Rh6DG169300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005165
Physical Location & Seq
Forward (+)
26199423 .. 26241202
41780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG169300.1

Sequence Viewer

Length: 501 bp
ATGTCGTTCATGAAAGGAGATTTACTTACTAAAACCAGAAAGCTGGTCAAAGGCTTGGCCAAGGCTGAGCCTGTTTGGGACAAAGCCATGGAACAAGCACCGCCCCCAACATTTCCTCGTGCTGATGCAATTCAGAGGATCACTCTCCTAGAGGATGTTTACATAAAAAAGTTTTTTGCTTTTGATCCTGCTCCAGCCCATATATTTGGTCATCGGGTGCTTGAGTTGAAGGAGCAGGGGGCTTCTGAACAGGAAGCAATGGCGGTAGCTGATATGGAATACTGGGCAGAGATAAAGGCAAAGAAGAAGGCATATGTTGCGTTGAAGAAAATTGCACGTCAACAAGGAAAGAGGCCTCCTCCCAACCCATATCCCAGTGTTGTCAAGGAGATACAAGCTGAGGAGAAGAATTCAACATCGAGTTCTTGGAAGGATGCTGCAAGGGAGTTAAGGTTCACCTTGCAGATTGTAGTACTTAAGGTGTTTGGAGCTTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.76

Weight (kDa)

9.45

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 101, 263
AclWI GGATC 2 cut(s) 146, 179
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 1 cut(s) 474
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 3 cut(s) 229, 325, 414
AjiI CACGTC 1 cut(s) 338
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 4 cut(s) 43, 269, 398, 491
AluI AGCT 4 cut(s) 43, 269, 398, 491
AlwI GGATC 2 cut(s) 146, 179
AoxI GGCC 2 cut(s) 57, 353
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 448
BalI TGGCCA 1 cut(s) 59
BauI CACGAG 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 424
BfaI CTAG 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 1 cut(s) 438
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 439
BmcAI AGTACT 1 cut(s) 474
BmgBI CACGTC 1 cut(s) 338
BmrI ACTGGG 2 cut(s) 292, 369
BmsI GCATC 2 cut(s) 115, 424
BmuI ACTGGG 2 cut(s) 292, 369
BplI GAGNNNNNCTC 4 cut(s) 127, 159, 343, 375
BpmI CTGGAG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 399
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 60, 87
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bse1I ACTGG 2 cut(s) 287, 375
Bse3DI GCAATG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 60, 87
BseGI GGATG 2 cut(s) 160, 439
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 57, 390
BseNI ACTGG 2 cut(s) 287, 375
BseRI GAGGAG 2 cut(s) 348, 416
BseXI GCAGC 1 cut(s) 424
BshFI GGCC 2 cut(s) 59, 355
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 2 cut(s) 59, 355
Bsp143I GATC 2 cut(s) 138, 184
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 2 cut(s) 101, 263
BspANI GGCC 2 cut(s) 59, 355
BspCNI CTCAG 2 cut(s) 58, 391
BspHI TCATGA 1 cut(s) 9
BspPI GGATC 2 cut(s) 146, 179
BspTI CTTAAG 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 287, 375
BssECI CCNNGG 2 cut(s) 60, 87
BssMI GATC 2 cut(s) 138, 184
BssSI CACGAG 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 60, 87
Bst2BI CACGAG 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 66, 399
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 160, 439
BstKTI GATC 2 cut(s) 141, 187
BstMBI GATC 2 cut(s) 138, 184
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 424
BstXI CCANNNNNNTGG 2 cut(s) 43, 206
BsuRI GGCC 2 cut(s) 59, 355
BtgI CCRYGG 1 cut(s) 87
BtrI CACGTC 1 cut(s) 338
BtsCI GGATG 2 cut(s) 160, 439
BtsIMutI CAGTG 1 cut(s) 382
CciI TCATGA 1 cut(s) 9
Csp6I GTAC 1 cut(s) 473
CviAII CATG 2 cut(s) 10, 88
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 2 cut(s) 66, 399
DpnI GATC 2 cut(s) 140, 186
DpnII GATC 2 cut(s) 138, 184
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 60, 87
Eco147I AGGCCT 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 60, 87
ErhI CCWWGG 2 cut(s) 60, 87
FaeI CATG 2 cut(s) 13, 91
FaiI YATR 9 cut(s) 11, 89, 164, 201, 203, 275, 313, 315, 370
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 9, 87
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 2 cut(s) 167, 446
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 1 cut(s) 149
GluI GCNGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 2 cut(s) 59, 355
Hin1II CATG 2 cut(s) 13, 91
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 3 cut(s) 160, 341, 456
Hpy188I TCNGA 2 cut(s) 135, 247
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 3 cut(s) 160, 341, 456
HpyAV CCTTC 3 cut(s) 223, 301, 424
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 4 cut(s) 128, 335, 440, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 66, 399
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 2 cut(s) 13, 91
Kzo9I GATC 2 cut(s) 138, 184
LmnI GCTCC 3 cut(s) 196, 232, 488
LpnPI CCDG 9 cut(s) 29, 49, 84, 201, 207, 221, 236, 268, 388
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 2 cut(s) 115, 424
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 337
MalI GATC 2 cut(s) 140, 186
MboI GATC 2 cut(s) 138, 184
MboII GAAGA 3 cut(s) 316, 337, 418
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 129, 330, 409
MluNI TGGCCA 1 cut(s) 59
MnlI CCTC 7 cut(s) 126, 129, 145, 345, 366, 369, 394
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 449, 477
Msp20I TGGCCA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 317
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 138, 184
NlaIII CATG 2 cut(s) 13, 91
PagI TCATGA 1 cut(s) 9
PceI AGGCCT 1 cut(s) 355
PkrI GCNGC 1 cut(s) 439
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 449, 477
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 138, 184
ScaI AGTACT 1 cut(s) 474
SetI ASST 8 cut(s) 45, 271, 340, 400, 455, 461, 483, 493
SfaNI GCATC 2 cut(s) 115, 424
SmlI CTYRAG 2 cut(s) 221, 476
SmoI CTYRAG 2 cut(s) 221, 476
Sse9I AATT 3 cut(s) 129, 330, 409
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 2 cut(s) 101, 263
SspMI CTAG 1 cut(s) 149
StuI AGGCCT 1 cut(s) 355
StyI CCWWGG 2 cut(s) 60, 87
TaiI ACGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 419
TasI AATT 3 cut(s) 129, 330, 409
TatI WGTACW 1 cut(s) 472
Tru1I TTAA 2 cut(s) 449, 477
Tru9I TTAA 2 cut(s) 449, 477
TscAI CASTG 1 cut(s) 382
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 382
Vha464I CTTAAG 1 cut(s) 476
XapI RAATTY 1 cut(s) 409
XspI CTAG 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.