MD04G1183900.v1.1

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0007386
Physical Location & Seq
Forward (+)
27506977 .. 27512690
5714 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1183900.v1.1.491

Sequence Viewer

Length: 3507 bp
ATGGGGATGGGACTAAAAGTTGGAGACTTTAGTGGGCATTTTTTAAATTCAGTAACTTTGGGTTTGCATCTGAGAGACTTAGTTGAGTTCTGCTTGCTTGTACTGCAGCTGAAGAAAGTTTGTGTGAGAATGTCTTCTTCAAGGCCTAGCAACTCGTCCAGCAATTCAGGGCGGTCTAGACACAGTGCTAGAATTATTGCTCAGACAACTGTTGATGCAAAGCTGCATGCGGATTTTGAGGAGTCGGGTAGTTCCTTTGACTACTCGAGCTCAGTGCGTGTTGGCAGTTCAGTTGGCGGGGATCAACAGCCTAGGTCCGAAAAAGTGACCACTGCTTATCTCCATCACATACAGAAAGGCAAGACGATCCAACCGTTTGGATGCTTGCTAGCCTTAGATGAGAAGACTTTCAAGGTCATTGCTTACAGTGCGAATGCCCCTGAAATGCTGACTACGGTCAGCCATGCAGTCCCAAGTGTCGGGGACTCCCCTGTTCTTGGCATAGGAACAGATATTAGAACAATTTTCACTGCACCTAGTGCCTCTGCACTGCATAAGGCCCTAGGATTTGGTGAGGTTTCTCTCTTAAATCCCATCTTAGTCCATTGCAAGACCTCTGGCAAGCCTTTCTATGCAATAACCCATCGAGTAACGGGCAGTTTGATCATTGACTTTGAGCCGGTGAAGCCTTACGAAGTCCCTATGACTGCTGCCGGGGCCCTGCAATCGTACAAGCTTGCGGCCAAAGCAATTGCCAGATTGCAGTCTTTGCCTAGTGGGAGCATGGAGAGGCTTTGTGATACAATGGTACAAGAGGTTTTTGAACTCACGGGTTATGACAGGGTGATGGCCTATAAATTTCATGACGATGATCATGGAGAAGTGGTCTCTGAGCTTACGAAGCCTGGCCTGGAGCCATATCTAGGTTTGCATTATCCATCCACTGACATCCCACAGGCTTCACGGTTCCTATTTATGAAGAATAAGGTCCGCATGATTGTCGATTGTTGTGCGAAACATGTGAAGGTTTTTCAAGATGAGAAGCTTCCGCTGGATCTCACATTGTGCGGTTCAACCCTGAGAGCCCCACACAGTTGCCATTTAGAATACATGAAGAATATGAATTCCATTGCATCTCTTGTTATGGCAGTAGTTGTTAATGAGGGGGATGACGAGGTTACCGATCCTGATTCTGTTCCACCTCAAAAAAAAAAGAGACTTTGGGGTTTGGTAGTATGCCATAATACAAGTCCAAGATTTGTTCCTTTCCCTCTCAGGTATGCCTGTGAGTTTTTAACTCAAGTGTTTGCCATCCATGTCAATAAGGAAATAGAGTTGGAAGAACAGATGGTTGAGAAGAACATCTTGCGTACTCAAACGCTGTTGTGTGATATGCTGTTACGAGATGCACCCTTGGGTATTATGTCACAGAGCCCTAATATTATGGATCTAGTGAAATGTGATGGAGCTGCCCTATTGTACAAGAACAAGGTATGGAGACTTGGAATGACTCCGAGTGACTTCCAGCTTCATGACATAGCTTCATGGCTCTCCGAGTACCATATGGATTCTACGGGTTTGAGTACAGATAGCTTGTATGATGCAGGATTCCCGGGGGCTCTAGCTCTTGGTGATGTAGTATGTGGAATGGCAGCTGTGTGGTTAACTTCCAAGGACATTCTCTTTTGGTTTCGATCCCACACTGCTGCAGAAATTCGATGGGGTGGTGCAAAACATGAAGTCGGTGAGAAAGATGATGGTTGCAAAATGCACCCTAGATCGTCATTCAAGGCTTTCCTTGAAGTTGTCAAGACGAGGAGCTTGCCTTGGAAGGACTATGAAATGGATGCAATTCATTCTTTGCAGCTTATTCTGAGGAATGCATTCAAAGATGCCGGAACCACCTTGGAAGCAAACACCAAAGCAATCAATGTAAGGCTTAGTGACCTAAAACTTGAAGGGATGCAAGAACTGGAAGCTGTGACGAGTGAGATGGTCCGTTTGATTGAAACAGCGACGGTTCCCATTTTGGCTGTTGATGTTCATGGGCTGGTTAATGGGTGGAATACAAAAATTGGCGAGTTAACTGGTCTTCCTGTTGACAAGGCAATCGGAAAGCATTTGCTCTCACTGGTGGAAGATTCTTCGACTGACACAGTGAAAAAGATGTTGAACTCGGCATTGCATGGCAAAGAGGAACAAAACATCCAATTCGAGATAAAAACACATGGTTCTAGGGCTGACCTTGGTCCCATCAGCTTGGTTGTGAATGCTTGTGCAAGCAGAGACATTCGGGAAAATGTTGTGGGGGTGTGTTTTGTGGCACAAGATATCACTGGTCAGAAGAATGTGATGGACAGATTCACCCGGATTGAAGGTGATTACAAAGCAATTGTACAAAACCCTAACCCCTTGATCCCCCCAATATTTGGTGCAGATGAATTTGGCTGGTGTTCTGAGTGGAATTCAGCAATGACGAAGTTAACAGGATGGAAACGAGAGGAGGTAATGGATAAAATGCTTCTGGGAGAGGTTTTTGGGATCCACATGGCATGTTGTCCTCTCAAAAGCCAGGAATCTTTTGTAAATCTTGGTGTTGTCCTTAACCATGCCATGACAGGTCAGGTGTCCGAAAAGGTTCCCTTTGGTTTCTGTGCTCGCAATGGAAAGTACATAGAATGCCTGCTGTGTGTGAGTAAGAAATTGGACAGCGAAGGCTTGGTCACTGGGGTCTTTTGCTTCTTGCAGCTTGCTAGCCCAGAGCTGCAACAAGCACTTCACATCCAGCGCTTATCAGAACAAACTGCAGTGAAGAGATTGAAAGAATTGTCTTATATTAGAAGGCAGATCCGGAATCCTTTAGCCGGTATAATTTTTTCTTGGAAAATGATGGAGGATACTGAGTTGGGAGAAGAACAACAACTGCTTCTGCATACGAGCGCCCAGTGCCAGAACCAGCTCAACAAAATACTGGATGACTCGGATCTTGATACCATCATTGACGGCTACTTGGACCTGGAAATGGTTGAGTTCACATTGCATGACGTACTGAATGCCGCTGTCAGTCAAGTCATGATGAAGATCAATGCCAAGAGCATCCGTGTTGTCCAAGATGCAGCGGAAGAGATCATGACTCAGACTTTATATGGGGATAGTCTTAGGCTTCAACAAGTCGTAGCTGATTTCTTAGCCGTATCAATTAGTTTTGTGCCAACTGGAGGCCAGCTTACTATCGAAGCTAATTTGACCGAAGATCAGTTAGGACAATCCGTTCATCTCGTGCATTTGGAGATCAGGATCACACACGCCGGTGGTGGGATTCCAGAAGCATTGCTGAACCAGATGTTTGGAAATGACGGAGACATATCTGAGGAGGGCATTAGCCTGCTCGTCAGCAGCAAACTGGTGAAGCTCATGAATGGAGACGTTCGTTATCTTAGGGAAGAAGGCAAATCAACCTTCATGATATCCGTGGAACTCGCGGCTGCATACAAGGTGAAGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1169

Amino Acids

129.05

Weight (kDa)

5.83

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 112 - 228 6.6e-35 PAS fold
GAF PF01590 262 - 444 1.5e-15 GAF domain
PHY PF00360 457 - 630 3.7e-54 Phytochrome region
PAS PF00989 664 - 778 5e-20 PAS fold
PAS_4 PF08448 673 - 782 2.6e-06 PAS fold
PAS PF00989 794 - 916 1.1e-22 PAS fold
HisKA PF00512 939 - 996 3e-09 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1050 - 1160 2.9e-11 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 2429
AccII CGCG 1 cut(s) 3482
AccIII TCCGGA 1 cut(s) 2850
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 6 cut(s) 46, 857, 1123, 1713, 2441, 2464
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 2 cut(s) 539, 1065
AfeI AGCGCT 1 cut(s) 2789
AfiI CCNNNNNNNGG 8 cut(s) 479, 497, 923, 2429, 2864, 3022, 3218, 3315
AflIII ACRYGT 1 cut(s) 1018
AjnI CCWGG 4 cut(s) 904, 909, 2571, 3015
AleI CACNNNNGTG 1 cut(s) 3309
AloI GAACNNNNNNTCC 4 cut(s) 2190, 2222, 3255, 3287
Alw21I GWGCWC 2 cut(s) 272, 2659
Alw26I GTCTC 8 cut(s) 18, 69, 892, 1210, 1492, 2280, 3354, 3417
Ama87I CYCGRG 2 cut(s) 265, 1612
Aor13HI TCCGGA 1 cut(s) 2850
Aor51HI AGCGCT 1 cut(s) 2789
AoxI GGCC 7 cut(s) 143, 558, 717, 741, 849, 907, 3220
ApaI GGGCCC 1 cut(s) 721
ApoI RAATTY 6 cut(s) 46, 857, 1123, 1713, 2441, 2464
ArsI GACNNNNNNTTYG 2 cut(s) 2706, 2738
Asp700I GAANNNNTTC 4 cut(s) 133, 407, 1883, 2637
AspA2I CCTAGG 2 cut(s) 311, 562
AspLEI GCGC 2 cut(s) 2790, 2942
AspS9I GGNCC 8 cut(s) 315, 559, 717, 718, 988, 1996, 2249, 3013
AsuC2I CCSGG 4 cut(s) 715, 1613, 1614, 2368
AsuHPI GGTGA 8 cut(s) 584, 694, 856, 1643, 1757, 2356, 2390, 3418
AsuNHI GCTAGC 2 cut(s) 388, 2753
AvaI CYCGRG 2 cut(s) 265, 1612
AvaII GGWCC 5 cut(s) 315, 988, 1996, 2249, 3013
AvrII CCTAGG 2 cut(s) 311, 562
BaeGI GKGCMC 1 cut(s) 721
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BamHI GGATCC 1 cut(s) 2541
BanII GRGCYC 5 cut(s) 272, 721, 1087, 1436, 1621
BauI CACGAG 1 cut(s) 3278
BbsI GAAGAC 3 cut(s) 126, 410, 2084
Bbv12I GWGCWC 2 cut(s) 272, 2659
BceAI ACGGC 2 cut(s) 3019, 3176
BcgI CGANNNNNNTGC 8 cut(s) 256, 290, 982, 992, 1016, 1026, 1804, 1838
BciT130I CCWGG 4 cut(s) 906, 911, 2573, 3017
BciVI GTATCC 1 cut(s) 2890
BclI TGATCA 2 cut(s) 663, 871
BcnI CCSGG 4 cut(s) 715, 1613, 1614, 2368
BcoDI GTCTC 8 cut(s) 18, 69, 892, 1210, 1492, 2280, 3354, 3417
BfmI CTRYAG 3 cut(s) 104, 1707, 2805
BfoI RGCGCY 2 cut(s) 2791, 2943
BfuI GTATCC 1 cut(s) 2890
BlnI CCTAGG 2 cut(s) 311, 562
Bme1390I CCNGG 8 cut(s) 715, 906, 911, 1613, 1614, 2368, 2573, 3017
Bme18I GGWCC 5 cut(s) 315, 988, 1996, 2249, 3013
BmeT110I CYCGRG 2 cut(s) 265, 1612
BmgT120I GGNCC 8 cut(s) 315, 559, 717, 718, 988, 1996, 2249, 3013
BmiI GGNNCC 9 cut(s) 718, 719, 915, 968, 1900, 2022, 2251, 2543, 2640
BmrFI CCNGG 8 cut(s) 715, 906, 911, 1613, 1614, 2368, 2573, 3017
BmrI ACTGGG 2 cut(s) 2736, 2938
BmtI GCTAGC 2 cut(s) 392, 2757
BmuI ACTGGG 2 cut(s) 2736, 2938
BoxI GACNNNNGTC 2 cut(s) 455, 2247
BpiI GAAGAC 3 cut(s) 126, 410, 2084
BpmI CTGGAG 2 cut(s) 932, 3237
BpuEI CTTGAG 1 cut(s) 1284
BpuMI CCSGG 4 cut(s) 715, 1613, 1614, 2368
BsaBI GATNNNNATC 2 cut(s) 3080, 3296
BsaI GGTCTC 1 cut(s) 892
BsaWI WCCGGW 1 cut(s) 2850
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 8 cut(s) 479, 497, 923, 2429, 2864, 3022, 3218, 3315
Bse118I RCCGGY 3 cut(s) 679, 2864, 3308
Bse1I ACTGG 9 cut(s) 1977, 2092, 2136, 2341, 2731, 2944, 2976, 3220, 3408
Bse3DI GCAATG 8 cut(s) 417, 604, 1128, 2180, 2478, 2668, 3035, 3329
Bse8I GATNNNNATC 2 cut(s) 3080, 3296
BseAI TCCGGA 1 cut(s) 2850
BseBI CCWGG 4 cut(s) 906, 911, 2573, 3017
BseJI GATNNNNATC 2 cut(s) 3080, 3296
BseLI CCNNNNNNNGG 8 cut(s) 479, 497, 923, 2429, 2864, 3022, 3218, 3315
BseMI GCAATG 8 cut(s) 417, 604, 1128, 2180, 2478, 2668, 3035, 3329
BseNI ACTGG 9 cut(s) 1977, 2092, 2136, 2341, 2731, 2944, 2976, 3220, 3408
BseRI GAGGAG 4 cut(s) 254, 1831, 2516, 3386
BseSI GKGCMC 1 cut(s) 721
BsgI GTGCAG 3 cut(s) 516, 531, 2454
Bsh1236I CGCG 1 cut(s) 3482
BshFI GGCC 7 cut(s) 145, 560, 719, 743, 851, 909, 3222
BsiHKAI GWGCWC 2 cut(s) 272, 2659
BsiHKCI CYCGRG 2 cut(s) 265, 1612
BsiSI CCGG 8 cut(s) 680, 714, 1613, 1896, 2368, 2851, 2865, 3309
BslFI GGGAC 5 cut(s) 24, 455, 497, 683, 2235
BslI CCNNNNNNNGG 8 cut(s) 479, 497, 923, 2429, 2864, 3022, 3218, 3315
BsmAI GTCTC 8 cut(s) 18, 69, 892, 1210, 1492, 2280, 3354, 3417
BsmBI CGTCTC 1 cut(s) 3417
BsmFI GGGAC 5 cut(s) 24, 455, 497, 683, 2235
BsmI GAATGC 6 cut(s) 439, 1883, 1885, 2275, 2684, 3058
BsnI GGCC 7 cut(s) 145, 560, 719, 743, 851, 909, 3222
Bso31I GGTCTC 1 cut(s) 892
BsoBI CYCGRG 2 cut(s) 265, 1612
Bsp120I GGGCCC 1 cut(s) 717
Bsp1286I GDGCHC 6 cut(s) 272, 721, 1087, 1436, 1621, 2659
Bsp13I TCCGGA 1 cut(s) 2850
Bsp1407I TGTACA 2 cut(s) 1479, 2395
BspANI GGCC 7 cut(s) 145, 560, 719, 743, 851, 909, 3222
BspEI TCCGGA 1 cut(s) 2850
BspFNI CGCG 1 cut(s) 3482
BspHI TCATGA 6 cut(s) 862, 1531, 3072, 3129, 3414, 3462
BspLI GGNNCC 9 cut(s) 718, 719, 915, 968, 1900, 2022, 2251, 2543, 2640
BspMAI CTGCAG 3 cut(s) 108, 1711, 2809
BspOI GCTAGC 2 cut(s) 392, 2757
BspTNI GGTCTC 1 cut(s) 892
BsrDI GCAATG 8 cut(s) 417, 604, 1128, 2180, 2478, 2668, 3035, 3329
BsrFI RCCGGY 3 cut(s) 679, 2864, 3308
BsrGI TGTACA 2 cut(s) 1479, 2395
BsrI ACTGG 9 cut(s) 1977, 2092, 2136, 2341, 2731, 2944, 2976, 3220, 3408
BssAI RCCGGY 3 cut(s) 679, 2864, 3308
BssSI CACGAG 1 cut(s) 3278
BssT1I CCWWGG 7 cut(s) 311, 562, 1413, 1671, 1826, 1905, 2245
Bst2BI CACGAG 1 cut(s) 3278
Bst2UI CCWGG 4 cut(s) 906, 911, 2573, 3017
Bst4CI ACNGT 9 cut(s) 185, 211, 375, 428, 457, 966, 1094, 2020, 2158
Bst6I CTCTTC 2 cut(s) 2807, 3117
BstAPI GCANNNNNTGC 2 cut(s) 539, 769
BstAUI TGTACA 2 cut(s) 1479, 2395
BstDSI CCRYGG 1 cut(s) 3471
BstEII GGTNACC 1 cut(s) 1177
BstFNI CGCG 1 cut(s) 3482
BstH2I RGCGCY 2 cut(s) 2791, 2943
BstHHI GCGC 2 cut(s) 2790, 2942
BstMAI GTCTC 8 cut(s) 18, 69, 892, 1210, 1492, 2280, 3354, 3417
BstMWI GCNNNNNNNGC 9 cut(s) 103, 428, 539, 685, 716, 746, 769, 901, 2946
BstNI CCWGG 4 cut(s) 906, 911, 2573, 3017
BstNSI RCATGY 3 cut(s) 230, 1022, 2556
BstPAI GACNNNNGTC 2 cut(s) 455, 2247
BstPI GGTNACC 1 cut(s) 1177
BstSCI CCNGG 8 cut(s) 713, 904, 909, 1611, 1612, 2366, 2571, 3015
BstSFI CTRYAG 3 cut(s) 104, 1707, 2805
BstSLI GKGCMC 1 cut(s) 721
BstUI CGCG 1 cut(s) 3482
BstV2I GAAGAC 3 cut(s) 126, 410, 2084
BstX2I RGATCY 5 cut(s) 1054, 1447, 2541, 2847, 2983
BstXI CCANNNNNNTGG 3 cut(s) 377, 2260, 3347
BstYI RGATCY 5 cut(s) 1054, 1447, 2541, 2847, 2983
BsuI GTATCC 1 cut(s) 2890
BsuRI GGCC 7 cut(s) 145, 560, 719, 743, 851, 909, 3222
BtgI CCRYGG 1 cut(s) 3471
BtsI GCAGTG 5 cut(s) 330, 528, 548, 1701, 2814
CciI TCATGA 6 cut(s) 862, 1531, 3072, 3129, 3414, 3462
CfoI GCGC 2 cut(s) 2790, 2942
Cfr10I RCCGGY 3 cut(s) 679, 2864, 3308
Cfr13I GGNCC 8 cut(s) 315, 559, 717, 718, 988, 1996, 2249, 3013
Cfr9I CCCGGG 1 cut(s) 1612
DraI TTTAAA 1 cut(s) 45
DraIII CACNNNGTG 2 cut(s) 539, 1065
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 2 cut(s) 2807, 3117
EarI CTCTTC 2 cut(s) 2807, 3117
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 7 cut(s) 311, 562, 1413, 1671, 1826, 1905, 2245
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 5 cut(s) 272, 721, 1087, 1436, 1621
Eco31I GGTCTC 1 cut(s) 892
Eco32I GATATC 2 cut(s) 2332, 3468
Eco47I GGWCC 5 cut(s) 315, 988, 1996, 2249, 3013
Eco47III AGCGCT 1 cut(s) 2789
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 2 cut(s) 265, 1612
Eco91I GGTNACC 1 cut(s) 1177
EcoICRI GAGCTC 1 cut(s) 270
EcoO109I RGGNCCY 3 cut(s) 559, 717, 718
EcoO65I GGTNACC 1 cut(s) 1177
EcoRI GAATTC 2 cut(s) 1123, 2464
EcoRII CCWGG 4 cut(s) 904, 909, 2571, 3015
EcoRV GATATC 2 cut(s) 2332, 3468
EcoT14I CCWWGG 7 cut(s) 311, 562, 1413, 1671, 1826, 1905, 2245
EcoT22I ATGCAT 1 cut(s) 1885
EcoT38I GRGCYC 5 cut(s) 272, 721, 1087, 1436, 1621
ErhI CCWWGG 7 cut(s) 311, 562, 1413, 1671, 1826, 1905, 2245
Esp3I CGTCTC 1 cut(s) 3417
FalI AAGNNNNNCTT 4 cut(s) 1349, 1381, 2627, 2659
FaqI GGGAC 5 cut(s) 24, 455, 497, 683, 2235
FauI CCCGC 1 cut(s) 290
FauNDI CATATG 1 cut(s) 1563
FbaI TGATCA 2 cut(s) 663, 871
FriOI GRGCYC 5 cut(s) 272, 721, 1087, 1436, 1621
GlaI GCGC 2 cut(s) 2789, 2941
GsuI CTGGAG 2 cut(s) 932, 3237
HaeII RGCGCY 2 cut(s) 2791, 2943
HaeIII GGCC 7 cut(s) 145, 560, 719, 743, 851, 909, 3222
HapII CCGG 8 cut(s) 680, 714, 1613, 1896, 2368, 2851, 2865, 3309
HhaI GCGC 2 cut(s) 2790, 2942
Hin6I GCGC 2 cut(s) 2788, 2940
HinP1I GCGC 2 cut(s) 2788, 2940
HincII GTYRAC 4 cut(s) 1665, 2085, 2101, 2484
HindII GTYRAC 4 cut(s) 1665, 2085, 2101, 2484
HindIII AAGCTT 2 cut(s) 734, 1043
HpaI GTTAAC 3 cut(s) 1665, 2085, 2484
HpaII CCGG 8 cut(s) 680, 714, 1613, 1896, 2368, 2851, 2865, 3309
HphI GGTGA 8 cut(s) 584, 694, 856, 1643, 1757, 2356, 2390, 3418
Hpy166II GTNNAC 5 cut(s) 1665, 2085, 2101, 2484, 3033
Hpy8I GTNNAC 5 cut(s) 1665, 2085, 2101, 2484, 3033
Hpy99I CGWCG 1 cut(s) 2020
HpyAV CCTTC 8 cut(s) 1018, 1825, 1952, 2369, 2708, 2835, 3440, 3469
HpyCH4III ACNGT 9 cut(s) 185, 211, 375, 428, 457, 966, 1094, 2020, 2158
HpyCH4IV ACGT 2 cut(s) 3045, 3426
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 428, 539, 685, 716, 746, 769, 901, 2946
HpySE526I ACGT 2 cut(s) 3045, 3426
HspAI GCGC 2 cut(s) 2788, 2940
Kpn2I TCCGGA 1 cut(s) 2850
Ksp22I TGATCA 2 cut(s) 663, 871
KspAI GTTAAC 3 cut(s) 1665, 2085, 2484
LmnI GCTCC 4 cut(s) 780, 913, 1466, 1818
MaeII ACGT 2 cut(s) 3045, 3426
MfeI CAATTG 2 cut(s) 750, 2391
MflI RGATCY 5 cut(s) 1054, 1447, 2541, 2847, 2983
MhlI GDGCHC 6 cut(s) 272, 721, 1087, 1436, 1621, 2659
MlyI GAGTC 5 cut(s) 251, 479, 1504, 2972, 3127
MmeI TCCRAC 2 cut(s) 394, 1317
Mph1103I ATGCAT 1 cut(s) 1885
MroI TCCGGA 1 cut(s) 2850
MroXI GAANNNNTTC 4 cut(s) 133, 407, 1883, 2637
MseI TTAA 9 cut(s) 44, 587, 1158, 1295, 1664, 2055, 2084, 2483, 2604
MslI CAYNNNNRTG 2 cut(s) 867, 3309
MspA1I CMGCKG 5 cut(s) 109, 1051, 1655, 3059, 3119
MspI CCGG 8 cut(s) 680, 714, 1613, 1896, 2368, 2851, 2865, 3309
MspR9I CCNGG 8 cut(s) 715, 906, 911, 1613, 1614, 2368, 2573, 3017
MunI CAATTG 2 cut(s) 750, 2391
Mva1269I GAATGC 6 cut(s) 439, 1883, 1885, 2275, 2684, 3058
MvaI CCWGG 4 cut(s) 906, 911, 2573, 3017
MvnI CGCG 1 cut(s) 3482
MwoI GCNNNNNNNGC 9 cut(s) 103, 428, 539, 685, 716, 746, 769, 901, 2946
NciI CCSGG 4 cut(s) 715, 1613, 1614, 2368
NdeI CATATG 1 cut(s) 1563
NheI GCTAGC 2 cut(s) 388, 2753
NlaIV GGNNCC 9 cut(s) 718, 719, 915, 968, 1900, 2022, 2251, 2543, 2640
NmeAIII GCCGAG 1 cut(s) 2156
NmuCI GTSAC 6 cut(s) 325, 1425, 1517, 1943, 1981, 2722
NsiI ATGCAT 1 cut(s) 1885
NspI RCATGY 3 cut(s) 230, 1022, 2556
OliI CACNNNNGTG 1 cut(s) 3309
PaeI GCATGC 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 265
PagI TCATGA 6 cut(s) 862, 1531, 3072, 3129, 3414, 3462
PceI AGGCCT 1 cut(s) 145
PciI ACATGT 1 cut(s) 1018
PcsI WCGNNNNNNNCGW 2 cut(s) 371, 1179
PctI GAATGC 6 cut(s) 439, 1883, 1885, 2275, 2684, 3058
PdmI GAANNNNTTC 4 cut(s) 133, 407, 1883, 2637
PfeI GAWTC 8 cut(s) 1190, 1568, 1608, 2141, 2361, 2576, 2854, 3319
PflMI CCANNNNNTGG 1 cut(s) 2429
PleI GAGTC 5 cut(s) 250, 479, 1504, 2972, 3127
PpsI GAGTC 5 cut(s) 250, 479, 1504, 2972, 3127
PscI ACATGT 1 cut(s) 1018
PshAI GACNNNNGTC 2 cut(s) 455, 2247
Psp124BI GAGCTC 1 cut(s) 272
Psp6I CCWGG 4 cut(s) 904, 909, 2571, 3015
PspEI GGTNACC 1 cut(s) 1177
PspGI CCWGG 4 cut(s) 904, 909, 2571, 3015
PspN4I GGNNCC 9 cut(s) 718, 719, 915, 968, 1900, 2022, 2251, 2543, 2640
PspOMI GGGCCC 1 cut(s) 717
PspPI GGNCC 8 cut(s) 315, 559, 717, 718, 988, 1996, 2249, 3013
PspXI VCTCGAGB 1 cut(s) 265
PstI CTGCAG 3 cut(s) 108, 1711, 2809
PsuI RGATCY 5 cut(s) 1054, 1447, 2541, 2847, 2983
PvuII CAGCTG 2 cut(s) 109, 1655
RseI CAYNNNNRTG 2 cut(s) 867, 3309
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 9 cut(s) 44, 587, 1158, 1295, 1664, 2055, 2084, 2483, 2604
Sau96I GGNCC 8 cut(s) 315, 559, 717, 718, 988, 1996, 2249, 3013
SchI GAGTC 5 cut(s) 251, 479, 1504, 2972, 3127
ScrFI CCNGG 8 cut(s) 715, 906, 911, 1613, 1614, 2368, 2573, 3017
SduI GDGCHC 6 cut(s) 272, 721, 1087, 1436, 1621, 2659
SfcI CTRYAG 3 cut(s) 104, 1707, 2805
Sfr274I CTCGAG 1 cut(s) 265
SgrAI CRCCGGYG 1 cut(s) 3308
SinI GGWCC 5 cut(s) 315, 988, 1996, 2249, 3013
SlaI CTCGAG 1 cut(s) 265
SmaI CCCGGG 1 cut(s) 1614
SmiMI CAYNNNNRTG 2 cut(s) 867, 3309
SmlI CTYRAG 2 cut(s) 265, 1299
SmoI CTYRAG 2 cut(s) 265, 1299
SphI GCATGC 1 cut(s) 230
SseBI AGGCCT 1 cut(s) 145
SspI AATATT 2 cut(s) 1441, 2427
SstI GAGCTC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 8 cut(s) 713, 904, 909, 1611, 1612, 2366, 2571, 3015
StyI CCWWGG 7 cut(s) 311, 562, 1413, 1671, 1826, 1905, 2245
TaaI ACNGT 9 cut(s) 185, 211, 375, 428, 457, 966, 1094, 2020, 2158
TaiI ACGT 2 cut(s) 3048, 3429
TaqI TCGA 8 cut(s) 266, 646, 1002, 1693, 1717, 2147, 2214, 3234
TaqII GACCGA 1 cut(s) 3263
TatI WGTACW 5 cut(s) 100, 1479, 1583, 2395, 2670
TauI GCSGC 3 cut(s) 743, 3059, 3485
TfiI GAWTC 8 cut(s) 1190, 1568, 1608, 2141, 2361, 2576, 2854, 3319
Tru1I TTAA 9 cut(s) 44, 587, 1158, 1295, 1664, 2055, 2084, 2483, 2604
Tru9I TTAA 9 cut(s) 44, 587, 1158, 1295, 1664, 2055, 2084, 2483, 2604
TseFI GTSAC 6 cut(s) 325, 1425, 1517, 1943, 1981, 2722
Tsp45I GTSAC 6 cut(s) 325, 1425, 1517, 1943, 1981, 2722
TspGWI ACGGA 5 cut(s) 1988, 3089, 3259, 3372, 3460
TspMI CCCGGG 1 cut(s) 1612
Van91I CCANNNNNTGG 1 cut(s) 2429
VpaK11BI GGWCC 5 cut(s) 315, 988, 1996, 2249, 3013
XapI RAATTY 6 cut(s) 46, 857, 1123, 1713, 2441, 2464
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 3 cut(s) 230, 1022, 2556
XhoI CTCGAG 1 cut(s) 265
XmaI CCCGGG 1 cut(s) 1612
XmaJI CCTAGG 2 cut(s) 311, 562
XmnI GAANNNNTTC 4 cut(s) 133, 407, 1883, 2637
Zsp2I ATGCAT 1 cut(s) 1885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.