Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005165

Physical Location & Seq

Genomic Coordinates Forward (+)

30113270 .. 30116492

Gene Structure 3223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGCGGAAACAGGCTGCACGACAGAACCCATCGAGCCCGGTTAGAAGAAAAAGAAACCCTCGCTCGCTCACAGAACCTCACTTCCTCAATTCCTCTACCTAAACGTTGTCTCTTCCTAAAGGATTTCTCTTTCAATACTCCGACGCCCTTGCTGAAACCCTCAACTCGACCACTTCAGTCTTCAGTTTCTAGAAAGCTGGTCAAAGGCTTGGCCAAGGCTGAGCCTGTTTGGTACAAAGCCATGGAACAAGCACCACCTCCAACATTTCCTCGTGCTGATGCAATTCAGAGGATCACTCTCCCAGAGGATGTTTACATAAAAAAGTTTTTTAAGAAGCATCCAGATTCCAAACATGAAGACGCAATCAAGTTTTCTGCTTTTGATCCTGCACCAGCCCGTATATTTGGTCGTCGGGTGCTTGAGTTGAAGGAGCAGGGGGTTTCTGAACAGGAAGCAATGGCGGTGGCTGATATGGAATACCGGGCAGAGATAAAGGCAAAGAAGAAGGCATATGTTGCGTTGAAGAAAATTGCACGTCAACAAGGAAAGAGGCCTCCTCCCAACCCATATCCCAATGTTGTCAAGGAGATACAAGCTGAGGAGAAGAAGTATGTCTATGACCGTTTTCACAATCCAAGAATTCGCCAGATTTTAAGGAAACTGCAAGAGGAAAAGGCAGTTGAGGATCAGGACAGAATGAGAGGGGGTTGGGGTGGGGGTGGCGGTGGTGATGGTGGTGGCAGTGGTGGTGTTGGTGGTTGGGGAAGCAGTGGCAGTGGCGGTGGCGGTGGCATGGGTGGTGGTGGTGGTTGGGGAAGCAATGGCAGTGGTGGTGGTTGGGGAAGCAGTGGCAGTGCTGGAGCCGGCATGGGTGGCGGTGGTTGGAGAAGTAGTGGCGGTGGCGGCATGGGTGGCGGTGGCAGTGGCAGTGGTGGTTGGGGTGGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

33.73

Weight (kDa)

10.04

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26750
fragaria_vesca	FvH4_1g30250 FvH4_1g30250 FvH4_1g30250 FvH4_1g30250
malus_domestica	MD01G1063000.v1.1 MD07G1136300.v1.1
prunus_persica	Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1
pyrus_communis	pycom01g09340 pycom07g13360
rosa_chinensis	RchiOBHm_Chr6g0271051 RchiOBHm_Chr7g0220351
rosa_laevigata	RLG00000002228
rosa_multiflora	Rmu_sc0001136.1_g000086 Rmu_sc0001565.1_g000063
rosa_roxburghii	Rroxscaffold_3G00239510
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG178100 Rh6BG181300 Rh6CG177100 Rh6DG169300 Rh7AG334400 Rh7BG325300 Rh7CG352100 Rh7DG331100
rosa_wichuraiana	Rw0G009890 Rw7G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	6, 464, 726, 783, 789, 879, 900, 906, 918
AclI	AACGTT	1 cut(s)	106
AclWI	GGATC	3 cut(s)	302, 380, 696
AcoI	YGGCCR	2 cut(s)	213, 946
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	2 cut(s)	161, 168
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	136, 430, 526
AjiI	CACGTC	1 cut(s)	539
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	2 cut(s)	199, 599
AluI	AGCT	2 cut(s)	199, 599
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	302, 380, 696
AoxI	GGCC	3 cut(s)	213, 554, 946
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	642
AsuC2I	CCSGG	2 cut(s)	40, 485
AsuHPI	GGTGA	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	174, 366
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	2 cut(s)	39, 728
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BcnI	CCSGG	2 cut(s)	40, 485
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	2 cut(s)	17, 907
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	2 cut(s)	18, 908
Bme1390I	CCNGG	2 cut(s)	40, 485
BmgBI	CACGTC	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	865
BmrFI	CCNGG	2 cut(s)	40, 485
BmsI	GCATC	2 cut(s)	271, 349
BpiI	GAAGAC	2 cut(s)	174, 366
BplI	GAGNNNNNCTC	4 cut(s)	283, 315, 544, 576
BpmI	CTGGAG	1 cut(s)	882
Bpu10I	CCTNAGC	1 cut(s)	600
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	2 cut(s)	40, 485
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	216, 243
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 880, 910
Bse118I	RCCGGY	2 cut(s)	866, 948
Bse3DI	GCAATG	2 cut(s)	465, 829
BseDI	CCNNGG	2 cut(s)	216, 243
BseGI	GGATG	2 cut(s)	316, 340
BseMI	GCAATG	2 cut(s)	465, 829
BseMII	CTCAG	2 cut(s)	213, 591
BseRI	GAGGAG	2 cut(s)	549, 617
BseXI	GCAGC	1 cut(s)	3
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	3 cut(s)	215, 556, 948
BsiSI	CCGG	4 cut(s)	40, 484, 867, 949
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	215, 556, 948
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	294, 385, 688
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	9 cut(s)	6, 464, 726, 783, 789, 879, 900, 906, 918
BspANI	GGCC	3 cut(s)	215, 556, 948
BspCNI	CTCAG	2 cut(s)	214, 592
BspLI	GGNNCC	1 cut(s)	865
BspPI	GGATC	3 cut(s)	302, 380, 696
BsrDI	GCAATG	2 cut(s)	465, 829
BsrFI	RCCGGY	2 cut(s)	866, 948
BssAI	RCCGGY	2 cut(s)	866, 948
BssECI	CCNNGG	2 cut(s)	216, 243
BssMI	GATC	3 cut(s)	294, 385, 688
BssNI	GRCGYC	1 cut(s)	146
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	216, 243
Bst2BI	CACGAG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	67, 868
BstDEI	CTNAG	2 cut(s)	222, 600
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	316, 340
BstKTI	GATC	3 cut(s)	297, 388, 691
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	294, 385, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	518, 876, 906, 915
BstSCI	CCNGG	2 cut(s)	38, 483
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	2 cut(s)	174, 366
BsuRI	GGCC	3 cut(s)	215, 556, 948
BtgI	CCRYGG	1 cut(s)	243
BtrI	CACGTC	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	316, 340
BtsI	GCAGTG	8 cut(s)	751, 778, 784, 835, 856, 862, 931, 937
BtsIMutI	CAGTG	8 cut(s)	751, 778, 784, 835, 856, 862, 931, 937
Cac8I	GCNNGC	2 cut(s)	67, 868
Cfr10I	RCCGGY	2 cut(s)	866, 948
CseI	GACGC	2 cut(s)	154, 371
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	4 cut(s)	447, 482, 811, 846
CviAII	CATG	5 cut(s)	244, 356, 796, 871, 910
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	222, 600
DpnI	GATC	3 cut(s)	296, 387, 690
DpnII	GATC	3 cut(s)	294, 385, 688
EaeI	YGGCCR	2 cut(s)	213, 946
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	216, 243
Eco147I	AGGCCT	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	161, 168
EcoRI	GAATTC	1 cut(s)	642
EcoT14I	CCWWGG	2 cut(s)	216, 243
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	216, 243
FaeI	CATG	5 cut(s)	247, 359, 799, 874, 913
FatI	CATG	5 cut(s)	243, 355, 795, 870, 909
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	17, 907
FokI	GGATG	2 cut(s)	323, 327
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	17, 907
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	2 cut(s)	17, 907
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	3 cut(s)	215, 556, 948
HapII	CCGG	4 cut(s)	40, 484, 867, 949
HgaI	GACGC	2 cut(s)	154, 371
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	5 cut(s)	247, 359, 799, 874, 913
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	4 cut(s)	40, 484, 867, 949
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	2 cut(s)	316, 542
Hpy188I	TCNGA	3 cut(s)	144, 291, 448
Hpy188III	TCNNGA	3 cut(s)	192, 344, 692
Hpy8I	GTNNAC	2 cut(s)	316, 542
Hpy99I	CGWCG	2 cut(s)	148, 417
HpyAV	CCTTC	2 cut(s)	424, 502
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	106, 538
HpyCH4V	TGCA	5 cut(s)	19, 284, 392, 536, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	518, 876, 906, 915
HpyF3I	CTNAG	2 cut(s)	222, 600
HpySE526I	ACGT	2 cut(s)	106, 538
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	5 cut(s)	247, 359, 799, 874, 913
KroI	GCCGGC	1 cut(s)	866
KroNI	GCCGGC	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	294, 385, 688
LmnI	GCTCC	2 cut(s)	433, 863
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	2 cut(s)	271, 349
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	106, 538
MalI	GATC	3 cut(s)	296, 387, 690
MboI	GATC	3 cut(s)	294, 385, 688
MboII	GAAGA	7 cut(s)	59, 106, 174, 371, 517, 538, 619
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	4 cut(s)	90, 285, 531, 642
MluNI	TGGCCA	1 cut(s)	215
MmeI	TCCRAC	3 cut(s)	167, 287, 866
Mox20I	TGGCCA	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	866
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	2 cut(s)	333, 656
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	4 cut(s)	40, 484, 867, 949
MspR9I	CCNGG	2 cut(s)	40, 485
MwoI	GCNNNNNNNGC	4 cut(s)	518, 876, 906, 915
NaeI	GCCGGC	1 cut(s)	868
NciI	CCSGG	2 cut(s)	40, 485
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	3 cut(s)	294, 385, 688
NgoMIV	GCCGGC	1 cut(s)	866
NlaIII	CATG	5 cut(s)	247, 359, 799, 874, 913
NlaIV	GGNNCC	1 cut(s)	865
PceI	AGGCCT	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	868
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	18, 908
Psp1406I	AACGTT	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	865
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	333, 656
SatI	GCNGC	2 cut(s)	17, 907
Sau3AI	GATC	3 cut(s)	294, 385, 688
ScrFI	CCNGG	2 cut(s)	40, 485
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	7 cut(s)	81, 103, 109, 201, 262, 541, 601
SfaNI	GCATC	2 cut(s)	271, 349
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	4 cut(s)	90, 285, 531, 642
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	9 cut(s)	6, 464, 726, 783, 789, 879, 900, 906, 918
SspMI	CTAG	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	556
StyD4I	CCNGG	2 cut(s)	38, 483
StyI	CCWWGG	2 cut(s)	216, 243
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	109, 541
TaqI	TCGA	2 cut(s)	34, 169
TasI	AATT	4 cut(s)	90, 285, 531, 642
TauI	GCSGC	1 cut(s)	909
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	333, 656
Tru9I	TTAA	2 cut(s)	333, 656
TscAI	CASTG	8 cut(s)	751, 778, 784, 835, 856, 862, 931, 937
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	8 cut(s)	751, 778, 784, 835, 856, 862, 931, 937
XapI	RAATTY	1 cut(s)	642
XbaI	TCTAGA	1 cut(s)	191
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.