FvH4_6g08760

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007386
Physical Location & Seq
Reverse (-)
5209614 .. 5215990
6377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08760.t2

Sequence Viewer

Length: 3375 bp
ATGTCGTCTTCAAGACCCAGTCACTCATCCAGCAATTCAGGGAGATCAAGACACAGTGCTAGAGTTATTGCTCAGACAACTGTAGATGCAAAGCTTCATGCAAACTTTGAGGAGTCGGGCAGTTCCTTTGACTACTCGAACTCAGTGCGTGTTAGCAGTGAAGTTACTGGGGATCAACAACCTAGGTCTGACAAAGTGACCACTGCTTATCTCCATCACATACAGAAAGGGAAGCTGATCCAGCCATTTGGGTGTTTGCTAGCCTTAGATGATAAAACATTCAGGGTCATTGCATACAGTGAGAATGCCCCTGAAATGCTGACTATGGTTAGTCATGCTGTCCCGAGTGTTGGGGATCACCCAGTTCTTGGCATAGGAACAGATGTAAGAACAATTTTCACAGGCCCTAGTGCCTCTGCATTGCATAAGGCCCTCGGGTTTGGGGAGGTTTCTCTCTTAAATCCCATCCTAGTCCATTGCAAGTCATCTGGAAAGCCTTTCTATGCTATAGTCCACCGGGTGACAGGTAGTTTGGTCATTGATTTTGAACCAGTCAAGCCGTATGAAGTCCCCATGACTGCTGCTGGAGCTCTGCAATCATACAAGCTTGCAGCCAAAGCAATTGCACGATTGCAGTCTTTGCCTAGTGGGAGCCTGGAGAGGCTTTGTGATACAATGGTTCAAGAGGTGTTTGAGCTTACTGGTTATGACAGGGTGATGGCCTATAAATTTCATGATGATGATCATGGGGAAGTGGTTGCTGAGCTTACCAAGCCTGGCCTGGAGCCGTACCTGGGTTTGCACTATCCATCCACTGATATACCTCAAGCTTCACGGTTCCTTTTTATGAAGAATAAGGTTCGTATGATTGTCGACTGTTGTGCAAAAAATGTCAAGGTCCTTCAAGATGAGAAGCTTCCTTTGGATCTAACATTGTGTGGTTCAACCCTCAGAGCCCCACATAGTTGCCATTTGCAATATATGGAGAACATGAACTCCATTGCTTCTCTTGTTATGGCAGTGGTGATCAATGAAGGGGATGATGAGGTTGCCGGTCCTGATTCTGCGCAGACTCAAAAAAGAAAGAGACTCTGGGGTTTAGTAGTATGTCATAACACAACTCCAAGGTTTGTCCCTTTCCCACTCAGATATGCCTGTGAGTTTCTAGCTCAAGTGTTTGCCATCCATGTGAATAAGGAATTAGAGTTGGAGGATCAGATGATTGAAAAGAACATCCTGCGCACACAAACGCTGTTGTGTGATATGCTGTTGCGTGATGCTCCTTTGGGTATTGTGTCACAAACACCTAATATTATGGATCTAGTGAAATGTGATGGGGCTGCCTTACTGTACAAGAACAAGATATGGAGACTTGGATTAACTCCAAGTGACTTCCAGATTCAGGACATATCCTTGTGGCTCTCTGAGTGCCATATGGATTCCACAGGTTTGAGTACTGATAGCTTGTATGATGCAGGTTTCCCTGGGGCTCTCGCTCTTGGTGATGTAGTATGTGGAATGGCAGCTGTGAAGATTACTTCCAAGGACATTATTTTTTGGTTCCGATCCCACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAACATGACCCGGATGAGAAGGACAATGGCTGGAAAATGCACCCTAGATCATCATTCAAGGCTTTCCTTGAAGTTGTCAAGACAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCAATTCATTCTTTGCAGCTTATTCTGAGGAATGCATTCAAGGATGTTGGAGACATGGATGTAAACAACAATGGAATCCAGATGCAGCTTAGTGACCTGAAAATTGATGGGGTGCAAGAACTGGAAGCAGTGACAGGTGAGATGGTTCGATTGATTGAAACAGCATCAGTGCCAATTTTGGCAGTTGATATTGAGGGATCAGTTAATGGGTGGAATACAAAAATTTCTGAGTTAACTGGTCTTCCTGTTGATAAAGCAATTGGAAAGAATTTGCTCACACTTGTGGAAGAATCTTCAACTATCATGGTGGGCAGGATGTTGGAGTTGGCATTGCAAGGCAAAGAGGAACAAAACATCCAATTCGAGATAAAAACACATGGTGCTAGGGCTGACTTTGGTCCCATCAGCTTAGTTGTGAATGCTTGTGCAAGCAGAGATATTCATGAAAATGTTGTGGGAGTGTGCTTTGTGGCCCAGGATATTACAGGTCAGAAGACTGTGATGGACAAGTTCACTCGGATTGAAGGTGATTACAAAGCAATTGTACAAAACCCAAATCCTTTGATACCCCCAATATTTGGCACTGATGAATTTGGCTGGTGTTCTGAGTGGAATCCAGCAATGACTAAGTCGACTGGTTGGAAACGAGAGGAGGTAATGGATAAAATGCTGTTGGGGGAGGTTTTTGGGATCCACATGGCATGTTGTCCTCTGAAGAATCAAGAAGCTTTTGTAAACCTTGGTGTTGTAATCAATCGCGCCATGACTGGTGAGGTGTCCGAAAAGGTTCCTTTTGGTTTCTGGAATCGGGGTGGAAAGTACACTGAATGTTTGTTGTGTGTAAGTAAGAAATTGGACAGTGAGGGTGCAGTCACTGGAGTCTTTTGCTTTTTGCAGCTTGCTAGCCTAGAATTGCAACAAGCACTTCATGTCCAACGTTTATCTGAACAAACTGCTGTGAAGAGATTTAAAGCATTAGCTTATATCAAAAGGCAGATCAGGAATCCTTTGTCTGGAATACTATTTTCTCGGAAAATGATCGAGGGTACTGAGTTGGGAGCAGAACAAAAACAGCTCATACATACCAGTGCCCAGTGCCAGCAGCAGCTCAGCAAAATACTAGACGACTCAGATCTTGATAGCATCATTGATGGCTACTTGGACCTGGAAATGGTTGAGTTCACTTTGCAGGAAGTATTGGTTGCCTCTATTAGTCAAGTCATGATTAAGAGCAGTGCTAAGAGTATCCGGATTGTCCAAGATGCGAATGAAGAGATAATGACTGAGACATTGTATGGTGATAGTCTTAGGCTTCAACAAGTCTTGGCTGATTTCTTATCAGTGTCGGTTAATTACATGCCGTCTGGAGGCCAGCTTACTCTAGCAACGAATTTGACAAAAGATCAGCTGGGTCAATCTGTTCATCTTGCACATTTGGAATTCAGGATATCACATGCGGGCGGTGGGATTCCAGAAGGATTACTGAACCAGATGTTTGGAACAGATGGTGACATATCTGAAGAAGGCATTAGCCTACTTATAAGCCGAAAGCTAGTGAAGCTCATGAATGGAGATGTACAGTATCTCCGGGAAGCAGGGAAGTCGAGCTTCATCATATCCGCGGAACTTGCTGCTGCACATATGATCAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1125

Amino Acids

124.07

Weight (kDa)

5.68

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 69 - 185 3.2e-35 PAS fold
GAF PF01590 219 - 400 7.3e-16 GAF domain
PHY PF00360 414 - 587 1.1e-54 Phytochrome region
PAS PF00989 620 - 734 7.8e-21 PAS fold
PAS PF00989 750 - 872 3.6e-20 PAS fold
HisKA PF00512 898 - 954 5.1e-09 His Kinase A (phospho-acceptor) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3260
Acc16I TGCGCA 2 cut(s) 1068, 1241
Acc36I ACCTGC 1 cut(s) 1466
AccB7I CCANNNNNTGG 2 cut(s) 368, 2297
AccI GTMKAC 2 cut(s) 873, 2351
AccII CGCG 2 cut(s) 2478, 3341
AccIII TCCGGA 1 cut(s) 2967
AciI CCGC 4 cut(s) 3176, 3180, 3339, 3341
AclI AACGTT 1 cut(s) 2656
AcsI RAATTY 6 cut(s) 728, 1941, 1987, 2309, 3109, 3158
AcuI CTGAAG 2 cut(s) 2453, 3258
AdeI CACNNNGTG 2 cut(s) 520, 2099
AfaI GTAC 7 cut(s) 791, 1352, 1456, 2265, 2540, 2767, 3297
AfiI CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1402, 2297, 2732, 2890, 3086
AjnI CCWGG 7 cut(s) 654, 775, 780, 792, 1483, 2193, 2883
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AleI CACNNNNGTG 1 cut(s) 2000
AloI GAACNNNNNNTCC 4 cut(s) 980, 1012, 2058, 2090
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 4 cut(s) 1081, 1363, 1764, 2999
AlwNI CAGNNNCTG 1 cut(s) 2594
Ama87I CYCGRG 2 cut(s) 343, 434
Aor13HI TCCGGA 1 cut(s) 2967
AoxI GGCC 6 cut(s) 403, 429, 720, 778, 2190, 3088
ApoI RAATTY 6 cut(s) 728, 1941, 1987, 2309, 3109, 3158
ArsI GACNNNNNNTTYG 2 cut(s) 514, 546
Asp700I GAANNNNTTC 2 cut(s) 1754, 2505
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 3 cut(s) 1069, 1242, 2480
AspS9I GGNCC 8 cut(s) 404, 430, 898, 1055, 2117, 2191, 2881, 3369
AsuC2I CCSGG 3 cut(s) 518, 1613, 3308
AsuNHI GCTAGC 2 cut(s) 259, 2621
AvaI CYCGRG 2 cut(s) 343, 434
AvaII GGWCC 5 cut(s) 898, 1055, 2117, 2881, 3369
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 2812
BaeI ACNNNNGTAYC 2 cut(s) 663, 696
BamHI GGATCC 1 cut(s) 2409
BanII GRGCYC 3 cut(s) 592, 958, 1492
BbsI GAAGAC 2 cut(s) 1952, 2219
Bbv12I GWGCWC 1 cut(s) 592
BceAI ACGGC 3 cut(s) 544, 772, 3064
BcgI CGANNNNNNTGC 6 cut(s) 127, 161, 863, 897, 3303, 3337
BciT130I CCWGG 7 cut(s) 656, 777, 782, 794, 1485, 2195, 2885
BciVI GTATCC 1 cut(s) 2975
BclI TGATCA 3 cut(s) 742, 1026, 3363
BcnI CCSGG 3 cut(s) 518, 1613, 3308
BcoDI GTCTC 4 cut(s) 1081, 1363, 1764, 2999
BfmI CTRYAG 3 cut(s) 81, 507, 1578
BfuAI ACCTGC 1 cut(s) 1466
BfuI GTATCC 1 cut(s) 2975
BglII AGATCT 1 cut(s) 2851
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 2 cut(s) 762, 2828
BmcAI AGTACT 1 cut(s) 1456
Bme18I GGWCC 5 cut(s) 898, 1055, 2117, 2881, 3369
BmeT110I CYCGRG 2 cut(s) 343, 434
BmgT120I GGNCC 8 cut(s) 404, 430, 898, 1055, 2117, 2191, 2881, 3369
BmiI GGNNCC 7 cut(s) 653, 786, 839, 1562, 2119, 2411, 2508
BmrI ACTGGG 4 cut(s) 12, 177, 356, 2806
BmsI GCATC 8 cut(s) 76, 1267, 1462, 1708, 1791, 1892, 2871, 2971
BmtI GCTAGC 2 cut(s) 263, 2625
BmuI ACTGGG 4 cut(s) 12, 177, 356, 2806
BoxI GACNNNNGTC 1 cut(s) 2115
BpiI GAAGAC 2 cut(s) 1952, 2219
BpmI CTGGAG 5 cut(s) 606, 677, 803, 2616, 3105
Bpu1102I GCTNAGC 2 cut(s) 762, 2828
BpuEI CTTGAG 2 cut(s) 810, 1155
BpuMI CCSGG 3 cut(s) 518, 1613, 3308
BsaBI GATNNNNATC 1 cut(s) 741
BsaWI WCCGGW 1 cut(s) 2967
BsaXI ACNNNNNCTCC 4 cut(s) 980, 1010, 3288, 3318
Bsc4I CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1402, 2297, 2732, 2890, 3086
Bse118I RCCGGY 1 cut(s) 1052
Bse3DI GCAATG 6 cut(s) 288, 419, 475, 999, 2048, 2346
Bse8I GATNNNNATC 1 cut(s) 741
BseAI TCCGGA 1 cut(s) 2967
BseBI CCWGG 7 cut(s) 656, 777, 782, 794, 1485, 2195, 2885
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1402, 2297, 2732, 2890, 3086
BseMI GCAATG 6 cut(s) 288, 419, 475, 999, 2048, 2346
BseRI GAGGAG 2 cut(s) 125, 2384
BseSI GKGCMC 1 cut(s) 2812
BseYI CCCAGC 1 cut(s) 3127
BsgI GTGCAG 2 cut(s) 2607, 3339
Bsh1236I CGCG 2 cut(s) 2478, 3341
BshFI GGCC 6 cut(s) 405, 431, 722, 780, 2192, 3090
BsiHKAI GWGCWC 1 cut(s) 592
BsiHKCI CYCGRG 2 cut(s) 343, 434
BsiSI CCGG 5 cut(s) 517, 1053, 1613, 2968, 3307
BslFI GGGAC 4 cut(s) 326, 554, 1118, 2103
BslI CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1402, 2297, 2732, 2890, 3086
BsmAI GTCTC 4 cut(s) 1081, 1363, 1764, 2999
BsmFI GGGAC 4 cut(s) 326, 554, 1118, 2103
BsmI GAATGC 4 cut(s) 310, 1754, 1756, 2143
BsnI GGCC 6 cut(s) 405, 431, 722, 780, 2192, 3090
BsoBI CYCGRG 2 cut(s) 343, 434
Bsp1286I GDGCHC 4 cut(s) 592, 958, 1492, 2812
Bsp13I TCCGGA 1 cut(s) 2967
Bsp1407I TGTACA 3 cut(s) 1350, 2263, 3295
Bsp1720I GCTNAGC 2 cut(s) 762, 2828
Bsp19I CCATGG 1 cut(s) 1697
BspACI CCGC 4 cut(s) 3176, 3180, 3339, 3341
BspANI GGCC 6 cut(s) 405, 431, 722, 780, 2192, 3090
BspEI TCCGGA 1 cut(s) 2967
BspFNI CGCG 2 cut(s) 2478, 3341
BspHI TCATGA 4 cut(s) 733, 2161, 2940, 3282
BspLI GGNNCC 7 cut(s) 653, 786, 839, 1562, 2119, 2411, 2508
BspMAI CTGCAG 1 cut(s) 1582
BspMI ACCTGC 1 cut(s) 1466
BspOI GCTAGC 2 cut(s) 263, 2625
BsrDI GCAATG 6 cut(s) 288, 419, 475, 999, 2048, 2346
BsrFI RCCGGY 1 cut(s) 1052
BsrGI TGTACA 3 cut(s) 1350, 2263, 3295
BssAI RCCGGY 1 cut(s) 1052
BssT1I CCWWGG 5 cut(s) 182, 1124, 1542, 1697, 2458
Bst2UI CCWGG 7 cut(s) 656, 777, 782, 794, 1485, 2195, 2885
Bst4CI ACNGT 9 cut(s) 56, 82, 299, 837, 878, 1350, 2218, 2579, 3300
Bst6I CTCTTC 2 cut(s) 2675, 2985
BstAPI GCANNNNNTGC 1 cut(s) 640
BstAUI TGTACA 3 cut(s) 1350, 2263, 3295
BstC8I GCNNGC 8 cut(s) 261, 609, 2149, 2619, 2623, 2819, 3092, 3178
BstDSI CCRYGG 2 cut(s) 1697, 3339
BstFNI CGCG 2 cut(s) 2478, 3341
BstHHI GCGC 3 cut(s) 1069, 1242, 2480
BstMAI GTCTC 4 cut(s) 1081, 1363, 1764, 2999
BstMWI GCNNNNNNNGC 7 cut(s) 241, 587, 617, 640, 772, 3277, 3347
BstNI CCWGG 7 cut(s) 656, 777, 782, 794, 1485, 2195, 2885
BstNSI RCATGY 3 cut(s) 2424, 3079, 3176
BstPAI GACNNNNGTC 1 cut(s) 2115
BstSFI CTRYAG 3 cut(s) 81, 507, 1578
BstSLI GKGCMC 1 cut(s) 2812
BstUI CGCG 2 cut(s) 2478, 3341
BstV2I GAAGAC 2 cut(s) 1952, 2219
BstX2I RGATCY 4 cut(s) 925, 1318, 2409, 2851
BstXI CCANNNNNNTGG 2 cut(s) 248, 3215
BstYI RGATCY 4 cut(s) 925, 1318, 2409, 2851
BsuI GTATCC 1 cut(s) 2975
BsuRI GGCC 6 cut(s) 405, 431, 722, 780, 2192, 3090
BtgI CCRYGG 2 cut(s) 1697, 3339
BtsI GCAGTG 6 cut(s) 163, 201, 1026, 1572, 1854, 2959
BveI ACCTGC 1 cut(s) 1466
Cac8I GCNNGC 8 cut(s) 261, 609, 2149, 2619, 2623, 2819, 3092, 3178
CaiI CAGNNNCTG 1 cut(s) 2594
CciI TCATGA 4 cut(s) 733, 2161, 2940, 3282
CfoI GCGC 3 cut(s) 1069, 1242, 2480
Cfr10I RCCGGY 1 cut(s) 1052
Cfr13I GGNCC 8 cut(s) 404, 430, 898, 1055, 2117, 2191, 2881, 3369
Cfr42I CCGCGG 1 cut(s) 3342
Csp6I GTAC 7 cut(s) 790, 1351, 1455, 2264, 2539, 2766, 3296
CviQI GTAC 7 cut(s) 790, 1351, 1455, 2264, 2539, 2766, 3296
DraI TTTAAA 1 cut(s) 2689
DraIII CACNNNGTG 2 cut(s) 520, 2099
Eam1104I CTCTTC 2 cut(s) 2675, 2985
EarI CTCTTC 2 cut(s) 2675, 2985
Ecl136II GAGCTC 1 cut(s) 590
Eco130I CCWWGG 5 cut(s) 182, 1124, 1542, 1697, 2458
Eco24I GRGCYC 3 cut(s) 592, 958, 1492
Eco32I GATATC 1 cut(s) 3168
Eco47I GGWCC 5 cut(s) 898, 1055, 2117, 2881, 3369
Eco53kI GAGCTC 1 cut(s) 590
Eco57I CTGAAG 2 cut(s) 2453, 3258
Eco88I CYCGRG 2 cut(s) 343, 434
EcoICRI GAGCTC 1 cut(s) 590
EcoO109I RGGNCCY 4 cut(s) 404, 430, 898, 3369
EcoRI GAATTC 1 cut(s) 3158
EcoRII CCWGG 7 cut(s) 654, 775, 780, 792, 1483, 2193, 2883
EcoRV GATATC 1 cut(s) 3168
EcoT14I CCWWGG 5 cut(s) 182, 1124, 1542, 1697, 2458
EcoT22I ATGCAT 1 cut(s) 1756
EcoT38I GRGCYC 3 cut(s) 592, 958, 1492
ErhI CCWWGG 5 cut(s) 182, 1124, 1542, 1697, 2458
FalI AAGNNNNNCTT 2 cut(s) 3311, 3343
FaqI GGGAC 4 cut(s) 326, 554, 1118, 2103
FauI CCCGC 1 cut(s) 3169
FauNDI CATATG 2 cut(s) 1434, 3360
FbaI TGATCA 3 cut(s) 742, 1026, 3363
FblI GTMKAC 2 cut(s) 873, 2351
FriOI GRGCYC 3 cut(s) 592, 958, 1492
FspI TGCGCA 2 cut(s) 1068, 1241
GlaI GCGC 3 cut(s) 1068, 1241, 2479
GsaI CCCAGC 1 cut(s) 3131
GsuI CTGGAG 5 cut(s) 606, 677, 803, 2616, 3105
HaeIII GGCC 6 cut(s) 405, 431, 722, 780, 2192, 3090
HapII CCGG 5 cut(s) 517, 1053, 1613, 2968, 3307
HhaI GCGC 3 cut(s) 1069, 1242, 2480
Hin6I GCGC 3 cut(s) 1067, 1240, 2478
HinP1I GCGC 3 cut(s) 1067, 1240, 2478
HincII GTYRAC 3 cut(s) 874, 1953, 2352
HindII GTYRAC 3 cut(s) 874, 1953, 2352
HindIII AAGCTT 5 cut(s) 92, 605, 828, 914, 2445
HpaI GTTAAC 1 cut(s) 1953
HpaII CCGG 5 cut(s) 517, 1053, 1613, 2968, 3307
Hpy166II GTNNAC 9 cut(s) 514, 874, 1783, 1953, 2232, 2352, 2455, 2541, 2901
Hpy8I GTNNAC 9 cut(s) 514, 874, 1783, 1953, 2232, 2352, 2455, 2541, 2901
HpyAV CCTTC 7 cut(s) 911, 1028, 1615, 1696, 2237, 3188, 3236
HpyCH4III ACNGT 9 cut(s) 56, 82, 299, 837, 878, 1350, 2218, 2579, 3300
HpyCH4IV ACGT 1 cut(s) 2656
HpyF10VI GCNNNNNNNGC 7 cut(s) 241, 587, 617, 640, 772, 3277, 3347
HpySE526I ACGT 1 cut(s) 2656
HspAI GCGC 3 cut(s) 1067, 1240, 2478
Kpn2I TCCGGA 1 cut(s) 2967
Ksp22I TGATCA 3 cut(s) 742, 1026, 3363
KspAI GTTAAC 1 cut(s) 1953
KspI CCGCGG 1 cut(s) 3342
LmnI GCTCC 6 cut(s) 587, 651, 784, 1285, 1689, 2777
LweI GCATC 8 cut(s) 76, 1267, 1462, 1708, 1791, 1892, 2871, 2971
MaeII ACGT 1 cut(s) 2656
MfeI CAATTG 3 cut(s) 621, 1977, 2259
MflI RGATCY 4 cut(s) 925, 1318, 2409, 2851
MhlI GDGCHC 4 cut(s) 592, 958, 1492, 2812
MlyI GAGTC 5 cut(s) 122, 1066, 1083, 2607, 2840
MmeI TCCRAC 5 cut(s) 1188, 1747, 2019, 2339, 2677
Mph1103I ATGCAT 1 cut(s) 1756
MroI TCCGGA 1 cut(s) 2967
MroXI GAANNNNTTC 2 cut(s) 1754, 2505
MseI TTAA 7 cut(s) 458, 1379, 1923, 1952, 2688, 2946, 3069
MslI CAYNNNNRTG 6 cut(s) 250, 738, 1187, 2000, 2166, 2805
MspA1I CMGCKG 3 cut(s) 1526, 3127, 3341
MspI CCGG 5 cut(s) 517, 1053, 1613, 2968, 3307
MunI CAATTG 3 cut(s) 621, 1977, 2259
Mva1269I GAATGC 4 cut(s) 310, 1754, 1756, 2143
MvaI CCWGG 7 cut(s) 656, 777, 782, 794, 1485, 2195, 2885
MvnI CGCG 2 cut(s) 2478, 3341
MwoI GCNNNNNNNGC 7 cut(s) 241, 587, 617, 640, 772, 3277, 3347
NciI CCSGG 3 cut(s) 518, 1613, 3308
NcoI CCATGG 1 cut(s) 1697
NdeI CATATG 2 cut(s) 1434, 3360
NheI GCTAGC 2 cut(s) 259, 2621
NlaIV GGNNCC 7 cut(s) 653, 786, 839, 1562, 2119, 2411, 2508
NmuCI GTSAC 9 cut(s) 20, 196, 520, 1296, 1388, 1811, 1849, 2590, 3227
NsbI TGCGCA 2 cut(s) 1068, 1241
NsiI ATGCAT 1 cut(s) 1756
NspI RCATGY 3 cut(s) 2424, 3079, 3176
OliI CACNNNNGTG 1 cut(s) 2000
PagI TCATGA 4 cut(s) 733, 2161, 2940, 3282
PasI CCCWGGG 1 cut(s) 1484
PctI GAATGC 4 cut(s) 310, 1754, 1756, 2143
PdmI GAANNNNTTC 2 cut(s) 1754, 2505
PflFI GACNNNGTC 2 cut(s) 18, 2347
PflMI CCANNNNNTGG 2 cut(s) 368, 2297
PfoI TCCNGGA 1 cut(s) 3306
PleI GAGTC 5 cut(s) 121, 1066, 1083, 2606, 2840
PpsI GAGTC 5 cut(s) 121, 1066, 1083, 2606, 2840
PpuMI RGGWCCY 2 cut(s) 898, 3369
PshAI GACNNNNGTC 1 cut(s) 2115
PsiI TTATAA 1 cut(s) 3260
Psp124BI GAGCTC 1 cut(s) 592
Psp1406I AACGTT 1 cut(s) 2656
Psp5II RGGWCCY 2 cut(s) 898, 3369
Psp6I CCWGG 7 cut(s) 654, 775, 780, 792, 1483, 2193, 2883
PspFI CCCAGC 1 cut(s) 3127
PspGI CCWGG 7 cut(s) 654, 775, 780, 792, 1483, 2193, 2883
PspN4I GGNNCC 7 cut(s) 653, 786, 839, 1562, 2119, 2411, 2508
PspPI GGNCC 8 cut(s) 404, 430, 898, 1055, 2117, 2191, 2881, 3369
PspPPI RGGWCCY 2 cut(s) 898, 3369
PstI CTGCAG 1 cut(s) 1582
PstNI CAGNNNCTG 1 cut(s) 2594
PsuI RGATCY 4 cut(s) 925, 1318, 2409, 2851
PsyI GACNNNGTC 2 cut(s) 18, 2347
PvuII CAGCTG 2 cut(s) 1526, 3127
RsaI GTAC 7 cut(s) 791, 1352, 1456, 2265, 2540, 2767, 3297
RsaNI GTAC 7 cut(s) 790, 1351, 1455, 2264, 2539, 2766, 3296
RseI CAYNNNNRTG 6 cut(s) 250, 738, 1187, 2000, 2166, 2805
SacI GAGCTC 1 cut(s) 592
SacII CCGCGG 1 cut(s) 3342
SalI GTCGAC 2 cut(s) 872, 2350
SaqAI TTAA 7 cut(s) 458, 1379, 1923, 1952, 2688, 2946, 3069
Sau96I GGNCC 8 cut(s) 404, 430, 898, 1055, 2117, 2191, 2881, 3369
ScaI AGTACT 1 cut(s) 1456
SchI GAGTC 5 cut(s) 122, 1066, 1083, 2607, 2840
SduI GDGCHC 4 cut(s) 592, 958, 1492, 2812
SfaNI GCATC 8 cut(s) 76, 1267, 1462, 1708, 1791, 1892, 2871, 2971
SfcI CTRYAG 3 cut(s) 81, 507, 1578
Sfr303I CCGCGG 1 cut(s) 3342
SgrBI CCGCGG 1 cut(s) 3342
SinI GGWCC 5 cut(s) 898, 1055, 2117, 2881, 3369
SmiMI CAYNNNNRTG 6 cut(s) 250, 738, 1187, 2000, 2166, 2805
SmlI CTYRAG 2 cut(s) 825, 1170
SmoI CTYRAG 2 cut(s) 825, 1170
SsiI CCGC 4 cut(s) 3176, 3180, 3339, 3341
SspI AATATT 2 cut(s) 1312, 2295
SstI GAGCTC 1 cut(s) 592
StyI CCWWGG 5 cut(s) 182, 1124, 1542, 1697, 2458
TaaI ACNGT 9 cut(s) 56, 82, 299, 837, 878, 1350, 2218, 2579, 3300
TaiI ACGT 1 cut(s) 2659
TaqI TCGA 7 cut(s) 137, 873, 1867, 2082, 2351, 2760, 3323
TatI WGTACW 5 cut(s) 1350, 1454, 2263, 2538, 3295
Tru1I TTAA 7 cut(s) 458, 1379, 1923, 1952, 2688, 2946, 3069
Tru9I TTAA 7 cut(s) 458, 1379, 1923, 1952, 2688, 2946, 3069
TseFI GTSAC 9 cut(s) 20, 196, 520, 1296, 1388, 1811, 1849, 2590, 3227
Tsp45I GTSAC 9 cut(s) 20, 196, 520, 1296, 1388, 1811, 1849, 2590, 3227
Tth111I GACNNNGTC 2 cut(s) 18, 2347
Van91I CCANNNNNTGG 2 cut(s) 368, 2297
VpaK11BI GGWCC 5 cut(s) 898, 1055, 2117, 2881, 3369
XapI RAATTY 6 cut(s) 728, 1941, 1987, 2309, 3109, 3158
XceI RCATGY 3 cut(s) 2424, 3079, 3176
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 2 cut(s) 873, 2351
XmnI GAANNNNTTC 2 cut(s) 1754, 2505
ZrmI AGTACT 1 cut(s) 1456
Zsp2I ATGCAT 1 cut(s) 1756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.