 845 - 932 2.9e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 871 - 930 3.8e-10 Leucine-rich repeat region
C-JID PF20160 1069 - 1224 4e-15 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
AarI CACCTGC 1 cut(s) 1162
AatII GACGTC 1 cut(s) 1599
Acc16I TGCGCA 1 cut(s) 2080
Acc36I ACCTGC 1 cut(s) 1162
AccB1I GGYRCC 1 cut(s) 776
AccB7I CCANNNNNTGG 1 cut(s) 1522
AccBSI CCGCTC 2 cut(s) 2418, 2926
AccI GTMKAC 2 cut(s) 2049, 3605
AccIII TCCGGA 3 cut(s) 1435, 2029, 2587
AciI CCGC 9 cut(s) 183, 252, 598, 901, 1085, 2418, 2597, 2926, 3795
AclI AACGTT 1 cut(s) 3175
AclWI GGATC 8 cut(s) 1507, 1676, 1689, 1931, 2283, 2477, 3045, 3259
AcoI YGGCCR 3 cut(s) 426, 1060, 1950
AcuI CTGAAG 2 cut(s) 1097, 1575
AcyI GRCGYC 1 cut(s) 1596
AdeI CACNNNGTG 1 cut(s) 1510
AfaI GTAC 4 cut(s) 1147, 1313, 1552, 1638
AfiI CCNNNNNNNGG 6 cut(s) 875, 1442, 1522, 3424, 3460, 3496
AflII CTTAAG 1 cut(s) 1711
AflIII ACRYGT 1 cut(s) 310
AhlI ACTAGT 1 cut(s) 1042
AjnI CCWGG 5 cut(s) 75, 985, 1561, 1865, 1947
AjuI GAANNNNNNNTTGG 2 cut(s) 963, 995
AleI CACNNNNGTG 4 cut(s) 1587, 3744, 3786, 3865
Alw21I GWGCWC 1 cut(s) 2949
AlwI GGATC 8 cut(s) 1507, 1676, 1689, 1931, 2283, 2477, 3045, 3259
AlwNI CAGNNNCTG 2 cut(s) 1261, 3017
Ama87I CYCGRG 4 cut(s) 1011, 2993, 3457, 3493
Aor13HI TCCGGA 3 cut(s) 1435, 2029, 2587
ApeKI GCWGC 7 cut(s) 113, 455, 1187, 1418, 2076, 2653, 2706
ArsI GACNNNNNNTTYG 6 cut(s) 3016, 3048, 3837, 3869, 3919, 3951
Asp700I GAANNNNTTC 3 cut(s) 642, 2325, 2796
AspA2I CCTAGG 1 cut(s) 2071
AspLEI GCGC 2 cut(s) 354, 2081
AspS9I GGNCC 7 cut(s) 179, 983, 1945, 3060, 3415, 3451, 3487
AsuC2I CCSGG 3 cut(s) 1541, 1699, 3210
AsuHPI GGTGA 4 cut(s) 707, 1601, 1687, 3392
AsuII TTCGAA 2 cut(s) 735, 3296
AsuNHI GCTAGC 1 cut(s) 1414
AvaI CYCGRG 4 cut(s) 1011, 2993, 3457, 3493
AvaII GGWCC 3 cut(s) 179, 1945, 3060
AvrII CCTAGG 1 cut(s) 2071
BaeGI GKGCMC 1 cut(s) 2442
BalI TGGCCA 2 cut(s) 428, 1062
BamHI GGATCC 1 cut(s) 1681
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 2 cut(s) 2685, 2898
BbsI GAAGAC 2 cut(s) 1040, 2948
Bbv12I GWGCWC 1 cut(s) 2949
BbvI GCAGC 7 cut(s) 100, 467, 1174, 1405, 2063, 2640, 2693
BccI CCATC 5 cut(s) 111, 349, 1322, 1831, 2144
BceAI ACGGC 1 cut(s) 2641
BcgI CGANNNNNNTGC 2 cut(s) 2974, 3008
BciT130I CCWGG 5 cut(s) 77, 987, 1563, 1867, 1949
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 3 cut(s) 1541, 1699, 3210
BcuI ACTAGT 1 cut(s) 1042
BfaI CTAG 7 cut(s) 839, 1043, 1415, 1760, 2072, 2571, 2960
BfmI CTRYAG 5 cut(s) 873, 1188, 2008, 2286, 3018
BfrI CTTAAG 1 cut(s) 1711
BfuAI ACCTGC 1 cut(s) 1162
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 9 cut(s) 114, 456, 598, 1188, 1419, 2077, 2654, 2707, 2927
BlnI CCTAGG 1 cut(s) 2071
BlsI GCNGC 9 cut(s) 115, 457, 599, 1189, 1420, 2078, 2655, 2708, 2928
Bme1390I CCNGG 8 cut(s) 77, 987, 1541, 1563, 1699, 1867, 1949, 3210
Bme18I GGWCC 3 cut(s) 179, 1945, 3060
BmeT110I CYCGRG 4 cut(s) 1011, 2993, 3457, 3493
BmgT120I GGNCC 7 cut(s) 179, 983, 1945, 3060, 3415, 3451, 3487
BmiI GGNNCC 7 cut(s) 181, 778, 899, 1683, 2601, 3334, 3799
BmrFI CCNGG 8 cut(s) 77, 987, 1541, 1563, 1699, 1867, 1949, 3210
BmrI ACTGGG 1 cut(s) 2475
BmsI GCATC 6 cut(s) 1390, 1491, 1692, 1765, 2886, 3118
BmtI GCTAGC 1 cut(s) 1418
BmuI ACTGGG 1 cut(s) 2475
BoxI GACNNNNGTC 1 cut(s) 1599
BpiI GAAGAC 2 cut(s) 1040, 2948
BplI GAGNNNNNCTC 2 cut(s) 2750, 2782
BpmI CTGGAG 2 cut(s) 1888, 2636
Bpu14I TTCGAA 2 cut(s) 735, 3296
BpuEI CTTGAG 9 cut(s) 179, 1671, 1862, 2501, 2564, 2669, 2777, 2882, 3362
BpuMI CCSGG 3 cut(s) 1541, 1699, 3210
Bsa29I ATCGAT 1 cut(s) 1926
BsaHI GRCGYC 1 cut(s) 1596
BsaI GGTCTC 2 cut(s) 2319, 2855
BsaWI WCCGGW 5 cut(s) 362, 1435, 2029, 2587, 3420
BsaXI ACNNNNNCTCC 6 cut(s) 159, 189, 2854, 2884, 3789, 3819
Bsc4I CCNNNNNNNGG 6 cut(s) 875, 1442, 1522, 3424, 3460, 3496
Bse1I ACTGG 6 cut(s) 288, 580, 1025, 2470, 2942, 3410
Bse3DI GCAATG 1 cut(s) 2825
BseAI TCCGGA 3 cut(s) 1435, 2029, 2587
BseBI CCWGG 5 cut(s) 77, 987, 1563, 1867, 1949
BseCI ATCGAT 1 cut(s) 1926
BseGI GGATG 9 cut(s) 30, 271, 1506, 1707, 2877, 3130, 3433, 3469, 3505
BseLI CCNNNNNNNGG 6 cut(s) 875, 1442, 1522, 3424, 3460, 3496
BseMI GCAATG 1 cut(s) 2825
BseMII CTCAG 3 cut(s) 76, 2477, 3151
BseNI ACTGG 6 cut(s) 288, 580, 1025, 2470, 2942, 3410
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 2442
BseXI GCAGC 7 cut(s) 100, 467, 1174, 1405, 2063, 2640, 2693
BseYI CCCAGC 1 cut(s) 2873
BsgI GTGCAG 1 cut(s) 2692
BshNI GGYRCC 1 cut(s) 776
BshVI ATCGAT 1 cut(s) 1926
BsiHKAI GWGCWC 1 cut(s) 2949
BsiHKCI CYCGRG 4 cut(s) 1011, 2993, 3457, 3493
BsiSI CCGG 8 cut(s) 363, 1436, 1540, 1698, 2030, 2588, 3209, 3421
BslFI GGGAC 4 cut(s) 857, 2226, 2434, 2650
BslI CCNNNNNNNGG 6 cut(s) 875, 1442, 1522, 3424, 3460, 3496
BsmFI GGGAC 4 cut(s) 857, 2226, 2434, 2650
BsmI GAATGC 2 cut(s) 293, 1416
Bso31I GGTCTC 2 cut(s) 2319, 2855
BsoBI CYCGRG 4 cut(s) 1011, 2993, 3457, 3493
Bsp119I TTCGAA 2 cut(s) 735, 3296
Bsp1286I GDGCHC 4 cut(s) 2442, 2685, 2898, 2949
Bsp13I TCCGGA 3 cut(s) 1435, 2029, 2587
Bsp1407I TGTACA 2 cut(s) 1145, 1311
Bsp19I CCATGG 3 cut(s) 1941, 2381, 3388
BspACI CCGC 9 cut(s) 183, 252, 598, 901, 1085, 2418, 2597, 2926, 3795
BspCNI CTCAG 3 cut(s) 75, 2478, 3150
BspDI ATCGAT 1 cut(s) 1926
BspEI TCCGGA 3 cut(s) 1435, 2029, 2587
BspLI GGNNCC 7 cut(s) 181, 778, 899, 1683, 2601, 3334, 3799
BspMAI CTGCAG 2 cut(s) 1192, 3022
BspMI ACCTGC 1 cut(s) 1162
BspOI GCTAGC 1 cut(s) 1418
BspPI GGATC 8 cut(s) 1507, 1676, 1689, 1931, 2283, 2477, 3045, 3259
BspQI GCTCTTC 4 cut(s) 1124, 1245, 1551, 2643
BspT104I TTCGAA 2 cut(s) 735, 3296
BspT107I GGYRCC 1 cut(s) 776
BspTI CTTAAG 1 cut(s) 1711
BspTNI GGTCTC 2 cut(s) 2319, 2855
BsrBI CCGCTC 2 cut(s) 2418, 2926
BsrDI GCAATG 1 cut(s) 2825
BsrGI TGTACA 2 cut(s) 1145, 1311
BsrI ACTGG 6 cut(s) 288, 580, 1025, 2470, 2942, 3410
BssNAI GTATAC 1 cut(s) 2050
BssNI GRCGYC 1 cut(s) 1596
BssT1I CCWWGG 5 cut(s) 1941, 2071, 2381, 3388, 3670
Bst1107I GTATAC 1 cut(s) 2050
Bst2UI CCWGG 5 cut(s) 77, 987, 1563, 1867, 1949
Bst6I CTCTTC 8 cut(s) 16, 730, 1116, 1124, 1245, 1551, 2643, 3050
BstACI GRCGYC 1 cut(s) 1596
BstAFI CTTAAG 1 cut(s) 1711
BstAPI GCANNNNNTGC 1 cut(s) 1184
BstAUI TGTACA 2 cut(s) 1145, 1311
BstBI TTCGAA 2 cut(s) 735, 3296
BstC8I GCNNGC 6 cut(s) 699, 1060, 1135, 1416, 2924, 3133
BstDEI CTNAG 6 cut(s) 62, 1727, 1908, 1931, 2486, 3137
BstDSI CCRYGG 3 cut(s) 1941, 2381, 3388
BstF5I GGATG 9 cut(s) 30, 271, 1506, 1707, 2877, 3130, 3433, 3469, 3505
BstHHI GCGC 2 cut(s) 354, 2081
BstMWI GCNNNNNNNGC 8 cut(s) 251, 785, 1184, 1650, 1861, 2712, 2814, 3277
BstNI CCWGG 5 cut(s) 77, 987, 1563, 1867, 1949
BstNSI RCATGY 2 cut(s) 314, 1374
BstPAI GACNNNNGTC 1 cut(s) 1599
BstSCI CCNGG 8 cut(s) 75, 985, 1539, 1561, 1697, 1865, 1947, 3208
BstSFI CTRYAG 5 cut(s) 873, 1188, 2008, 2286, 3018
BstSLI GKGCMC 1 cut(s) 2442
BstV1I GCAGC 7 cut(s) 100, 467, 1174, 1405, 2063, 2640, 2693
BstV2I GAAGAC 2 cut(s) 1040, 2948
BstX2I RGATCY 2 cut(s) 1681, 3251
BstXI CCANNNNNNTGG 1 cut(s) 1948
BstYI RGATCY 2 cut(s) 1681, 3251
BstZ17I GTATAC 1 cut(s) 2050
Bsu15I ATCGAT 1 cut(s) 1926
BsuI GTATCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 1926
BtgI CCRYGG 3 cut(s) 1941, 2381, 3388
BtsCI GGATG 9 cut(s) 30, 271, 1506, 1707, 2877, 3130, 3433, 3469, 3505
BtsIMutI CAGTG 8 cut(s) 742, 1458, 2442, 2949, 3018, 3417, 3453, 3489
BveI ACCTGC 1 cut(s) 1162
Cac8I GCNNGC 6 cut(s) 699, 1060, 1135, 1416, 2924, 3133
CaiI CAGNNNCTG 2 cut(s) 1261, 3017
CfoI GCGC 2 cut(s) 354, 2081
Cfr13I GGNCC 7 cut(s) 179, 983, 1945, 3060, 3415, 3451, 3487
ClaI ATCGAT 1 cut(s) 1926
CseI GACGC 1 cut(s) 3695
Csp6I GTAC 4 cut(s) 1146, 1312, 1551, 1637
CviQI GTAC 4 cut(s) 1146, 1312, 1551, 1637
DdeI CTNAG 6 cut(s) 62, 1727, 1908, 1931, 2486, 3137
DraI TTTAAA 1 cut(s) 2748
DraIII CACNNNGTG 1 cut(s) 1510
EaeI YGGCCR 3 cut(s) 426, 1060, 1950
Eam1104I CTCTTC 8 cut(s) 16, 730, 1116, 1124, 1245, 1551, 2643, 3050
EarI CTCTTC 8 cut(s) 16, 730, 1116, 1124, 1245, 1551, 2643, 3050
EciI GGCGGA 1 cut(s) 1100
Eco130I CCWWGG 5 cut(s) 1941, 2071, 2381, 3388, 3670
Eco24I GRGCYC 2 cut(s) 2685, 2898
Eco31I GGTCTC 2 cut(s) 2319, 2855
Eco47I GGWCC 3 cut(s) 179, 1945, 3060
Eco57I CTGAAG 2 cut(s) 1097, 1575
Eco88I CYCGRG 4 cut(s) 1011, 2993, 3457, 3493
EcoRI GAATTC 1 cut(s) 2261
EcoRII CCWGG 5 cut(s) 75, 985, 1561, 1865, 1947
EcoT14I CCWWGG 5 cut(s) 1941, 2071, 2381, 3388, 3670
EcoT22I ATGCAT 1 cut(s) 1707
EcoT38I GRGCYC 2 cut(s) 2685, 2898
ErhI CCWWGG 5 cut(s) 1941, 2071, 2381, 3388, 3670
FaqI GGGAC 4 cut(s) 857, 2226, 2434, 2650
FauI CCCGC 2 cut(s) 190, 2411
FauNDI CATATG 2 cut(s) 1496, 1860
FbaI TGATCA 1 cut(s) 222
FblI GTMKAC 2 cut(s) 2049, 3605
Fnu4HI GCNGC 9 cut(s) 114, 456, 598, 1188, 1419, 2077, 2654, 2707, 2927
FokI GGATG 9 cut(s) 17, 278, 1513, 1714, 2864, 3137, 3440, 3476, 3512
FriOI GRGCYC 2 cut(s) 2685, 2898
Fsp4HI GCNGC 9 cut(s) 114, 456, 598, 1188, 1419, 2077, 2654, 2707, 2927
FspBI CTAG 7 cut(s) 839, 1043, 1415, 1760, 2072, 2571, 2960
FspI TGCGCA 1 cut(s) 2080
GlaI GCGC 2 cut(s) 353, 2080
GluI GCNGC 9 cut(s) 114, 456, 598, 1188, 1419, 2077, 2654, 2707, 2927
GsaI CCCAGC 1 cut(s) 2877
GsuI CTGGAG 2 cut(s) 1888, 2636
HapII CCGG 8 cut(s) 363, 1436, 1540, 1698, 2030, 2588, 3209, 3421
HgaI GACGC 1 cut(s) 3695
HhaI GCGC 2 cut(s) 354, 2081
Hin1I GRCGYC 1 cut(s) 1596
Hin6I GCGC 2 cut(s) 352, 2079
HinP1I GCGC 2 cut(s) 352, 2079
HincII GTYRAC 1 cut(s) 1666
HindII GTYRAC 1 cut(s) 1666
HindIII AAGCTT 4 cut(s) 441, 1689, 2815, 3269
HpaII CCGG 8 cut(s) 363, 1436, 1540, 1698, 2030, 2588, 3209, 3421
HphI GGTGA 4 cut(s) 707, 1601, 1687, 3392
Hpy166II GTNNAC 9 cut(s) 1312, 1666, 1981, 2050, 2119, 3173, 3606, 3623, 3713
Hpy8I GTNNAC 9 cut(s) 1312, 1666, 1981, 2050, 2119, 3173, 3606, 3623, 3713
Hpy99I CGWCG 2 cut(s) 2502, 3380
HpyAV CCTTC 9 cut(s) 400, 430, 587, 1042, 1241, 1310, 1790, 2178, 2310
HpyCH4IV ACGT 4 cut(s) 1596, 3175, 3619, 3709
HpyF10VI GCNNNNNNNGC 8 cut(s) 251, 785, 1184, 1650, 1861, 2712, 2814, 3277
HpyF3I CTNAG 6 cut(s) 62, 1727, 1908, 1931, 2486, 3137
HpySE526I ACGT 4 cut(s) 1596, 3175, 3619, 3709
Hsp92I GRCGYC 1 cut(s) 1596
HspAI GCGC 2 cut(s) 352, 2079
Kpn2I TCCGGA 3 cut(s) 1435, 2029, 2587
Ksp22I TGATCA 1 cut(s) 222
LguI GCTCTTC 4 cut(s) 1124, 1245, 1551, 2643
LmnI GCTCC 6 cut(s) 785, 903, 1869, 2599, 2952, 3797
Lsp1109I GCAGC 7 cut(s) 100, 467, 1174, 1405, 2063, 2640, 2693
LweI GCATC 6 cut(s) 1390, 1491, 1692, 1765, 2886, 3118
MaeI CTAG 7 cut(s) 839, 1043, 1415, 1760, 2072, 2571, 2960
MaeII ACGT 4 cut(s) 1596, 3175, 3619, 3709
MbiI CCGCTC 2 cut(s) 2418, 2926
MflI RGATCY 2 cut(s) 1681, 3251
MhlI GDGCHC 4 cut(s) 2442, 2685, 2898, 2949
MlsI TGGCCA 2 cut(s) 428, 1062
MluNI TGGCCA 2 cut(s) 428, 1062
MlyI GAGTC 7 cut(s) 714, 1030, 1115, 3605, 3861, 3906, 3943
MmeI TCCRAC 6 cut(s) 157, 893, 1508, 1659, 1939, 2201
Mox20I TGGCCA 2 cut(s) 428, 1062
Mph1103I ATGCAT 1 cut(s) 1707
MroI TCCGGA 3 cut(s) 1435, 2029, 2587
MroXI GAANNNNTTC 3 cut(s) 642, 2325, 2796
MscI TGGCCA 2 cut(s) 428, 1062
Msp20I TGGCCA 2 cut(s) 428, 1062
MspCI CTTAAG 1 cut(s) 1711
MspI CCGG 8 cut(s) 363, 1436, 1540, 1698, 2030, 2588, 3209, 3421
MspR9I CCNGG 8 cut(s) 77, 987, 1541, 1563, 1699, 1867, 1949, 3210
Mva1269I GAATGC 2 cut(s) 293, 1416
MvaI CCWGG 5 cut(s) 77, 987, 1563, 1867, 1949
MwoI GCNNNNNNNGC 8 cut(s) 251, 785, 1184, 1650, 1861, 2712, 2814, 3277
NciI CCSGG 3 cut(s) 1541, 1699, 3210
NcoI CCATGG 3 cut(s) 1941, 2381, 3388
NdeI CATATG 2 cut(s) 1496, 1860
NheI GCTAGC 1 cut(s) 1414
NlaIV GGNNCC 7 cut(s) 181, 778, 899, 1683, 2601, 3334, 3799
NmuCI GTSAC 7 cut(s) 1934, 3013, 3737, 3779, 3821, 3858, 3903
NsbI TGCGCA 1 cut(s) 2080
NsiI ATGCAT 1 cut(s) 1707
NspI RCATGY 2 cut(s) 314, 1374
NspV TTCGAA 2 cut(s) 735, 3296
OliI CACNNNNGTG 4 cut(s) 1587, 3744, 3786, 3865
PaeR7I CTCGAG 2 cut(s) 1011, 2993
PaqCI CACCTGC 1 cut(s) 1162
PciI ACATGT 1 cut(s) 310
PciSI GCTCTTC 4 cut(s) 1124, 1245, 1551, 2643
PctI GAATGC 2 cut(s) 293, 1416
PdmI GAANNNNTTC 3 cut(s) 642, 2325, 2796
PflFI GACNNNGTC 2 cut(s) 2217, 3001
PflMI CCANNNNNTGG 1 cut(s) 1522
PfoI TCCNGGA 2 cut(s) 1539, 3208
PkrI GCNGC 9 cut(s) 115, 457, 599, 1189, 1420, 2078, 2655, 2708, 2928
PleI GAGTC 7 cut(s) 714, 1030, 1114, 3605, 3860, 3905, 3942
PpsI GAGTC 7 cut(s) 714, 1030, 1114, 3605, 3860, 3905, 3942
PscI ACATGT 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 1599
PsiI TTATAA 1 cut(s) 1004
Psp1406I AACGTT 1 cut(s) 3175
Psp6I CCWGG 5 cut(s) 75, 985, 1561, 1865, 1947
PspFI CCCAGC 1 cut(s) 2873
PspGI CCWGG 5 cut(s) 75, 985, 1561, 1865, 1947
PspN4I GGNNCC 7 cut(s) 181, 778, 899, 1683, 2601, 3334, 3799
PspPI GGNCC 7 cut(s) 179, 983, 1945, 3060, 3415, 3451, 3487
PstI CTGCAG 2 cut(s) 1192, 3022
PstNI CAGNNNCTG 2 cut(s) 1261, 3017
PsuI RGATCY 2 cut(s) 1681, 3251
PsyI GACNNNGTC 2 cut(s) 2217, 3001
RsaI GTAC 4 cut(s) 1147, 1313, 1552, 1638
RsaNI GTAC 4 cut(s) 1146, 1312, 1551, 1637
SapI GCTCTTC 4 cut(s) 1124, 1245, 1551, 2643
SatI GCNGC 9 cut(s) 114, 456, 598, 1188, 1419, 2077, 2654, 2707, 2927
Sau96I GGNCC 7 cut(s) 179, 983, 1945, 3060, 3415, 3451, 3487
SchI GAGTC 7 cut(s) 714, 1030, 1115, 3605, 3861, 3906, 3943
ScrFI CCNGG 8 cut(s) 77, 987, 1541, 1563, 1699, 1867, 1949, 3210
SduI GDGCHC 4 cut(s) 2442, 2685, 2898, 2949
SfaNI GCATC 6 cut(s) 1390, 1491, 1692, 1765, 2886, 3118
SfcI CTRYAG 5 cut(s) 873, 1188, 2008, 2286, 3018
Sfr274I CTCGAG 2 cut(s) 1011, 2993
SfuI TTCGAA 2 cut(s) 735, 3296
SinI GGWCC 3 cut(s) 179, 1945, 3060
SlaI CTCGAG 2 cut(s) 1011, 2993
SpeI ACTAGT 1 cut(s) 1042
SsiI CCGC 9 cut(s) 183, 252, 598, 901, 1085, 2418, 2597, 2926, 3795
SspI AATATT 2 cut(s) 3144, 3265
SspMI CTAG 7 cut(s) 839, 1043, 1415, 1760, 2072, 2571, 2960
StyD4I CCNGG 8 cut(s) 75, 985, 1539, 1561, 1697, 1865, 1947, 3208
StyI CCWWGG 5 cut(s) 1941, 2071, 2381, 3388, 3670
TaiI ACGT 4 cut(s) 1599, 3178, 3622, 3712
TaqI TCGA 6 cut(s) 735, 1012, 1926, 2092, 2994, 3296
TaqII GACCGA 1 cut(s) 3077
TatI WGTACW 4 cut(s) 1145, 1311, 1550, 1636
TauI GCSGC 2 cut(s) 600, 2929
TscAI CASTG 8 cut(s) 749, 1465, 2442, 2949, 3018, 3417, 3453, 3489
TseFI GTSAC 7 cut(s) 1934, 3013, 3737, 3779, 3821, 3858, 3903
TseI GCWGC 7 cut(s) 113, 455, 1187, 1418, 2076, 2653, 2706
Tsp45I GTSAC 7 cut(s) 1934, 3013, 3737, 3779, 3821, 3858, 3903
TspGWI ACGGA 5 cut(s) 208, 431, 3260, 3596, 3623
TspRI CASTG 8 cut(s) 749, 1465, 2442, 2949, 3018, 3417, 3453, 3489
Tth111I GACNNNGTC 2 cut(s) 2217, 3001
Van91I CCANNNNNTGG 1 cut(s) 1522
Vha464I CTTAAG 1 cut(s) 1711
VpaK11BI GGWCC 3 cut(s) 179, 1945, 3060
XbaI TCTAGA 2 cut(s) 1759, 2959
XceI RCATGY 2 cut(s) 314, 1374
XcmI CCANNNNNNNNNTGG 1 cut(s) 2888
XhoI CTCGAG 2 cut(s) 1011, 2993
XmaJI CCTAGG 1 cut(s) 2071
XmiI GTMKAC 2 cut(s) 2049, 3605
XmnI GAANNNNTTC 3 cut(s) 642, 2325, 2796
XspI CTAG 7 cut(s) 839, 1043, 1415, 1760, 2072, 2571, 2960
ZraI GACGTC 1 cut(s) 1597
Zsp2I ATGCAT 1 cut(s) 1707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.