AT1G09610

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013922
Physical Location & Seq
Forward (+)
3111694 .. 3112873
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09610.1

Sequence Viewer

Length: 849 bp
ATGAGGCCTAAAGCAAATCAAAACCACAAGCTGAAGGTTCTCCTTGTTTTTCTTCTTGCCACCTTAATTCTCATCTTCATCGTGAGATCAACTCTGACATCTTCACAGGAACACCAGACTCCACAAGAGACAAGATCAACGCGTTGCTCTGGTGCCTGCAATAAGCTACCACGTTCCCTCGCACAAGCCCTGATCCATTACTCGACCTCAGTTATCACACCACAACAAACGCTCAAAGAGATAGCGGTAAGCAGTAGAGTACTCGGCAAGAAGTCACCCTGCAATTTCTTGGTGTTTGGTCTAGGCCATGACAGCCTCATGTGGAGCTCTCTCAACTATGGAGGCCGGACTGTGTTTCTTGAAGAAGATGAAGCATGGATAAAACAGATCAAGAGACGGTTTCCGATGCTGGAATCGTACCATGTAACATATGACAGTAAAGTCAATCAAGCCGATAATCTCATAGAAGTCGGAAAAGGACCTGAATGCACAGCCATTGGAGATCCAAGGTACTCAATGTGTCAACTAGCACTCAAGGGTTTGCCTGCAGAAATTTATGAGACCGGTTGGGATCTAATCATGGTTGATGCACCGACTGGCTACTACGATGAGGCTCCTGGGAGAATGACAGCAATTTACACTGCGGGAATGATGGCAAGGAACAGGAAACAGGGAGGAGAGACTGATGTGTTTGTGCATGATGTTAACAGGGAAATAGAAGACAAGTTTTCTAAGGCTTTCTTGTGTGAAGGGTACATGAAGAAACAGGAAGGGAGACTAAGGCATTTTATTATCCCTAGCTATAGAGATGGATCAGAATCAGAATCAAATAGACCCTTTTGTCCATAG

Protein Analysis

282

Amino Acids

31.88

Weight (kDa)

8.59

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 79 - 263 4.9e-79 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013922)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09610
fragaria_vesca FvH4_5g28110
malus_domestica MD08G1244700.v1.1 MD15G1439800.v1.1
prunus_persica Prupe.1G582100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0271041
rosa_laevigata RLG00000002227
rosa_multiflora Rmu_co8384627.1_g000001
rosa_roxburghii Rroxscaffold_7G00197370
rosa_rugosa Rorug06G0058100 Rorug07G0193100
rosa_samantha Rh6AG177900 Rh6BG181200 Rh6CG177000 Rh6DG169200 Rh7BG325400
rosa_wichuraiana Rw6G015180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 440, 840
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 245, 644
AclWI GGATC 4 cut(s) 187, 497, 579, 820
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 4 cut(s) 261, 419, 512, 755
AflIII ACRYGT 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 563
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 1 cut(s) 616
AluBI AGCT 4 cut(s) 31, 166, 327, 801
AluI AGCT 4 cut(s) 31, 166, 327, 801
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 5 cut(s) 122, 388, 554, 674, 769
AlwI GGATC 4 cut(s) 187, 497, 579, 820
AoxI GGCC 3 cut(s) 5, 304, 343
ApoI RAATTY 1 cut(s) 552
AsiGI ACCGGT 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 267
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 329
BccI CCATC 2 cut(s) 646, 803
BciT130I CCWGG 1 cut(s) 618
BcoDI GTCTC 5 cut(s) 122, 388, 554, 674, 769
BfaI CTAG 3 cut(s) 302, 527, 798
BfmI CTRYAG 2 cut(s) 546, 802
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 618
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 154, 615
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 2 cut(s) 396, 577
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 76, 108
BpuEI CTTGAG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 817
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 506, 617
BsaWI WCCGGW 1 cut(s) 563
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 1 cut(s) 601
Bse8I GATNNNNATC 1 cut(s) 817
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 2 cut(s) 506, 617
BseJI GATNNNNATC 1 cut(s) 817
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 3 cut(s) 7, 306, 345
BshNI GGYRCC 1 cut(s) 152
BshTI ACCGGT 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 346, 564
BsmAI GTCTC 5 cut(s) 122, 388, 554, 674, 769
BsmBI CGTCTC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 3 cut(s) 7, 306, 345
Bso31I GGTCTC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
BspACI CCGC 2 cut(s) 245, 644
BspANI GGCC 3 cut(s) 7, 306, 345
BspCNI CTCAG 1 cut(s) 221
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 154, 615
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 4 cut(s) 187, 497, 579, 820
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 563
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 506, 617
BssMI GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
BssT1I CCWWGG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 352, 399, 437
BstC8I GCNNGC 2 cut(s) 157, 546
BstDEI CTNAG 3 cut(s) 208, 732, 779
BstFNI CGCG 1 cut(s) 142
BstKTI GATC 7 cut(s) 89, 137, 195, 390, 505, 574, 815
BstMAI GTCTC 5 cut(s) 122, 388, 554, 674, 769
BstMBI GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 618
BstSCI CCNGG 1 cut(s) 616
BstSFI CTRYAG 2 cut(s) 546, 802
BstUI CGCG 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 2 cut(s) 502, 571
BstYI RGATCY 2 cut(s) 502, 571
BsuRI GGCC 3 cut(s) 7, 306, 345
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 639
Cac8I GCNNGC 2 cut(s) 157, 546
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 260, 418, 511, 754
CspAI ACCGGT 1 cut(s) 563
CviAII CATG 7 cut(s) 308, 319, 375, 422, 580, 698, 757
CviQI GTAC 4 cut(s) 260, 418, 511, 754
DdeI CTNAG 3 cut(s) 208, 732, 779
DpnI GATC 7 cut(s) 88, 136, 194, 389, 504, 573, 814
DpnII GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
DrdI GACNNNNNNGTC 2 cut(s) 440, 840
DseDI GACNNNNNNGTC 2 cut(s) 440, 840
Ecl136II GAGCTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 506
Eco147I AGGCCT 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 506
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 506
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 7 cut(s) 311, 322, 378, 425, 583, 701, 760
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FatI CATG 7 cut(s) 307, 318, 374, 421, 579, 697, 756
FauI CCCGC 1 cut(s) 637
FauNDI CATATG 1 cut(s) 430
FriOI GRGCYC 1 cut(s) 329
FspBI CTAG 3 cut(s) 302, 527, 798
HaeIII GGCC 3 cut(s) 7, 306, 345
HapII CCGG 2 cut(s) 346, 564
Hin1II CATG 7 cut(s) 311, 322, 378, 425, 583, 701, 760
HincII GTYRAC 2 cut(s) 524, 706
HindII GTYRAC 2 cut(s) 524, 706
HinfI GANTC 4 cut(s) 118, 413, 818, 824
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 2 cut(s) 346, 564
HphI GGTGA 1 cut(s) 267
Hpy166II GTNNAC 2 cut(s) 524, 706
Hpy188I TCNGA 5 cut(s) 96, 405, 473, 817, 823
Hpy188III TCNNGA 3 cut(s) 82, 359, 391
Hpy8I GTNNAC 2 cut(s) 524, 706
HpyAV CCTTC 3 cut(s) 28, 743, 764
HpyCH4III ACNGT 3 cut(s) 352, 399, 437
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 6 cut(s) 159, 282, 489, 548, 590, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 3 cut(s) 208, 732, 779
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 7 cut(s) 311, 322, 378, 425, 583, 701, 760
KspAI GTTAAC 1 cut(s) 706
Kzo9I GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
LmnI GCTCC 2 cut(s) 324, 619
LweI GCATC 2 cut(s) 396, 577
MaeI CTAG 3 cut(s) 302, 527, 798
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 273, 424
MalI GATC 7 cut(s) 88, 136, 194, 389, 504, 573, 814
MboI GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
MboII GAAGA 7 cut(s) 44, 67, 93, 374, 377, 731, 772
MflI RGATCY 2 cut(s) 502, 571
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 4 cut(s) 66, 283, 552, 633
MluI ACGCGT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 6 cut(s) 188, 217, 326, 335, 604, 668
MseI TTAA 2 cut(s) 65, 705
MspI CCGG 2 cut(s) 346, 564
MspR9I CCNGG 1 cut(s) 618
Mva1269I GAATGC 1 cut(s) 491
MvaI CCWGG 1 cut(s) 618
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 312
NdeI CATATG 1 cut(s) 430
NdeII GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
NlaIII CATG 7 cut(s) 311, 322, 378, 425, 583, 701, 760
NlaIV GGNNCC 2 cut(s) 154, 615
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 273
PceI AGGCCT 1 cut(s) 7
PctI GAATGC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 413, 818, 824
PinAI ACCGGT 1 cut(s) 563
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 154, 615
PspPI GGNCC 1 cut(s) 479
PspPPI RGGWCCY 1 cut(s) 479
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 2 cut(s) 502, 571
RsaI GTAC 4 cut(s) 261, 419, 512, 755
RsaNI GTAC 4 cut(s) 260, 418, 511, 754
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 65, 705
Sau3AI GATC 7 cut(s) 86, 134, 192, 387, 502, 571, 812
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 261
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 618
SduI GDGCHC 1 cut(s) 329
SfaNI GCATC 2 cut(s) 396, 577
SfcI CTRYAG 2 cut(s) 546, 802
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 4 cut(s) 66, 283, 552, 633
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 2 cut(s) 245, 644
SspMI CTAG 3 cut(s) 302, 527, 798
SstI GAGCTC 1 cut(s) 329
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 1 cut(s) 616
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 3 cut(s) 352, 399, 437
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 203
TasI AATT 4 cut(s) 66, 283, 552, 633
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 3 cut(s) 413, 818, 824
Tru1I TTAA 2 cut(s) 65, 705
Tru9I TTAA 2 cut(s) 65, 705
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 3 cut(s) 67, 384, 773
TspRI CASTG 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 552
XspI CTAG 3 cut(s) 302, 527, 798
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.