Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005165

Physical Location & Seq

Genomic Coordinates Forward (+)

16680289 .. 16682608

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1063000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCGTTCATGAAGGGAGATTTACTTACGAGAACTAGAAAGCTGGTGAAGGGCCTGGCCAAGGCCGAGCCTGTTTGGCTCAAAGCCATGGAAAAGGCACCGCCTGTAACGTTTCCTCGTGCAAATGCAATTCAGAAAATCACTCTCCCAGAGGATGTTTACATAAAGAAGTTTTTCCAGAAGCATCCAGATTCCAAACATGAAGATGCCATCAAGATTTCTTCTTTTGATCCTCCTCCAGCCCGTATATTTGGTTTGCGGGTACTTGTGTTGAAGGAGCAAGGTGTTGCTGAGGAAGAAGCAATGGCAGTAGCTGATATGGAATACCGGATGGAGAGAAAAGAGAAGAAGAAGGCATATTCCCGCTTGAAGAAAATTGCACGCCTTCAAGGGAAGAGGCCTCCTCCCAACCCATATCCCAGCGCTATCAAGGAAATACAAGCTGAGGAGAAGAAGTTTGTTCGTGACCGTTTTTACAATCCCAAAATTATTCAACTTGTAAGGCAATTGCAAGAGGACAAGGCAGCTGAAGCGCAGGAGAGATTCAGAGCAGGAGGAGGTTCCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.68

Weight (kDa)

9.93

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26750
fragaria_vesca	FvH4_1g30250 FvH4_1g30250 FvH4_1g30250 FvH4_1g30250
malus_domestica	MD01G1063000.v1.1 MD07G1136300.v1.1
prunus_persica	Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1
pyrus_communis	pycom01g09340 pycom07g13360
rosa_chinensis	RchiOBHm_Chr6g0271051 RchiOBHm_Chr7g0220351
rosa_laevigata	RLG00000002228
rosa_multiflora	Rmu_sc0001136.1_g000086 Rmu_sc0001565.1_g000063
rosa_roxburghii	Rroxscaffold_3G00239510
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG178100 Rh6BG181300 Rh6CG177100 Rh6DG169300 Rh7AG334400 Rh7BG325300 Rh7CG352100 Rh7DG331100
rosa_wichuraiana	Rw0G009890 Rw7G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AciI	CCGC	3 cut(s)	101, 259, 364
AclI	AACGTT	1 cut(s)	110
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	264
AfeI	AGCGCT	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	274, 370, 389, 494
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	43, 314, 443, 527
AluI	AGCT	4 cut(s)	43, 314, 443, 527
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	314
Aor51HI	AGCGCT	1 cut(s)	424
AoxI	GGCC	4 cut(s)	52, 57, 63, 398
ApeKI	GCWGC	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	2 cut(s)	425, 535
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	254, 287
BalI	TGGCCA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	117
BbvCI	CCTCAGC	2 cut(s)	291, 444
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	2 cut(s)	218, 325
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	565
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	56, 565
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	99, 562
BmrFI	CCNGG	2 cut(s)	56, 565
BmsI	GCATC	2 cut(s)	193, 196
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	2 cut(s)	291, 444
BpuMI	CCSGG	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	60, 87
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	60, 87
BseGI	GGATG	3 cut(s)	160, 184, 336
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	282, 435
BseRI	GAGGAG	4 cut(s)	225, 393, 461, 570
BseXI	GCAGC	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	4 cut(s)	54, 59, 65, 400
BshNI	GGYRCC	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	328, 564
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	4 cut(s)	54, 59, 65, 400
Bsp143I	GATC	1 cut(s)	229
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	3 cut(s)	101, 259, 364
BspANI	GGCC	4 cut(s)	54, 59, 65, 400
BspCNI	CTCAG	2 cut(s)	283, 436
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	99, 562
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	60, 87
BssMI	GATC	1 cut(s)	229
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	60, 87
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	291, 444
BstDSI	CCRYGG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	160, 184, 336
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	2 cut(s)	425, 535
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 530
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	54, 563
BstV1I	GCAGC	1 cut(s)	536
BsuRI	GGCC	4 cut(s)	54, 59, 65, 400
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	160, 184, 336
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	2 cut(s)	425, 535
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	3 cut(s)	10, 88, 200
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	291, 444
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	60, 87
Eco147I	AGGCCT	1 cut(s)	400
Eco47III	AGCGCT	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	60, 87
ErhI	CCWWGG	2 cut(s)	60, 87
FaeI	CATG	3 cut(s)	13, 91, 203
FaiI	YATR	8 cut(s)	11, 89, 164, 201, 248, 320, 358, 415
FatI	CATG	3 cut(s)	9, 87, 199
FauI	CCCGC	2 cut(s)	252, 371
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	3 cut(s)	167, 171, 343
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	424, 534
GluI	GCNGC	1 cut(s)	525
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	4 cut(s)	54, 59, 65, 400
HapII	CCGG	2 cut(s)	328, 564
HhaI	GCGC	2 cut(s)	425, 535
Hin1II	CATG	3 cut(s)	13, 91, 203
Hin6I	GCGC	2 cut(s)	423, 533
HinP1I	GCGC	2 cut(s)	423, 533
HinfI	GANTC	2 cut(s)	191, 543
HpaII	CCGG	2 cut(s)	328, 564
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	135, 548
Hpy188III	TCNNGA	5 cut(s)	10, 178, 188, 214, 464
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	7, 43, 268, 346, 395
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	122, 128, 380, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 530
HpyF3I	CTNAG	2 cut(s)	291, 444
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	13, 91, 203
HspAI	GCGC	2 cut(s)	423, 533
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	2 cut(s)	193, 196
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	106, 464
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	8 cut(s)	213, 215, 308, 358, 361, 382, 406, 463
MfeI	CAATTG	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	4 cut(s)	129, 375, 486, 506
MluNI	TGGCCA	1 cut(s)	59
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	328, 564
MspR9I	CCNGG	2 cut(s)	56, 565
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	76, 530
NciI	CCSGG	1 cut(s)	565
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	3 cut(s)	13, 91, 203
NlaIV	GGNNCC	2 cut(s)	99, 562
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	464
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	191, 543
PkrI	GCNGC	1 cut(s)	526
Psp1406I	AACGTT	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	99, 562
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	204
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	56, 565
SetI	ASST	7 cut(s)	45, 113, 286, 316, 445, 529, 562
SfaNI	GCATC	2 cut(s)	193, 196
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	129, 375, 486, 506
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	3 cut(s)	101, 259, 364
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	400
StyD4I	CCNGG	2 cut(s)	54, 563
StyI	CCWWGG	2 cut(s)	60, 87
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	113
TasI	AATT	4 cut(s)	129, 375, 486, 506
TfiI	GAWTC	2 cut(s)	191, 543
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	26, 216
XagI	CCTNNNNNAGG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.