Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013922

Physical Location & Seq

Genomic Coordinates Reverse (-)

53977147 .. 53978022

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1439800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGAACCAAAACCTATCCAACTTTCAATGTTAAGCTTCTCCTCCTTGGAATTTTCCTTGCTTTGGTTGTCATCTTTGTCTTCAGGACAAGTTCTGATTCATCACCAGCTTCCTCCAATGAAAAATCCCCCATTTCGGGGAAACAAGCCAAAGATGATCACGAAAAATCAACAAATTGTGACTCCACAGGGACTTGCAACAAGATTCCAACCTCCCTAGCCAAAGCCCTAATCCACTACACAACCTCCACCATCACCCCACAACAAACCCTAAAAGAAATCTCAGTCACATCCAAGGTCTTGGACAAGAAATCGCCCTGCAACTTCCTCGTCTTCGGCCTAGGCCACGACAGCCTCATGTGGACTTCCCTCAACCACGGCGGACGCACCATTTTCCTCGAAGAAGACGAGTCATGGATAGAGCAAATCCGGCGCCGCTTCCCCACTTTGGAATCGTACCATGTCACATACGATAGCAAAGTGAACGAGGCTAACAGTCTCATGGATGTTGGGAAGGGGCCTGAGTGCACTGCAGTTGGTGATCCTAGGTATAGCGTATGCCAGCTGGCACTCAAGGGGTTGCCCAGTGAAGTGTATGAGATAAAATGGGATTTGATCATGGTGGATGCACCCACAGGGTATCATGATGAAGCACCAGGGAGGATGAGTGCCATTTATACGGCTGGGATGATGGCCAGGAACAAAGAGGGGGGAGAGACTGATGTGTTTGTGCATGATGTGAATAGGGATGTGGAAGATAAGTTCTCCAAGGCTTTTCTTTGTGAAGGGTACATGAAAAAACAAGAAGGGAGGTTGAGGCACTTCAATATTCCTAGTCACAAGGATAGTTCCAACAGGCCCTTTTGCCCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016740 GO:0016741 GO:0030775 GO:0032259 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

292

Amino Acids

32.59

Weight (kDa)

6.51

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	92 - 275	6.5e-80	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09610
fragaria_vesca	FvH4_5g28110
malus_domestica	MD08G1244700.v1.1 MD15G1439800.v1.1
prunus_persica	Prupe.1G582100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271041
rosa_laevigata	RLG00000002227
rosa_multiflora	Rmu_co8384627.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197370
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG177900 Rh6BG181200 Rh6CG177000 Rh6DG169200 Rh7BG325400
rosa_wichuraiana	Rw6G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AciI	CCGC	2 cut(s)	381, 436
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	2 cut(s)	458, 791
AfiI	CCNNNNNNNGG	5 cut(s)	64, 136, 137, 138, 448
AgsI	TTSAA	2 cut(s)	28, 826
AjnI	CCWGG	2 cut(s)	655, 695
AloI	GAACNNNNNNTCC	2 cut(s)	746, 778
AluBI	AGCT	3 cut(s)	37, 110, 565
AluI	AGCT	3 cut(s)	37, 110, 565
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	2 cut(s)	503, 710
Alw44I	GTGCAC	1 cut(s)	526
AlwI	GGATC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	869
AoxI	GGCC	5 cut(s)	337, 343, 518, 693, 857
ApaLI	GTGCAC	1 cut(s)	526
ApoI	RAATTY	1 cut(s)	51
AspA2I	CCTAGG	2 cut(s)	340, 545
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	518, 858
AsuHPI	GGTGA	3 cut(s)	96, 247, 551
AvaI	CYCGRG	1 cut(s)	869
AvrII	CCTAGG	2 cut(s)	340, 545
BaeGI	GKGCMC	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	432
BbsI	GAAGAC	3 cut(s)	73, 325, 411
Bbv12I	GWGCWC	1 cut(s)	530
BccI	CCATC	2 cut(s)	260, 685
BceAI	ACGGC	2 cut(s)	394, 696
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	2 cut(s)	657, 697
BclI	TGATCA	2 cut(s)	157, 615
BcoDI	GTCTC	2 cut(s)	503, 710
BfaI	CTAG	4 cut(s)	218, 341, 546, 834
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	436
BisI	GCNGC	1 cut(s)	436
BlnI	CCTAGG	2 cut(s)	340, 545
BlsI	GCNGC	1 cut(s)	437
Bme1390I	CCNGG	2 cut(s)	657, 697
BmeT110I	CYCGRG	1 cut(s)	869
BmgT120I	GGNCC	2 cut(s)	518, 858
BmiI	GGNNCC	2 cut(s)	434, 519
BmrFI	CCNGG	2 cut(s)	657, 697
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	1 cut(s)	579
BpiI	GAAGAC	3 cut(s)	73, 325, 411
BpuEI	CTTGAG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	433
BsaJI	CCNNGG	7 cut(s)	46, 294, 340, 376, 545, 656, 768
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 652, 682
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 136, 137, 138, 448
Bse1I	ACTGG	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	657, 697
BseDI	CCNNGG	7 cut(s)	46, 294, 340, 376, 545, 656, 768
BseGI	GGATG	6 cut(s)	290, 511, 631, 669, 693, 754
BseLI	CCNNNNNNNGG	5 cut(s)	64, 136, 137, 138, 448
BseMII	CTCAG	2 cut(s)	297, 513
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	530
BseYI	CCCAGC	1 cut(s)	683
BshFI	GGCC	5 cut(s)	339, 345, 520, 695, 859
BshNI	GGYRCC	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	530
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	5 cut(s)	64, 136, 137, 138, 448
BsmAI	GTCTC	2 cut(s)	503, 710
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	5 cut(s)	339, 345, 520, 695, 859
BsoBI	CYCGRG	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	3 cut(s)	157, 541, 615
BspACI	CCGC	2 cut(s)	381, 436
BspANI	GGCC	5 cut(s)	339, 345, 520, 695, 859
BspCNI	CTCAG	2 cut(s)	296, 514
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	434, 519
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	7 cut(s)	46, 294, 340, 376, 545, 656, 768
BssMI	GATC	3 cut(s)	157, 541, 615
BssNI	GRCGYC	1 cut(s)	433
BssT1I	CCWWGG	5 cut(s)	46, 294, 340, 545, 768
Bst2UI	CCWGG	2 cut(s)	657, 697
Bst4CI	ACNGT	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	563, 567
BstDEI	CTNAG	2 cut(s)	283, 522
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	6 cut(s)	290, 511, 631, 669, 693, 754
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	160, 544, 618
BstMAI	GTCTC	2 cut(s)	503, 710
BstMBI	GATC	3 cut(s)	157, 541, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 430
BstNI	CCWGG	2 cut(s)	657, 697
BstSCI	CCNGG	2 cut(s)	655, 695
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	530
BstV2I	GAAGAC	3 cut(s)	73, 325, 411
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuRI	GGCC	5 cut(s)	339, 345, 520, 695, 859
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	6 cut(s)	290, 511, 631, 669, 693, 754
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	528, 592
Cac8I	GCNNGC	2 cut(s)	563, 567
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	518, 858
CseI	GACGC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	457, 790
CviAII	CATG	8 cut(s)	358, 414, 461, 502, 619, 644, 734, 793
CviQI	GTAC	2 cut(s)	457, 790
DdeI	CTNAG	2 cut(s)	283, 522
DinI	GGCGCC	1 cut(s)	434
DpnI	GATC	3 cut(s)	159, 543, 617
DpnII	GATC	3 cut(s)	157, 541, 615
EaeI	YGGCCR	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	5 cut(s)	46, 294, 340, 545, 768
Eco57I	CTGAAG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	869
EcoO109I	RGGNCCY	2 cut(s)	518, 858
EcoRII	CCWGG	2 cut(s)	655, 695
EcoT14I	CCWWGG	5 cut(s)	46, 294, 340, 545, 768
EgeI	GGCGCC	1 cut(s)	434
EheI	GGCGCC	1 cut(s)	434
ErhI	CCWWGG	5 cut(s)	46, 294, 340, 545, 768
FaeI	CATG	8 cut(s)	361, 417, 464, 505, 622, 647, 737, 796
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	8 cut(s)	357, 413, 460, 501, 618, 643, 733, 792
FbaI	TGATCA	2 cut(s)	157, 615
Fnu4HI	GCNGC	1 cut(s)	436
FokI	GGATG	6 cut(s)	277, 518, 638, 676, 700, 761
Fsp4HI	GCNGC	1 cut(s)	436
FspBI	CTAG	4 cut(s)	218, 341, 546, 834
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	436
GsaI	CCCAGC	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	5 cut(s)	339, 345, 520, 695, 859
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	8 cut(s)	361, 417, 464, 505, 622, 647, 737, 796
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	5 cut(s)	98, 182, 205, 410, 452
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	3 cut(s)	96, 247, 551
Hpy166II	GTNNAC	3 cut(s)	363, 484, 528
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	85, 161, 644
Hpy8I	GTNNAC	3 cut(s)	363, 484, 528
HpyAV	CCTTC	3 cut(s)	508, 779, 800
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	6 cut(s)	198, 321, 528, 533, 629, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 430
HpyF3I	CTNAG	2 cut(s)	283, 522
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	8 cut(s)	361, 417, 464, 505, 622, 647, 737, 796
HspAI	GCGC	1 cut(s)	433
KasI	GGCGCC	1 cut(s)	432
Ksp22I	TGATCA	2 cut(s)	157, 615
Kzo9I	GATC	3 cut(s)	157, 541, 615
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	4 cut(s)	218, 341, 546, 834
MaeIII	GTNAC	4 cut(s)	179, 286, 463, 836
MalI	GATC	3 cut(s)	159, 543, 617
MboI	GATC	3 cut(s)	157, 541, 615
MboII	GAAGA	5 cut(s)	73, 325, 413, 416, 767
MhlI	GDGCHC	1 cut(s)	530
MlsI	TGGCCA	1 cut(s)	695
MluCI	AATT	2 cut(s)	51, 175
MluNI	TGGCCA	1 cut(s)	695
Mly113I	GGCGCC	1 cut(s)	433
MlyI	GAGTC	2 cut(s)	176, 419
MmeI	TCCRAC	3 cut(s)	44, 233, 876
Mox20I	TGGCCA	1 cut(s)	695
MscI	TGGCCA	1 cut(s)	695
MseI	TTAA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	657, 697
MvaI	CCWGG	2 cut(s)	657, 697
MwoI	GCNNNNNNNGC	2 cut(s)	351, 430
NarI	GGCGCC	1 cut(s)	433
NdeII	GATC	3 cut(s)	157, 541, 615
NlaIII	CATG	8 cut(s)	361, 417, 464, 505, 622, 647, 737, 796
NlaIV	GGNNCC	2 cut(s)	434, 519
NmuCI	GTSAC	4 cut(s)	179, 286, 463, 836
PagI	TCATGA	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	98, 205, 452
PkrI	GCNGC	1 cut(s)	437
PleI	GAGTC	2 cut(s)	176, 418
PluTI	GGCGCC	1 cut(s)	436
PpsI	GAGTC	2 cut(s)	176, 418
Psp6I	CCWGG	2 cut(s)	655, 695
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	655, 695
PspN4I	GGNNCC	2 cut(s)	434, 519
PspPI	GGNCC	2 cut(s)	518, 858
PstI	CTGCAG	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	2 cut(s)	458, 791
RsaNI	GTAC	2 cut(s)	457, 790
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	3 cut(s)	157, 541, 615
Sau96I	GGNCC	2 cut(s)	518, 858
SchI	GAGTC	2 cut(s)	176, 419
ScrFI	CCNGG	2 cut(s)	657, 697
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	9 cut(s)	17, 39, 112, 215, 248, 300, 551, 567, 815
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	2 cut(s)	51, 175
SsiI	CCGC	2 cut(s)	381, 436
SspDI	GGCGCC	1 cut(s)	432
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	4 cut(s)	218, 341, 546, 834
StyD4I	CCNGG	2 cut(s)	655, 695
StyI	CCWWGG	5 cut(s)	46, 294, 340, 545, 768
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	51, 175
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	3 cut(s)	98, 205, 452
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	535, 592
TseFI	GTSAC	4 cut(s)	179, 286, 463, 836
Tsp45I	GTSAC	4 cut(s)	179, 286, 463, 836
TspDTI	ATGAA	4 cut(s)	90, 135, 663, 809
TspRI	CASTG	2 cut(s)	535, 592
VneI	GTGCAC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	51
XmaJI	CCTAGG	2 cut(s)	340, 545
XspI	CTAG	4 cut(s)	218, 341, 546, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.