RchiOBHm_Chr7g0220351

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
39221635 .. 39224264
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19725

Sequence Viewer

Length: 273 bp
ATGTCGTTCATGAAAGGAGATTTACTTACTAAAACCAGAAAGCTGGTCAAAGGCTTGGCCAAGGCTGAGCCTGTTTGGTACAAAGCCATGGAACAAGCACCACCTCCAACATTTCCTCGTGCTGATGCAATTCAGAGGATCGCTCTCCCAGAGGATGTTTACATAAAAAGTTTTTTAAGAAGCATCCAGATTCCAAACATGAAGATGCAATCAAGTTTTCTGCTTTTGATCCTGCTCCAGCCCGTATATTTGGTTGTCGGGTGCTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.2

Weight (kDa)

9.78

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 146, 223
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 1 cut(s) 80
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AlwI GGATC 2 cut(s) 146, 223
AoxI GGCC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 59
BauI CACGAG 1 cut(s) 117
BlpI GCTNAGC 1 cut(s) 66
BmsI GCATC 3 cut(s) 115, 192, 195
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BpmI CTGGAG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 60, 87
BseDI CCNNGG 2 cut(s) 60, 87
BseGI GGATG 2 cut(s) 160, 183
BseMII CTCAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 59
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 138, 228
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 87
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 9
BspPI GGATC 2 cut(s) 146, 223
BssECI CCNNGG 2 cut(s) 60, 87
BssMI GATC 2 cut(s) 138, 228
BssSI CACGAG 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 60, 87
Bst2BI CACGAG 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 160, 183
BstKTI GATC 2 cut(s) 141, 231
BstMBI GATC 2 cut(s) 138, 228
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 160, 183
CciI TCATGA 1 cut(s) 9
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 10, 88, 199
CviJI RGCY 7 cut(s) 43, 54, 59, 65, 70, 86, 241
CviKI_1 RGCY 7 cut(s) 43, 54, 59, 65, 70, 86, 241
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 140, 230
DpnII GATC 2 cut(s) 138, 228
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 60, 87
EcoT14I CCWWGG 2 cut(s) 60, 87
ErhI CCWWGG 2 cut(s) 60, 87
FaeI CATG 3 cut(s) 13, 91, 202
FaiI YATR 5 cut(s) 11, 89, 164, 200, 247
FatI CATG 3 cut(s) 9, 87, 198
FokI GGATG 2 cut(s) 167, 170
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 3 cut(s) 13, 91, 202
HinfI GANTC 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 10, 187
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 128, 208
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 3 cut(s) 13, 91, 202
Kzo9I GATC 2 cut(s) 138, 228
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 7 cut(s) 29, 49, 84, 162, 200, 245, 251
LweI GCATC 3 cut(s) 115, 192, 195
MalI GATC 2 cut(s) 140, 230
MboI GATC 2 cut(s) 138, 228
MboII GAAGA 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 4 cut(s) 114, 126, 129, 145
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 59
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 138, 228
NlaIII CATG 3 cut(s) 13, 91, 202
PagI TCATGA 1 cut(s) 9
PfeI GAWTC 1 cut(s) 190
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 2 cut(s) 138, 228
SetI ASST 2 cut(s) 45, 106
SfaNI GCATC 3 cut(s) 115, 192, 195
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 129
StyI CCWWGG 2 cut(s) 60, 87
TasI AATT 1 cut(s) 129
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 26, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.