Rorug03G0032600

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007386
Physical Location & Seq
Reverse (-)
2597102 .. 2597644
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0032600.1

Sequence Viewer

Length: 543 bp
ATGAAGAGAAAGACGTTGAGGGAACTAGAGGTTGAAACCGCCATTCAGCTACTGCAAAAGCGGCTGAAGCCCCGACCTGCCAAGTACTTGGAGGAGACCCGGAGCCTAGAGGGTCCATGGAAGGCTGCCTTTCCTGCTGGGACACCAAGGTCACTTTTGGACTCGCCACTCTACCATTCTTTCAAGTGGGGTTTCTCGAATCTTGAAGGAGCACTCGAAGAAGGGGGAAAGCTGTACAAGAATAGCAACAGAGTCTATCTATTCGGCTCCATGGAGGAGGCCATGGTTAAAAGAGAAGTGGTTGCTTTGATCCCAGTGGTGGTGGCCGTTGTTTCGGCTTCTCCGCCTTCCAATGAGCTTGGACTTGTTTTAAGTGAGGGAAAAGTGGAAGAGATAATTCCGATGAAGAGATTGAAGACAGACTGGGCTCCGTATGTTCCTTTGGACAAGAGAGTAGACAAAGAAGGTCCTGAAATCTTTGTCTTGAGCTGCAAGCAAAGAACGGCTGCTCACAAACACAAAAAATGTCAAGGGAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

180

Amino Acids

20.3

Weight (kDa)

9.54

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 456
AciI CCGC 3 cut(s) 39, 61, 344
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 2 cut(s) 86, 236
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 4 cut(s) 35, 184, 206, 415
AluBI AGCT 4 cut(s) 49, 232, 358, 489
AluI AGCT 4 cut(s) 49, 232, 358, 489
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 304
AlwNI CAGNNNCTG 1 cut(s) 52
AoxI GGCC 2 cut(s) 279, 324
ApeKI GCWGC 3 cut(s) 125, 489, 506
AspS9I GGNCC 2 cut(s) 113, 467
AsuC2I CCSGG 1 cut(s) 100
AvaII GGWCC 2 cut(s) 113, 467
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 112, 476, 493
BceAI ACGGC 3 cut(s) 311, 519, 523
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 26, 107
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 4 cut(s) 62, 126, 490, 507
BlsI GCNGC 4 cut(s) 63, 127, 491, 508
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 2 cut(s) 113, 467
BmgT120I GGNCC 2 cut(s) 113, 467
BmiI GGNNCC 4 cut(s) 104, 114, 268, 429
BmrFI CCNGG 1 cut(s) 100
BmrI ACTGGG 2 cut(s) 308, 433
BmuI ACTGGG 2 cut(s) 308, 433
BpiI GAAGAC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 4 cut(s) 116, 146, 270, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 2 cut(s) 314, 428
BseDI CCNNGG 4 cut(s) 116, 146, 270, 282
BseLI CCNNNNNNNGG 1 cut(s) 319
BseNI ACTGG 2 cut(s) 314, 428
BseRI GAGGAG 2 cut(s) 107, 290
BseXI GCAGC 3 cut(s) 112, 476, 493
BseYI CCCAGC 1 cut(s) 137
BshFI GGCC 2 cut(s) 281, 326
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 281, 326
Bso31I GGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 214, 430
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 3 cut(s) 116, 270, 282
BspACI CCGC 3 cut(s) 39, 61, 344
BspANI GGCC 2 cut(s) 281, 326
BspLI GGNNCC 4 cut(s) 104, 114, 268, 429
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 314, 428
BssECI CCNNGG 4 cut(s) 116, 146, 270, 282
BssMI GATC 1 cut(s) 309
BssT1I CCWWGG 4 cut(s) 116, 146, 270, 282
Bst6I CTCTTC 2 cut(s) 384, 401
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 494
BstDSI CCRYGG 3 cut(s) 116, 270, 282
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 3 cut(s) 61, 67, 134
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 3 cut(s) 112, 476, 493
BstV2I GAAGAC 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 88
BsuRI GGCC 2 cut(s) 281, 326
BtgI CCRYGG 3 cut(s) 116, 270, 282
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 494
CaiI CAGNNNCTG 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 113, 467
Csp6I GTAC 2 cut(s) 85, 235
CviAII CATG 3 cut(s) 117, 271, 283
CviQI GTAC 2 cut(s) 85, 235
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 384, 401
EarI CTCTTC 2 cut(s) 384, 401
EciI GGCGGA 1 cut(s) 333
Eco130I CCWWGG 4 cut(s) 116, 146, 270, 282
Eco24I GRGCYC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 113, 467
Eco57I CTGAAG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 467
EcoT14I CCWWGG 4 cut(s) 116, 146, 270, 282
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 4 cut(s) 116, 146, 270, 282
FaeI CATG 3 cut(s) 120, 274, 286
FaiI YATR 4 cut(s) 118, 272, 284, 435
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 154
FatI CATG 3 cut(s) 116, 270, 282
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 4 cut(s) 62, 126, 490, 507
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 62, 126, 490, 507
FspBI CTAG 2 cut(s) 26, 107
GluI GCNGC 4 cut(s) 62, 126, 490, 507
GsaI CCCAGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 281, 326
HapII CCGG 1 cut(s) 100
Hin1II CATG 3 cut(s) 120, 274, 286
HinfI GANTC 3 cut(s) 161, 199, 252
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 4 cut(s) 196, 203, 470, 484
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 5 cut(s) 115, 200, 215, 357, 458
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 55, 492
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 67, 134
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 3 cut(s) 120, 274, 286
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 4 cut(s) 102, 209, 272, 433
LpnPI CCDG 7 cut(s) 90, 113, 123, 147, 327, 409, 483
Lsp1109I GCAGC 3 cut(s) 112, 476, 493
MaeI CTAG 2 cut(s) 26, 107
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 150
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 5 cut(s) 16, 230, 401, 418, 427
MhlI GDGCHC 2 cut(s) 214, 430
MluCI AATT 1 cut(s) 396
MlyI GAGTC 2 cut(s) 155, 261
MnlI CCTC 7 cut(s) 12, 22, 85, 103, 268, 271, 370
MseI TTAA 2 cut(s) 288, 371
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 100
MwoI GCNNNNNNNGC 3 cut(s) 61, 67, 134
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 3 cut(s) 116, 270, 282
NdeII GATC 1 cut(s) 309
NlaIII CATG 3 cut(s) 120, 274, 286
NlaIV GGNNCC 4 cut(s) 104, 114, 268, 429
NmuCI GTSAC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 4 cut(s) 63, 127, 491, 508
PleI GAGTC 2 cut(s) 155, 260
PpsI GAGTC 2 cut(s) 155, 260
PpuMI RGGWCCY 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 137
PspN4I GGNNCC 4 cut(s) 104, 114, 268, 429
PspPI GGNCC 2 cut(s) 113, 467
PspPPI RGGWCCY 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 52
RsaI GTAC 2 cut(s) 86, 236
RsaNI GTAC 2 cut(s) 85, 235
SaqAI TTAA 2 cut(s) 288, 371
SatI GCNGC 4 cut(s) 62, 126, 490, 507
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 113, 467
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 2 cut(s) 155, 261
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 2 cut(s) 214, 430
SetI ASST 9 cut(s) 17, 33, 51, 79, 152, 234, 360, 469, 491
SinI GGWCC 2 cut(s) 113, 467
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 1 cut(s) 396
SsiI CCGC 3 cut(s) 39, 61, 344
SspMI CTAG 2 cut(s) 26, 107
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 4 cut(s) 116, 146, 270, 282
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 197, 216
TasI AATT 1 cut(s) 396
TatI WGTACW 2 cut(s) 84, 234
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 288, 371
Tru9I TTAA 2 cut(s) 288, 371
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 3 cut(s) 125, 489, 506
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 17, 419
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 113, 467
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 2 cut(s) 26, 107
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.