Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013922

Physical Location & Seq

Genomic Coordinates Forward (+)

41533313 .. 41535074

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTCGTTCATGAACGGCCTATTAGAGGTTTGGAAGCCACAAGACGTGGAGGCCGGATGAATTGGAGAGGCTTCAAAGGGAAGGCAGATGAACTTCAACCTCGATCATCTTATTCTCTCCCCTATAATTCAAGCACGCAAGACCATATCGAAAGCATGAGTCGATCACCAAAAACCTATCCAAGTTTCAACTATAAGCTTCTTCTCCTCGGAGTTTTCCTGGCTTTCGTTGTCCTCTTTGTCTTGAGATCAAGCTTCTCATCATCTGATTCCAATCAAAATCCATCTACCATCTCACCAAAGGTACCTTTCCTCAATCCTTCGGCTAAAGATTTAAGTAGCACTTCTACAGACTGCTCACCAACCTTATGTGGAGTGCACTCAACCATGGGGGGTAGGACAATTTTCCTAGAAGAAGACGAGTCCTGGATCGAGCAAATCCGACACCGCTTCCCCACATTGGAATCATACCATGTCACATATAACAGCAAGGTGAATGAGGCTGATAATCTCATGGATGTTGGGAAGGGGCCTGAGTGCACTGCAGTTGGTAGTGATATTAAGTACAGCATGTGCCAATTGGCTTTGAAGGGTCTACCGAGTGAAGTTTATGACATCAAATGGGATTTGATAATGGTGGATGCACCCACCGGGTATCATGATGAAGCACCGGGAAGAATGAGTGCCATATACACAGCTGGAATGATAGCCCGAAATAAAGAGGAAGGGGAGACTACTCATGTGTTTGTTCATGATGTGAACAGAGTTGTGGAAGACAAGTTCTCTATGTCATTCCTCTGTAAAGGTTACATGCAAAAACAGGAAGGGAGGTTGAGGCACTTCACTATTCCTAGTCACAGGGATGGTTCTAGTAGGCCATTTTGCCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016740 GO:0016741 GO:0030775 GO:0032259 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

297

Amino Acids

33.44

Weight (kDa)

6.8

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	130 - 281	1.6e-60	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09610
fragaria_vesca	FvH4_5g28110
malus_domestica	MD08G1244700.v1.1 MD15G1439800.v1.1
prunus_persica	Prupe.1G582100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271041
rosa_laevigata	RLG00000002227
rosa_multiflora	Rmu_co8384627.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197370
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG177900 Rh6BG181200 Rh6CG177000 Rh6DG169200 Rh7BG325400
rosa_wichuraiana	Rw6G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	595
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	1 cut(s)	437
AfaI	GTAC	2 cut(s)	306, 566
AfiI	CCNNNNNNNGG	2 cut(s)	26, 460
AgsI	TTSAA	5 cut(s)	76, 98, 132, 190, 589
AjiI	CACGTC	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	219, 425
AloI	GAACNNNNNNTCC	2 cut(s)	764, 796
AluBI	AGCT	3 cut(s)	199, 255, 698
AluI	AGCT	3 cut(s)	199, 255, 698
Alw21I	GWGCWC	2 cut(s)	381, 542
Alw26I	GTCTC	1 cut(s)	725
Alw44I	GTGCAC	2 cut(s)	377, 538
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	4 cut(s)	17, 52, 530, 875
ApaLI	GTGCAC	2 cut(s)	377, 538
Asp718I	GGTACC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	2 cut(s)	652, 672
AsuHPI	GGTGA	4 cut(s)	159, 288, 351, 505
BaeGI	GKGCMC	2 cut(s)	381, 542
BanI	GGYRCC	1 cut(s)	304
BbsI	GAAGAC	2 cut(s)	423, 780
Bbv12I	GWGCWC	2 cut(s)	381, 542
BccI	CCATC	3 cut(s)	292, 299, 857
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	221, 427
BcnI	CCSGG	2 cut(s)	652, 672
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	3 cut(s)	410, 852, 870
BfmI	CTRYAG	2 cut(s)	348, 543
Bme1390I	CCNGG	4 cut(s)	221, 427, 652, 672
BmgBI	CACGTC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	306, 531
BmrFI	CCNGG	4 cut(s)	221, 427, 652, 672
BmsI	GCATC	1 cut(s)	631
BpiI	GAAGAC	2 cut(s)	423, 780
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	2 cut(s)	652, 672
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	208, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 460
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	221, 427
BseDI	CCNNGG	2 cut(s)	208, 387
BseGI	GGATG	4 cut(s)	63, 523, 646, 868
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	26, 460
BseMII	CTCAG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	2 cut(s)	381, 542
BshFI	GGCC	4 cut(s)	19, 54, 532, 877
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	381, 542
BsiSI	CCGG	3 cut(s)	55, 651, 671
BslI	CCNNNNNNNGG	2 cut(s)	26, 460
BsmAI	GTCTC	1 cut(s)	725
BsnI	GGCC	4 cut(s)	19, 54, 532, 877
Bsp1286I	GDGCHC	2 cut(s)	381, 542
Bsp143I	GATC	4 cut(s)	104, 164, 248, 429
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	4 cut(s)	19, 54, 532, 877
BspCNI	CTCAG	1 cut(s)	526
BspHI	TCATGA	3 cut(s)	10, 658, 751
BspLI	GGNNCC	2 cut(s)	306, 531
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	208, 387
BssMI	GATC	4 cut(s)	104, 164, 248, 429
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	221, 427
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	387
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	63, 523, 646, 868
BstKTI	GATC	4 cut(s)	107, 167, 251, 432
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	4 cut(s)	104, 164, 248, 429
BstNI	CCWGG	2 cut(s)	221, 427
BstNSI	RCATGY	2 cut(s)	574, 814
BstSCI	CCNGG	4 cut(s)	219, 425, 650, 670
BstSFI	CTRYAG	2 cut(s)	348, 543
BstSLI	GKGCMC	2 cut(s)	381, 542
BstV2I	GAAGAC	2 cut(s)	423, 780
BsuRI	GGCC	4 cut(s)	19, 54, 532, 877
BtgI	CCRYGG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	63, 523, 646, 868
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	137
CciI	TCATGA	3 cut(s)	10, 658, 751
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	305, 565
CviQI	GTAC	2 cut(s)	305, 565
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	4 cut(s)	106, 166, 250, 431
DpnII	GATC	4 cut(s)	104, 164, 248, 429
Eco130I	CCWWGG	1 cut(s)	387
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	219, 425
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FblI	GTMKAC	1 cut(s)	595
FokI	GGATG	4 cut(s)	70, 530, 653, 875
FspBI	CTAG	3 cut(s)	410, 852, 870
HaeIII	GGCC	4 cut(s)	19, 54, 532, 877
HapII	CCGG	3 cut(s)	55, 651, 671
HindIII	AAGCTT	2 cut(s)	197, 253
HinfI	GANTC	4 cut(s)	160, 269, 422, 464
HpaII	CCGG	3 cut(s)	55, 651, 671
HphI	GGTGA	4 cut(s)	159, 288, 351, 505
Hpy166II	GTNNAC	4 cut(s)	379, 540, 596, 760
Hpy188I	TCNGA	3 cut(s)	212, 268, 443
Hpy188III	TCNNGA	4 cut(s)	11, 244, 659, 752
Hpy8I	GTNNAC	4 cut(s)	379, 540, 596, 760
HpyAV	CCTTC	6 cut(s)	76, 330, 520, 583, 719, 818
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	5 cut(s)	379, 540, 545, 644, 814
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	308
Kzo9I	GATC	4 cut(s)	104, 164, 248, 429
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	3 cut(s)	410, 852, 870
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	475, 806, 854
MalI	GATC	4 cut(s)	106, 166, 250, 431
MboI	GATC	4 cut(s)	104, 164, 248, 429
MboII	GAAGA	5 cut(s)	194, 425, 428, 687, 785
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	381, 542
MluCI	AATT	4 cut(s)	61, 127, 402, 578
MlyI	GAGTC	2 cut(s)	169, 431
MmeI	TCCRAC	1 cut(s)	466
MseI	TTAA	2 cut(s)	335, 561
MslI	CAYNNNNRTG	1 cut(s)	861
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	3 cut(s)	55, 651, 671
MspR9I	CCNGG	4 cut(s)	221, 427, 652, 672
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	2 cut(s)	221, 427
NciI	CCSGG	2 cut(s)	652, 672
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	104, 164, 248, 429
NlaIV	GGNNCC	2 cut(s)	306, 531
NmuCI	GTSAC	2 cut(s)	475, 854
NspI	RCATGY	2 cut(s)	574, 814
PagI	TCATGA	3 cut(s)	10, 658, 751
PfeI	GAWTC	2 cut(s)	269, 464
PfoI	TCCNGGA	1 cut(s)	425
PleI	GAGTC	2 cut(s)	168, 430
PpsI	GAGTC	2 cut(s)	168, 430
Psp6I	CCWGG	2 cut(s)	219, 425
PspGI	CCWGG	2 cut(s)	219, 425
PspN4I	GGNNCC	2 cut(s)	306, 531
PspPI	GGNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	2 cut(s)	306, 566
RsaNI	GTAC	2 cut(s)	305, 565
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	335, 561
Sau3AI	GATC	4 cut(s)	104, 164, 248, 429
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	2 cut(s)	169, 431
ScrFI	CCNGG	4 cut(s)	221, 427, 652, 672
SduI	GDGCHC	2 cut(s)	381, 542
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	2 cut(s)	348, 543
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	61, 127, 402, 578
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	3 cut(s)	410, 852, 870
StyD4I	CCNGG	4 cut(s)	219, 425, 650, 670
StyI	CCWWGG	1 cut(s)	387
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	4 cut(s)	103, 150, 163, 432
TasI	AATT	4 cut(s)	61, 127, 402, 578
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	269, 464
Tru1I	TTAA	2 cut(s)	335, 561
Tru9I	TTAA	2 cut(s)	335, 561
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	475, 854
Tsp45I	GTSAC	2 cut(s)	475, 854
TspDTI	ATGAA	5 cut(s)	27, 74, 105, 678, 740
TspRI	CASTG	1 cut(s)	547
VneI	GTGCAC	2 cut(s)	377, 538
XagI	CCTNNNNNAGG	1 cut(s)	24
XceI	RCATGY	2 cut(s)	574, 814
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	3 cut(s)	410, 852, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.