Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005165

Physical Location & Seq

Genomic Coordinates Forward (+)

7849633 .. 7856316

Gene Structure 6684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0058100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGTTGCGGCAAAGGAAGAATATGCTGCAGAAAAGGAAGAATACAGTGATGATTGAGAGAAAGGAAAAGCAAAATGTTGGTAGTGAGTGTAGCCCTTGGCAGACACCACCAGAAGATATCATGGAGATGATTCTACAGTTTGTCGACTTTGCTGATCAAAGGAGGTTAGGTCAGGTCAGCAAGTCTTGGAGGTCAATTATTTTCCAAACATTCATGCGTAGTGCTCGTCGTCAACTCCCATGGTTAATACTCCCTGAAGTCCAAAATTGCAGGACCAACAAGTACTTGAGCTTTCTCACCTTCCCTGAGAACAAACTTTCCACGGGCAAAGCTGTCAAGTTAAAGCTGCCTAAGCAACTTAAAGGCGGGTGGATATACGGATCTTCTAAAGGTTGGTTGATCATCATCAAGGAAAAAGGACTGAACTCTGAGATGTATCTAGTAAACCCAATTTCAAGAGCCGTACACAAACTTCCGCCCTTGAGAACAATTCCATCCTTCAAAAACTTTTTAAAAACCAGGAAATGGGAACTTTTGGGTGCCAATGGATTCTGTCTACGAGTTAAAATGTCTACCTCGGATGGTTTTAATTCTTCAAGCAACTTTACTGTAGCTGCATATTTCGAGGATCAGAAGACTTCAGGTTTGTGCAGACCAGGAGACGAAAAATGGAGTGTCTTCCTGGTATTAGATGGTAATCAAGATGACTGCCTCTGTGATATATTGTTTTCTTCTGGAAGGTTATATGCTTTAGTTGGGAGTAAAAAAATTGACGGCAGCGTCGCACCTACTCGCGCCTTAAACTTCGCATTTCAGGATGCTGAACACTTAAAGTTGACGTTGGTCTATGACAAGCATGAAGACTATAATGACATTCCTCCATATCTTACAGATTACACGCCATGGTTGTTAGAATCAACCAACAAGGAAGTTTTGTTAATCCATCAAATGCATGGTGATGTTTTGAAGACAAAAAATGATGGTGATGAACAAATCAACGAGATTAATGATGGCGATCACGGCCTAAATAATGAGGGTGATGAGGAAGACATTGGTAGTGTTGAAGGGAATAATGATGATGAAGGTGGTGGCGGTGGCCGTGACGGTGATGATGATGAAGTAGTCAATAAGAATATTAGAAATGTATGTCATTGCAGTTTTAGAACATACAATATAGATCAATATAACAACAATTTTTATATGATACAATCCTTGGGTGACCAATCATTATTTCTTGGAAACGATGGTGCTTTCTCCCTTCCTGCTAGTAACATCAAGGAACTAGAAAATAATTGTATCTACTTTGCAATGAATATGTGCCATGAAGTGGAATTAGAATGGCTTCCAAAGACATATATATCTGATGACTTTGGCATATTCTACTTCGATGGTCAAAGAACTGAGAGGCCATTTCAAGGTATGGAAATATCAGTGAAGTATCAACCGAGTTGGTTCACTCCAACTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016740 GO:0016741 GO:0030775 GO:0032259 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

489

Amino Acids

56.06

Weight (kDa)

5.56

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	37 - 67	3.1e-07	F-box domain
F-box-like	PF12937	37 - 70	8.5e-06	F-box-like
Beta-prop_KIB1-4	PF03478	106 - 453	2.2e-32	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26750
fragaria_vesca	FvH4_1g30250 FvH4_1g30250 FvH4_1g30250 FvH4_1g30250
malus_domestica	MD01G1063000.v1.1 MD07G1136300.v1.1
prunus_persica	Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1
pyrus_communis	pycom01g09340 pycom07g13360
rosa_chinensis	RchiOBHm_Chr6g0271051 RchiOBHm_Chr7g0220351
rosa_laevigata	RLG00000002228
rosa_multiflora	Rmu_sc0001136.1_g000086 Rmu_sc0001565.1_g000063
rosa_roxburghii	Rroxscaffold_3G00239510
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG178100 Rh6BG181300 Rh6CG177100 Rh6DG169300 Rh7AG334400 Rh7BG325300 Rh7CG352100 Rh7DG331100
rosa_wichuraiana	Rw0G009890 Rw7G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	539
AccB7I	CCANNNNNTGG	2 cut(s)	525, 1327
AccI	GTMKAC	3 cut(s)	144, 556, 572
AccII	CGCG	1 cut(s)	795
AciI	CCGC	4 cut(s)	7, 366, 476, 1092
AclWI	GGATC	2 cut(s)	388, 636
AcoI	YGGCCR	1 cut(s)	1096
AcuI	CTGAAG	2 cut(s)	276, 624
AfaI	GTAC	2 cut(s)	284, 465
AfiI	CCNNNNNNNGG	3 cut(s)	525, 1327, 1415
AgsI	TTSAA	6 cut(s)	456, 502, 597, 967, 1064, 1415
AjnI	CCWGG	3 cut(s)	518, 655, 681
AjuI	GAANNNNNNNTTGG	2 cut(s)	1215, 1247
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	291, 332, 346, 614
AluI	AGCT	4 cut(s)	291, 332, 346, 614
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	654
AlwI	GGATC	2 cut(s)	388, 636
AoxI	GGCC	3 cut(s)	1021, 1096, 1406
ApeKI	GCWGC	4 cut(s)	25, 346, 614, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AseI	ATTAAT	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	1341
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	6 cut(s)	289, 968, 995, 1049, 1118, 1229
AvaII	GGWCC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	456, 488
BbsI	GAAGAC	5 cut(s)	641, 670, 867, 974, 1053
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	4 cut(s)	12, 333, 601, 789
BccI	CCATC	8 cut(s)	502, 575, 686, 951, 974, 1004, 1238, 1382
BceAI	ACGGC	4 cut(s)	446, 790, 1036, 1083
BciT130I	CCWGG	3 cut(s)	520, 657, 683
BclI	TGATCA	2 cut(s)	154, 399
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	3 cut(s)	440, 1266, 1283
BfmI	CTRYAG	4 cut(s)	26, 134, 609, 1466
BisI	GCNGC	5 cut(s)	8, 26, 347, 615, 778
BlsI	GCNGC	5 cut(s)	9, 27, 348, 616, 779
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	3 cut(s)	520, 657, 683
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	3 cut(s)	520, 657, 683
BmsI	GCATC	1 cut(s)	808
BoxI	GACNNNNGTC	1 cut(s)	842
BpiI	GAAGAC	5 cut(s)	641, 670, 867, 974, 1053
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	307, 502
BsaBI	GATNNNNATC	3 cut(s)	404, 696, 1014
BsaJI	CCNNGG	6 cut(s)	95, 239, 321, 576, 902, 1212
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	3 cut(s)	525, 1327, 1415
Bse3DI	GCAATG	2 cut(s)	1150, 1314
Bse8I	GATNNNNATC	3 cut(s)	404, 696, 1014
BseBI	CCWGG	3 cut(s)	520, 657, 683
BseDI	CCNNGG	6 cut(s)	95, 239, 321, 576, 902, 1212
BseGI	GGATG	3 cut(s)	494, 586, 823
BseJI	GATNNNNATC	3 cut(s)	404, 696, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	525, 1327, 1415
BseMI	GCAATG	2 cut(s)	1150, 1314
BseMII	CTCAG	3 cut(s)	297, 420, 1392
BseXI	GCAGC	4 cut(s)	12, 333, 601, 789
BsgI	GTGCAG	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	795
BshFI	GGCC	3 cut(s)	1023, 1098, 1408
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	525, 1327, 1415
BsmAI	GTCTC	1 cut(s)	654
BsmBI	CGTCTC	1 cut(s)	654
BsnI	GGCC	3 cut(s)	1023, 1098, 1408
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
Bsp19I	CCATGG	2 cut(s)	239, 902
BspACI	CCGC	4 cut(s)	7, 366, 476, 1092
BspANI	GGCC	3 cut(s)	1023, 1098, 1408
BspCNI	CTCAG	3 cut(s)	298, 421, 1393
BspFNI	CGCG	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	541
BspMAI	CTGCAG	1 cut(s)	30
BspPI	GGATC	2 cut(s)	388, 636
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	2 cut(s)	1150, 1314
BssECI	CCNNGG	6 cut(s)	95, 239, 321, 576, 902, 1212
BssMI	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
BssT1I	CCWWGG	4 cut(s)	95, 239, 902, 1212
Bst2UI	CCWGG	3 cut(s)	520, 657, 683
Bst4CI	ACNGT	4 cut(s)	46, 138, 610, 1106
BstDEI	CTNAG	4 cut(s)	306, 351, 429, 1401
BstDSI	CCRYGG	3 cut(s)	239, 321, 902
BstEII	GGTNACC	1 cut(s)	1217
BstF5I	GGATG	3 cut(s)	494, 586, 823
BstFNI	CGCG	1 cut(s)	795
BstHHI	GCGC	1 cut(s)	797
BstKTI	GATC	6 cut(s)	157, 383, 402, 631, 1018, 1180
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 1020
BstNI	CCWGG	3 cut(s)	520, 657, 683
BstPAI	GACNNNNGTC	1 cut(s)	842
BstPI	GGTNACC	1 cut(s)	1217
BstSCI	CCNGG	3 cut(s)	518, 655, 681
BstSFI	CTRYAG	4 cut(s)	26, 134, 609, 1466
BstUI	CGCG	1 cut(s)	795
BstV1I	GCAGC	4 cut(s)	12, 333, 601, 789
BstV2I	GAAGAC	5 cut(s)	641, 670, 867, 974, 1053
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	1023, 1098, 1408
BtgI	CCRYGG	3 cut(s)	239, 321, 902
BtsCI	GGATG	3 cut(s)	494, 586, 823
BtsIMutI	CAGTG	2 cut(s)	51, 1437
CfoI	GCGC	1 cut(s)	797
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	283, 464
CviAII	CATG	7 cut(s)	121, 214, 240, 857, 903, 953, 1322
CviQI	GTAC	2 cut(s)	283, 464
DdeI	CTNAG	4 cut(s)	306, 351, 429, 1401
DpnI	GATC	6 cut(s)	156, 382, 401, 630, 1017, 1179
DpnII	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
DraI	TTTAAA	1 cut(s)	513
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
EaeI	YGGCCR	1 cut(s)	1096
EciI	GGCGGA	1 cut(s)	465
Eco130I	CCWWGG	4 cut(s)	95, 239, 902, 1212
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	276, 624
Eco91I	GGTNACC	1 cut(s)	1217
EcoO65I	GGTNACC	1 cut(s)	1217
EcoRII	CCWGG	3 cut(s)	518, 655, 681
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	4 cut(s)	95, 239, 902, 1212
EcoT22I	ATGCAT	1 cut(s)	954
ErhI	CCWWGG	4 cut(s)	95, 239, 902, 1212
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	7 cut(s)	124, 217, 243, 860, 906, 956, 1325
FatI	CATG	7 cut(s)	120, 213, 239, 856, 902, 952, 1321
FauI	CCCGC	1 cut(s)	359
FbaI	TGATCA	2 cut(s)	154, 399
FblI	GTMKAC	3 cut(s)	144, 556, 572
Fnu4HI	GCNGC	5 cut(s)	8, 26, 347, 615, 778
FokI	GGATG	3 cut(s)	481, 593, 830
Fsp4HI	GCNGC	5 cut(s)	8, 26, 347, 615, 778
FspBI	CTAG	3 cut(s)	440, 1266, 1283
GlaI	GCGC	1 cut(s)	796
GluI	GCNGC	5 cut(s)	8, 26, 347, 615, 778
HaeIII	GGCC	3 cut(s)	1023, 1098, 1408
HgaI	GACGC	1 cut(s)	769
HhaI	GCGC	1 cut(s)	797
Hin1II	CATG	7 cut(s)	124, 217, 243, 860, 906, 956, 1325
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HincII	GTYRAC	3 cut(s)	145, 233, 837
HindII	GTYRAC	3 cut(s)	145, 233, 837
HinfI	GANTC	3 cut(s)	130, 549, 914
HphI	GGTGA	6 cut(s)	289, 968, 995, 1049, 1118, 1229
Hpy166II	GTNNAC	8 cut(s)	145, 233, 445, 466, 557, 573, 837, 1455
Hpy188I	TCNGA	4 cut(s)	430, 580, 633, 1363
Hpy188III	TCNNGA	4 cut(s)	456, 701, 735, 815
Hpy8I	GTNNAC	8 cut(s)	145, 233, 445, 466, 557, 573, 837, 1455
Hpy99I	CGWCG	2 cut(s)	231, 785
HpyAV	CCTTC	6 cut(s)	310, 508, 732, 1058, 1076, 1268
HpyCH4III	ACNGT	4 cut(s)	46, 138, 610, 1106
HpyCH4IV	ACGT	1 cut(s)	839
HpyCH4V	TGCA	7 cut(s)	28, 270, 617, 651, 952, 1155, 1307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 1020
HpyF3I	CTNAG	4 cut(s)	306, 351, 429, 1401
HpySE526I	ACGT	1 cut(s)	839
Hsp92II	CATG	7 cut(s)	124, 217, 243, 860, 906, 956, 1325
HspAI	GCGC	1 cut(s)	795
Ksp22I	TGATCA	2 cut(s)	154, 399
Kzo9I	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
Lsp1109I	GCAGC	4 cut(s)	12, 333, 601, 789
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	3 cut(s)	440, 1266, 1283
MaeII	ACGT	1 cut(s)	839
MaeIII	GTNAC	3 cut(s)	1100, 1217, 1268
MalI	GATC	6 cut(s)	156, 382, 401, 630, 1017, 1179
MboI	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	9 cut(s)	195, 265, 450, 489, 589, 768, 1192, 1291, 1331
MnlI	CCTC	9 cut(s)	156, 183, 586, 619, 722, 888, 1027, 1036, 1398
Mph1103I	ATGCAT	1 cut(s)	954
MroXI	GAANNNNTTC	1 cut(s)	1341
MslI	CAYNNNNRTG	2 cut(s)	125, 957
MspR9I	CCNGG	3 cut(s)	520, 657, 683
MvaI	CCWGG	3 cut(s)	520, 657, 683
MvnI	CGCG	1 cut(s)	795
MwoI	GCNNNNNNNGC	2 cut(s)	352, 1020
NcoI	CCATGG	2 cut(s)	239, 902
NdeII	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
NlaIII	CATG	7 cut(s)	124, 217, 243, 860, 906, 956, 1325
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	2 cut(s)	1100, 1217
NsiI	ATGCAT	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	1341
PfeI	GAWTC	3 cut(s)	130, 549, 914
PflMI	CCANNNNNTGG	2 cut(s)	525, 1327
PkrI	GCNGC	5 cut(s)	9, 27, 348, 616, 779
PshAI	GACNNNNGTC	1 cut(s)	842
PshBI	ATTAAT	1 cut(s)	1005
Psp6I	CCWGG	3 cut(s)	518, 655, 681
PspEI	GGTNACC	1 cut(s)	1217
PspGI	CCWGG	3 cut(s)	518, 655, 681
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	2 cut(s)	284, 465
RsaNI	GTAC	2 cut(s)	283, 464
RseI	CAYNNNNRTG	2 cut(s)	125, 957
SalI	GTCGAC	1 cut(s)	143
SatI	GCNGC	5 cut(s)	8, 26, 347, 615, 778
Sau3AI	GATC	6 cut(s)	154, 380, 399, 628, 1015, 1177
Sau96I	GGNCC	1 cut(s)	273
ScaI	AGTACT	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	520, 657, 683
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	808
SfcI	CTRYAG	4 cut(s)	26, 134, 609, 1466
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	125, 957
SmlI	CTYRAG	2 cut(s)	286, 481
SmoI	CTYRAG	2 cut(s)	286, 481
Sse9I	AATT	9 cut(s)	195, 265, 450, 489, 589, 768, 1192, 1291, 1331
SsiI	CCGC	4 cut(s)	7, 366, 476, 1092
SspI	AATATT	1 cut(s)	1135
SspMI	CTAG	3 cut(s)	440, 1266, 1283
StyD4I	CCNGG	3 cut(s)	518, 655, 681
StyI	CCWWGG	4 cut(s)	95, 239, 902, 1212
TaaI	ACNGT	4 cut(s)	46, 138, 610, 1106
TaiI	ACGT	1 cut(s)	842
TaqI	TCGA	3 cut(s)	144, 624, 1386
TasI	AATT	9 cut(s)	195, 265, 450, 489, 589, 768, 1192, 1291, 1331
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	3 cut(s)	130, 549, 914
TscAI	CASTG	2 cut(s)	51, 1437
TseFI	GTSAC	2 cut(s)	1100, 1217
TseI	GCWGC	4 cut(s)	25, 346, 614, 777
Tsp45I	GTSAC	2 cut(s)	1100, 1217
TspDTI	ATGAA	7 cut(s)	202, 873, 1002, 1095, 1131, 1325, 1338
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	51, 1437
Van91I	CCANNNNNTGG	2 cut(s)	525, 1327
VpaK11BI	GGWCC	1 cut(s)	273
VspI	ATTAAT	1 cut(s)	1005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XmiI	GTMKAC	3 cut(s)	144, 556, 572
XmnI	GAANNNNTTC	1 cut(s)	1341
XspI	CTAG	3 cut(s)	440, 1266, 1283
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.