Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005165

Physical Location & Seq

Genomic Coordinates Forward (+)

38300666 .. 38302159

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCGTTCATGAAAGGAGATTTACTTACTAAAACCAGAAAGCTGGTCAAAGGCTTGGCCAAGGCTGAGCCTGTTTGGTACAAAGCCATGGAACAAGCACCACCTCCAACATTTCCTCGTGCTGATGCAATTCAGAGGATCACTCTCCCAGAGGATGTTTACATAAAAAAGTTTTTTAAGAAGCATCCAGATTCCAAACATGAAGACGCAATCAAGTTTTCTGCCTTTGATCCTGCTCCAGCCCGTATATTTGGTTGTCGGGTGCTTGAGTTGAAGGAGCAGGGGGTTTTTGAACAGGAAGCTATGGCGGTGGCTGATAAAATTGCACGTCAACAAGGAAAGAGGCCTCCTCCCAACCCATATCCCAATGTTGTCAAGGAGATACAAGCTGAGGAGAAGAAGTATGTCTATGACCGTTTTCACAATCCAAGAATTCGCCAGATTTTAAGGAAGCTGCAAGAGGAAAAGGCAGTTGAGGATCAGGACAGAATGAGAGGGGGTTGGGGTGGCGGTGGCGGTGGTGGTGGTGGTGGCAATGGTGGTGTTGGTGGTGGTGGTGGTTGGGGAAGCAGTGGCGGCGGCGGCGGCGGCATGGGTGGCGGTGGTGGTTGGGGAAGCAGTGGCAGTGCTGGAGTTGGCATGGGTGGTGGTGGTTGGAGAAGCGGTGGCAGTGGCAGTGGTGGTTGGGGTGGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

24.47

Weight (kDa)

9.76

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26750
fragaria_vesca	FvH4_1g30250 FvH4_1g30250 FvH4_1g30250 FvH4_1g30250
malus_domestica	MD01G1063000.v1.1 MD07G1136300.v1.1
prunus_persica	Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1 Prupe.2G171300_v2.0.a1
pyrus_communis	pycom01g09340 pycom07g13360
rosa_chinensis	RchiOBHm_Chr6g0271051 RchiOBHm_Chr7g0220351
rosa_laevigata	RLG00000002228
rosa_multiflora	Rmu_sc0001136.1_g000086 Rmu_sc0001565.1_g000063
rosa_roxburghii	Rroxscaffold_3G00239510
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG178100 Rh6BG181300 Rh6CG177100 Rh6DG169300 Rh7AG334400 Rh7BG325300 Rh7CG352100 Rh7DG331100
rosa_wichuraiana	Rw0G009890 Rw7G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	146, 224, 486
AcoI	YGGCCR	2 cut(s)	57, 691
AcsI	RAATTY	1 cut(s)	432
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	274, 293
AjiI	CACGTC	1 cut(s)	329
AluBI	AGCT	4 cut(s)	43, 302, 389, 454
AluI	AGCT	4 cut(s)	43, 302, 389, 454
AlwI	GGATC	3 cut(s)	146, 224, 486
AoxI	GGCC	3 cut(s)	57, 344, 691
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	59
BauI	CACGAG	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	441
BisI	GCNGC	6 cut(s)	455, 577, 580, 583, 586, 589
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	6 cut(s)	456, 578, 581, 584, 587, 590
BmgBI	CACGTC	1 cut(s)	329
BmsI	GCATC	2 cut(s)	115, 193
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	4 cut(s)	127, 159, 334, 366
BpmI	CTGGAG	2 cut(s)	222, 651
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	60, 87
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 416, 649, 679
Bse118I	RCCGGY	1 cut(s)	693
Bse3DI	GCAATG	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	60, 87
BseGI	GGATG	2 cut(s)	160, 184
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	2 cut(s)	57, 381
BseRI	GAGGAG	2 cut(s)	339, 407
BseXI	GCAGC	1 cut(s)	441
BshFI	GGCC	3 cut(s)	59, 346, 693
BsiSI	CCGG	1 cut(s)	694
BsnI	GGCC	3 cut(s)	59, 346, 693
Bsp143I	GATC	3 cut(s)	138, 229, 478
Bsp1720I	GCTNAGC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	3 cut(s)	59, 346, 693
BspCNI	CTCAG	2 cut(s)	58, 382
BspHI	TCATGA	1 cut(s)	9
BspPI	GGATC	3 cut(s)	146, 224, 486
BsrDI	GCAATG	1 cut(s)	541
BsrFI	RCCGGY	1 cut(s)	693
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	2 cut(s)	60, 87
BssMI	GATC	3 cut(s)	138, 229, 478
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	60, 87
Bst2BI	CACGAG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	66, 390
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	160, 184
BstKTI	GATC	3 cut(s)	141, 232, 481
BstMBI	GATC	3 cut(s)	138, 229, 478
BstMWI	GCNNNNNNNGC	5 cut(s)	576, 582, 585, 588, 597
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	59, 346, 693
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	160, 184
BtsI	GCAGTG	5 cut(s)	577, 625, 631, 676, 682
BtsIMutI	CAGTG	5 cut(s)	577, 625, 631, 676, 682
CciI	TCATGA	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	693
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	5 cut(s)	10, 88, 200, 592, 640
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	66, 390
DpnI	GATC	3 cut(s)	140, 231, 480
DpnII	GATC	3 cut(s)	138, 229, 478
EaeI	YGGCCR	2 cut(s)	57, 691
Eco130I	CCWWGG	2 cut(s)	60, 87
Eco147I	AGGCCT	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	60, 87
ErhI	CCWWGG	2 cut(s)	60, 87
FaeI	CATG	5 cut(s)	13, 91, 203, 595, 643
FatI	CATG	5 cut(s)	9, 87, 199, 591, 639
Fnu4HI	GCNGC	6 cut(s)	455, 577, 580, 583, 586, 589
FokI	GGATG	2 cut(s)	167, 171
Fsp4HI	GCNGC	6 cut(s)	455, 577, 580, 583, 586, 589
GluI	GCNGC	6 cut(s)	455, 577, 580, 583, 586, 589
GsuI	CTGGAG	2 cut(s)	222, 651
HaeIII	GGCC	3 cut(s)	59, 346, 693
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	5 cut(s)	13, 91, 203, 595, 643
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	694
Hpy166II	GTNNAC	2 cut(s)	160, 332
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	3 cut(s)	10, 188, 482
Hpy8I	GTNNAC	2 cut(s)	160, 332
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	128, 326, 457
HpyF10VI	GCNNNNNNNGC	5 cut(s)	576, 582, 585, 588, 597
HpyF3I	CTNAG	2 cut(s)	66, 390
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	5 cut(s)	13, 91, 203, 595, 643
Kzo9I	GATC	3 cut(s)	138, 229, 478
LmnI	GCTCC	2 cut(s)	241, 277
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	2 cut(s)	115, 193
MaeII	ACGT	1 cut(s)	328
MalI	GATC	3 cut(s)	140, 231, 480
MboI	GATC	3 cut(s)	138, 229, 478
MboII	GAAGA	2 cut(s)	215, 409
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	3 cut(s)	129, 321, 432
MluNI	TGGCCA	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	131, 635
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	177, 446
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	1 cut(s)	694
MwoI	GCNNNNNNNGC	5 cut(s)	576, 582, 585, 588, 597
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	138, 229, 478
NlaIII	CATG	5 cut(s)	13, 91, 203, 595, 643
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	456, 578, 581, 584, 587, 590
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	177, 446
SatI	GCNGC	6 cut(s)	455, 577, 580, 583, 586, 589
Sau3AI	GATC	3 cut(s)	138, 229, 478
SetI	ASST	6 cut(s)	45, 106, 304, 331, 391, 456
SfaNI	GCATC	2 cut(s)	115, 193
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	129, 321, 432
SseBI	AGGCCT	1 cut(s)	346
StuI	AGGCCT	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	60, 87
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	331
TasI	AATT	3 cut(s)	129, 321, 432
TauI	GCSGC	5 cut(s)	579, 582, 585, 588, 591
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	177, 446
Tru9I	TTAA	2 cut(s)	177, 446
TscAI	CASTG	5 cut(s)	577, 625, 631, 676, 682
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	26, 216
TspRI	CASTG	5 cut(s)	577, 625, 631, 676, 682
XapI	RAATTY	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.