Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013922

Physical Location & Seq

Genomic Coordinates Reverse (-)

30962196 .. 30963071

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1244700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGAACCAAAACCCATCCGACTCTCAATGTTAAGCTCCTCATCCTTGGAGTTTTCCTCGCCTTTGTTGTCATCTTCGTCCTCAGGTCAAGTTTTGATTCATCACCAGCTTCGTCCGATGAAAAACCCACCATTCCGGTGAAAGAAGCCGAAGACGATAACGAAAAATCAACAAGTTGCGACTCCACAATGACTTGCAACAAGATCCCGACCTCCCTGGCCAAAGCCCTAATCCACTACACAACCTCCACCATCACCCCACAACAAACCCTAAAAGAAATCTCAGTCACATCAAAGGTCTTGGACAAGAAATCTCCATGCAACTTCCTCGTCTTCGGCCTAGGCCACGACAGCCTCCTGTGGACTTCCCTCAACCACGGCGGACGCACCATTTTCCTCGAAGAAGACGAGTCGTGGATCGAGCAAATCCGGCGCCGTTTCCCCACATTGGAATCGTACCATGTCACATATGATAGCAAAGTGAACGAGGCTAACAATCTCCTGGGAGTTGGGAAGGGGCCTGAGTGCAGTGCAGTTGGTGATCCTAGGTACAGCATGTGCCAGCTGGCACTCAAGGGGCTACCCAGTGAAGTGTATGAGATCAAATGGGATTTGATCATGGTGGATGCACCCACAGGGTATCACGATGAAGCACCGGGGAGGATGAGTGCCATCTACACGGCTGGGATGATGGCCAGGAACAAAGTGGAGGGAGCGACTGATGTGTTTGTGCATGATGTGAATAGGGGTGTGGAAGATAAGTTCTCCAAGGCTTTCCTTTGCGAAGGGTACATGAAAAAACAAGTAGGGAGGTTGAGGCACTTTAACATTCCTAGTCACAGGGATGCTTCCGACAGGCCCTTTTGCCCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016740 GO:0016741 GO:0030775 GO:0032259 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

292

Amino Acids

32.51

Weight (kDa)

6.32

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	92 - 275	6.4e-79	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09610
fragaria_vesca	FvH4_5g28110
malus_domestica	MD08G1244700.v1.1 MD15G1439800.v1.1
prunus_persica	Prupe.1G582100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271041
rosa_laevigata	RLG00000002227
rosa_multiflora	Rmu_co8384627.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197370
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG177900 Rh6BG181200 Rh6CG177000 Rh6DG169200 Rh7BG325400
rosa_wichuraiana	Rw6G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	3 cut(s)	199, 425, 536
AcoI	YGGCCR	2 cut(s)	219, 693
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	3 cut(s)	458, 551, 791
AfiI	CCNNNNNNNGG	1 cut(s)	448
AjnI	CCWGG	3 cut(s)	216, 501, 695
AloI	GAACNNNNNNTCC	2 cut(s)	746, 778
AluBI	AGCT	3 cut(s)	37, 110, 565
AluI	AGCT	3 cut(s)	37, 110, 565
AlwI	GGATC	3 cut(s)	199, 425, 536
AoxI	GGCC	6 cut(s)	219, 337, 343, 518, 693, 857
AspA2I	CCTAGG	2 cut(s)	340, 545
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	518, 858
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	4 cut(s)	96, 151, 247, 551
AvrII	CCTAGG	2 cut(s)	340, 545
AxyI	CCTNAGG	1 cut(s)	83
BalI	TGGCCA	2 cut(s)	221, 695
BanI	GGYRCC	1 cut(s)	432
BbsI	GAAGAC	3 cut(s)	159, 325, 411
BccI	CCATC	4 cut(s)	24, 260, 680, 685
BceAI	ACGGC	3 cut(s)	394, 420, 696
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	3 cut(s)	218, 503, 697
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	657
BfaI	CTAG	3 cut(s)	341, 546, 834
BfoI	RGCGCY	1 cut(s)	436
BlnI	CCTAGG	2 cut(s)	340, 545
Bme1390I	CCNGG	4 cut(s)	218, 503, 657, 697
BmgT120I	GGNCC	2 cut(s)	518, 858
BmiI	GGNNCC	2 cut(s)	434, 519
BmrFI	CCNGG	4 cut(s)	218, 503, 657, 697
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	2 cut(s)	616, 835
BmuI	ACTGGG	1 cut(s)	579
BpiI	GAAGAC	3 cut(s)	159, 325, 411
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	433
BsaJI	CCNNGG	8 cut(s)	46, 216, 340, 376, 502, 545, 656, 768
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 652, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	585
Bse21I	CCTNAGG	1 cut(s)	83
BseBI	CCWGG	3 cut(s)	218, 503, 697
BseDI	CCNNGG	8 cut(s)	46, 216, 340, 376, 502, 545, 656, 768
BseGI	GGATG	6 cut(s)	16, 42, 631, 669, 693, 850
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	4 cut(s)	97, 297, 513, 861
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	2 cut(s)	547, 552
BshFI	GGCC	6 cut(s)	221, 339, 345, 520, 695, 859
BshNI	GGYRCC	1 cut(s)	432
BsiSI	CCGG	3 cut(s)	137, 430, 656
BslI	CCNNNNNNNGG	1 cut(s)	448
BsnI	GGCC	6 cut(s)	221, 339, 345, 520, 695, 859
Bsp143I	GATC	5 cut(s)	204, 417, 541, 600, 615
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	6 cut(s)	221, 339, 345, 520, 695, 859
BspCNI	CTCAG	4 cut(s)	96, 296, 514, 862
BspLI	GGNNCC	2 cut(s)	434, 519
BspPI	GGATC	3 cut(s)	199, 425, 536
BspT107I	GGYRCC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	8 cut(s)	46, 216, 340, 376, 502, 545, 656, 768
BssMI	GATC	5 cut(s)	204, 417, 541, 600, 615
BssNI	GRCGYC	1 cut(s)	433
BssT1I	CCWWGG	4 cut(s)	46, 340, 545, 768
Bst2UI	CCWGG	3 cut(s)	218, 503, 697
BstACI	GRCGYC	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	563, 567
BstDEI	CTNAG	4 cut(s)	83, 283, 522, 870
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	6 cut(s)	16, 42, 631, 669, 693, 850
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	5 cut(s)	207, 420, 544, 603, 618
BstMBI	GATC	5 cut(s)	204, 417, 541, 600, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 430
BstNI	CCWGG	3 cut(s)	218, 503, 697
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	4 cut(s)	216, 501, 655, 695
BstV2I	GAAGAC	3 cut(s)	159, 325, 411
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	83
BsuRI	GGCC	6 cut(s)	221, 339, 345, 520, 695, 859
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	6 cut(s)	16, 42, 631, 669, 693, 850
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	535, 592
Cac8I	GCNNGC	2 cut(s)	563, 567
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	518, 858
CseI	GACGC	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	457, 550, 790
CviAII	CATG	6 cut(s)	318, 461, 556, 619, 734, 793
CviQI	GTAC	3 cut(s)	457, 550, 790
DdeI	CTNAG	4 cut(s)	83, 283, 522, 870
DinI	GGCGCC	1 cut(s)	434
DpnI	GATC	5 cut(s)	206, 419, 543, 602, 617
DpnII	GATC	5 cut(s)	204, 417, 541, 600, 615
EaeI	YGGCCR	2 cut(s)	219, 693
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	4 cut(s)	46, 340, 545, 768
Eco81I	CCTNAGG	1 cut(s)	83
EcoO109I	RGGNCCY	2 cut(s)	518, 858
EcoRII	CCWGG	3 cut(s)	216, 501, 695
EcoT14I	CCWWGG	4 cut(s)	46, 340, 545, 768
EgeI	GGCGCC	1 cut(s)	434
EheI	GGCGCC	1 cut(s)	434
ErhI	CCWWGG	4 cut(s)	46, 340, 545, 768
FaeI	CATG	6 cut(s)	321, 464, 559, 622, 737, 796
FaiI	YATR	9 cut(s)	319, 462, 469, 471, 557, 597, 620, 735, 794
FatI	CATG	6 cut(s)	317, 460, 555, 618, 733, 792
FauNDI	CATATG	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	615
FokI	GGATG	6 cut(s)	3, 29, 638, 676, 700, 857
FspBI	CTAG	3 cut(s)	341, 546, 834
GlaI	GCGC	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	6 cut(s)	221, 339, 345, 520, 695, 859
HapII	CCGG	3 cut(s)	137, 430, 656
HgaI	GACGC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	6 cut(s)	321, 464, 559, 622, 737, 796
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	5 cut(s)	22, 98, 182, 410, 452
HpaII	CCGG	3 cut(s)	137, 430, 656
HphI	GGTGA	4 cut(s)	96, 151, 247, 551
Hpy166II	GTNNAC	2 cut(s)	363, 484
Hpy188I	TCNGA	3 cut(s)	21, 118, 853
Hpy188III	TCNNGA	2 cut(s)	208, 644
Hpy8I	GTNNAC	2 cut(s)	363, 484
HpyAV	CCTTC	2 cut(s)	508, 779
HpyCH4V	TGCA	6 cut(s)	198, 321, 528, 533, 629, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 430
HpyF3I	CTNAG	4 cut(s)	83, 283, 522, 870
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	6 cut(s)	321, 464, 559, 622, 737, 796
HspAI	GCGC	1 cut(s)	433
KasI	GGCGCC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	5 cut(s)	204, 417, 541, 600, 615
LmnI	GCTCC	2 cut(s)	42, 713
LweI	GCATC	2 cut(s)	616, 835
MaeI	CTAG	3 cut(s)	341, 546, 834
MaeIII	GTNAC	3 cut(s)	286, 463, 836
MalI	GATC	5 cut(s)	206, 419, 543, 602, 617
MboI	GATC	5 cut(s)	204, 417, 541, 600, 615
MboII	GAAGA	6 cut(s)	67, 164, 325, 413, 416, 767
MflI	RGATCY	1 cut(s)	204
MlsI	TGGCCA	2 cut(s)	221, 695
MluNI	TGGCCA	2 cut(s)	221, 695
Mly113I	GGCGCC	1 cut(s)	433
MlyI	GAGTC	3 cut(s)	16, 176, 419
MmeI	TCCRAC	2 cut(s)	44, 876
Mox20I	TGGCCA	2 cut(s)	221, 695
MscI	TGGCCA	2 cut(s)	221, 695
MseI	TTAA	2 cut(s)	33, 825
MslI	CAYNNNNRTG	2 cut(s)	137, 843
Msp20I	TGGCCA	2 cut(s)	221, 695
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	3 cut(s)	137, 430, 656
MspR9I	CCNGG	4 cut(s)	218, 503, 657, 697
MvaI	CCWGG	3 cut(s)	218, 503, 697
MwoI	GCNNNNNNNGC	2 cut(s)	351, 430
NarI	GGCGCC	1 cut(s)	433
NciI	CCSGG	1 cut(s)	657
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	5 cut(s)	204, 417, 541, 600, 615
NlaIII	CATG	6 cut(s)	321, 464, 559, 622, 737, 796
NlaIV	GGNNCC	2 cut(s)	434, 519
NmuCI	GTSAC	3 cut(s)	286, 463, 836
NspI	RCATGY	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	98, 452
PleI	GAGTC	3 cut(s)	16, 176, 418
PluTI	GGCGCC	1 cut(s)	436
PpsI	GAGTC	3 cut(s)	16, 176, 418
Psp6I	CCWGG	3 cut(s)	216, 501, 695
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	3 cut(s)	216, 501, 695
PspN4I	GGNNCC	2 cut(s)	434, 519
PspPI	GGNCC	2 cut(s)	518, 858
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	3 cut(s)	458, 551, 791
RsaNI	GTAC	3 cut(s)	457, 550, 790
RseI	CAYNNNNRTG	2 cut(s)	137, 843
SaqAI	TTAA	2 cut(s)	33, 825
Sau3AI	GATC	5 cut(s)	204, 417, 541, 600, 615
Sau96I	GGNCC	2 cut(s)	518, 858
SchI	GAGTC	3 cut(s)	16, 176, 419
ScrFI	CCNGG	4 cut(s)	218, 503, 657, 697
SetI	ASST	9 cut(s)	39, 89, 112, 215, 248, 300, 551, 567, 815
SfaNI	GCATC	2 cut(s)	616, 835
SfoI	GGCGCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	2 cut(s)	137, 843
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SsiI	CCGC	1 cut(s)	381
SspDI	GGCGCC	1 cut(s)	432
SspMI	CTAG	3 cut(s)	341, 546, 834
StyD4I	CCNGG	4 cut(s)	216, 501, 655, 695
StyI	CCWWGG	4 cut(s)	46, 340, 545, 768
TaqI	TCGA	2 cut(s)	399, 420
TfiI	GAWTC	2 cut(s)	98, 452
Tru1I	TTAA	2 cut(s)	33, 825
Tru9I	TTAA	2 cut(s)	33, 825
TscAI	CASTG	2 cut(s)	535, 592
TseFI	GTSAC	3 cut(s)	286, 463, 836
Tsp45I	GTSAC	3 cut(s)	286, 463, 836
TspDTI	ATGAA	4 cut(s)	90, 135, 663, 809
TspRI	CASTG	2 cut(s)	535, 592
XceI	RCATGY	1 cut(s)	559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XmaJI	CCTAGG	2 cut(s)	340, 545
XspI	CTAG	3 cut(s)	341, 546, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.