Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013922

Physical Location & Seq

Genomic Coordinates Reverse (-)

47290947 .. 47291871

Gene Structure 925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G582100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGAACCAAAGCCCATATTCCAACTTTCAACTATAAGCTTCTCCTCCTCGGAGTATTCCTTGCTTTTGTTGTCCTCTTTGTGTTCAGGTCAAGCTTTGATTCATCATCATCATCATCTTCTTCTTCTTCTTCCAATGAAAAATCCACCATTTTGCCAAGAGTACCCTTGGATGAGAAAGAAGCCGAGGATGATGAAAGATCAACAAAATGTGACACCCCATTGACTTGCAACAAAATCCCACCTTCCCTAGCCAAAGCTCTAATCCACTACACAACCTCAACCATCACCCCACAGCAAACCCTCAAAGAAATCTCAGTCACATCAAAGGTCCTAGACAAGAAATCACCCTGCAACTTCCTTGTCTTCGGCCTAGGCCACGACAGCCTCATGTGGAGCTCCCTCAACCACGGGGGGCGCACCATTTTCGTCGAAGAGGACGAGTCGTGGATCGAGCAAATCCAACGCCGTTTCCCCATGTTGGAGTCATACCATGTCACATATGACAGCAAGGTGAACCAGGCTGACAATCTCATGGATGTTGGGAAGGGCCCCGAGTGCACAGCAGTTGGTGATCCTAGGTATAGCATGTGCCAGCTGGCACTCAAGGGCTTGCCTAGTGAGGTTTACGATATCAAATGGGATTTGATTATGGTGGATGCGCCCACAGGGTATCACGATGAAGCACCGGGACGAATGAGCGCCATATACACAGCTGGGATGATGGCTAGGAACAAAGAGGAGGGAGAGACTGATGTGTTTGTGCATGATGTGAATAGGGTTGTTGAAGATAACTTCTCCAAGGCTTTCCTTTGTGAAGGTTACATGAAAAAGCAACAAGGGAGGTTGAGGCACTTCAATATTCCTAGTCACAGGGATGGTTCCCACAGGCCCTTCTGCCCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016740 GO:0016741 GO:0030775 GO:0032259 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

303

Amino Acids

34.05

Weight (kDa)

5.95

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09610
fragaria_vesca	FvH4_5g28110
malus_domestica	MD08G1244700.v1.1 MD15G1439800.v1.1
prunus_persica	Prupe.1G582100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271041
rosa_laevigata	RLG00000002227
rosa_multiflora	Rmu_co8384627.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197370
rosa_rugosa	Rorug06G0058100 Rorug07G0193100
rosa_samantha	Rh6AG177900 Rh6BG181200 Rh6CG177000 Rh6DG169200 Rh7BG325400
rosa_wichuraiana	Rw6G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	458, 569
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	31, 788, 859
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	6 cut(s)	40, 96, 260, 399, 598, 716
AluI	AGCT	6 cut(s)	40, 96, 260, 399, 598, 716
Alw21I	GWGCWC	2 cut(s)	401, 563
Alw26I	GTCTC	1 cut(s)	743
Alw44I	GTGCAC	1 cut(s)	559
AlwI	GGATC	2 cut(s)	458, 569
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	370, 376, 550, 890
ApaI	GGGCCC	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	559
AspA2I	CCTAGG	2 cut(s)	373, 578
AspLEI	GCGC	3 cut(s)	420, 664, 704
AspS9I	GGNCC	4 cut(s)	331, 550, 551, 891
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	4 cut(s)	280, 339, 526, 584
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	331
AvrII	CCTAGG	2 cut(s)	373, 578
BaeGI	GKGCMC	2 cut(s)	554, 563
BanII	GRGCYC	2 cut(s)	401, 554
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	2 cut(s)	401, 563
BccI	CCATC	3 cut(s)	293, 718, 872
BceAI	ACGGC	1 cut(s)	453
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	1 cut(s)	521
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	7 cut(s)	251, 335, 374, 579, 618, 729, 867
BfoI	RGCGCY	1 cut(s)	705
BlnI	CCTAGG	2 cut(s)	373, 578
Bme1390I	CCNGG	2 cut(s)	521, 690
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	4 cut(s)	331, 550, 551, 891
BmiI	GGNNCC	3 cut(s)	552, 553, 883
BmrFI	CCNGG	2 cut(s)	521, 690
BmsI	GCATC	1 cut(s)	649
BpiI	GAAGAC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	690
BsaJI	CCNNGG	7 cut(s)	49, 168, 186, 373, 409, 578, 801
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	7 cut(s)	49, 168, 186, 373, 409, 578, 801
BseGI	GGATG	6 cut(s)	178, 196, 544, 664, 726, 883
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	330, 894
BseRI	GAGGAG	3 cut(s)	35, 38, 755
BseSI	GKGCMC	2 cut(s)	554, 563
BseYI	CCCAGC	1 cut(s)	716
BshFI	GGCC	4 cut(s)	372, 378, 552, 892
BsiHKAI	GWGCWC	2 cut(s)	401, 563
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	4 cut(s)	372, 378, 552, 892
BsoBI	CYCGRG	1 cut(s)	554
Bsp120I	GGGCCC	1 cut(s)	550
Bsp1286I	GDGCHC	3 cut(s)	401, 554, 563
Bsp143I	GATC	3 cut(s)	200, 450, 574
BspANI	GGCC	4 cut(s)	372, 378, 552, 892
BspCNI	CTCAG	2 cut(s)	329, 895
BspLI	GGNNCC	3 cut(s)	552, 553, 883
BspPI	GGATC	2 cut(s)	458, 569
BssECI	CCNNGG	7 cut(s)	49, 168, 186, 373, 409, 578, 801
BssMI	GATC	3 cut(s)	200, 450, 574
BssT1I	CCWWGG	4 cut(s)	168, 373, 578, 801
Bst2UI	CCWGG	1 cut(s)	521
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	596, 600, 614
BstDEI	CTNAG	2 cut(s)	316, 903
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	6 cut(s)	178, 196, 544, 664, 726, 883
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	3 cut(s)	420, 664, 704
BstKTI	GATC	3 cut(s)	203, 453, 577
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	3 cut(s)	200, 450, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 558
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	519, 688
BstSLI	GKGCMC	2 cut(s)	554, 563
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	4 cut(s)	372, 378, 552, 892
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	6 cut(s)	178, 196, 544, 664, 726, 883
Cac8I	GCNNGC	3 cut(s)	596, 600, 614
CfoI	GCGC	3 cut(s)	420, 664, 704
Cfr13I	GGNCC	4 cut(s)	331, 550, 551, 891
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	7 cut(s)	391, 478, 494, 535, 589, 767, 826
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	316, 903
DpnI	GATC	3 cut(s)	202, 452, 576
DpnII	GATC	3 cut(s)	200, 450, 574
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	399
Eco130I	CCWWGG	4 cut(s)	168, 373, 578, 801
Eco24I	GRGCYC	2 cut(s)	401, 554
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	399
EcoO109I	RGGNCCY	4 cut(s)	331, 550, 551, 891
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	4 cut(s)	168, 373, 578, 801
EcoT38I	GRGCYC	2 cut(s)	401, 554
ErhI	CCWWGG	4 cut(s)	168, 373, 578, 801
FaeI	CATG	7 cut(s)	394, 481, 497, 538, 592, 770, 829
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	7 cut(s)	390, 477, 493, 534, 588, 766, 825
FauNDI	CATATG	1 cut(s)	502
FokI	GGATG	6 cut(s)	185, 203, 551, 671, 733, 890
FriOI	GRGCYC	2 cut(s)	401, 554
FspBI	CTAG	7 cut(s)	251, 335, 374, 579, 618, 729, 867
GlaI	GCGC	3 cut(s)	419, 663, 703
GsaI	CCCAGC	1 cut(s)	720
HaeII	RGCGCY	1 cut(s)	705
HaeIII	GGCC	4 cut(s)	372, 378, 552, 892
HapII	CCGG	1 cut(s)	689
HhaI	GCGC	3 cut(s)	420, 664, 704
Hin1II	CATG	7 cut(s)	394, 481, 497, 538, 592, 770, 829
Hin6I	GCGC	3 cut(s)	418, 662, 702
HinP1I	GCGC	3 cut(s)	418, 662, 702
HindIII	AAGCTT	2 cut(s)	38, 94
HinfI	GANTC	3 cut(s)	101, 443, 485
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	4 cut(s)	280, 339, 526, 584
Hpy166II	GTNNAC	3 cut(s)	517, 561, 628
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	3 cut(s)	517, 561, 628
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	4 cut(s)	255, 541, 812, 904
HpyCH4V	TGCA	4 cut(s)	231, 354, 561, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 558
HpyF3I	CTNAG	2 cut(s)	316, 903
Hsp92II	CATG	7 cut(s)	394, 481, 497, 538, 592, 770, 829
HspAI	GCGC	3 cut(s)	418, 662, 702
Kzo9I	GATC	3 cut(s)	200, 450, 574
LmnI	GCTCC	2 cut(s)	396, 404
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	7 cut(s)	251, 335, 374, 579, 618, 729, 867
MaeIII	GTNAC	5 cut(s)	212, 319, 496, 821, 869
MalI	GATC	3 cut(s)	202, 452, 576
MboI	GATC	3 cut(s)	200, 450, 574
MboII	GAAGA	8 cut(s)	111, 114, 117, 120, 123, 358, 446, 800
MhlI	GDGCHC	3 cut(s)	401, 554, 563
MlyI	GAGTC	2 cut(s)	452, 494
MmeI	TCCRAC	3 cut(s)	47, 462, 487
MslI	CAYNNNNRTG	1 cut(s)	876
MspA1I	CMGCKG	2 cut(s)	598, 716
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	2 cut(s)	521, 690
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	384, 558
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	3 cut(s)	200, 450, 574
NlaIII	CATG	7 cut(s)	394, 481, 497, 538, 592, 770, 829
NlaIV	GGNNCC	3 cut(s)	552, 553, 883
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	4 cut(s)	212, 319, 496, 869
NspI	RCATGY	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	101
PleI	GAGTC	2 cut(s)	451, 493
PpsI	GAGTC	2 cut(s)	451, 493
PpuMI	RGGWCCY	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	552, 553, 883
PspOMI	GGGCCC	1 cut(s)	550
PspPI	GGNCC	4 cut(s)	331, 550, 551, 891
PspPPI	RGGWCCY	1 cut(s)	331
PvuII	CAGCTG	2 cut(s)	598, 716
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	876
SacI	GAGCTC	1 cut(s)	401
Sau3AI	GATC	3 cut(s)	200, 450, 574
Sau96I	GGNCC	4 cut(s)	331, 550, 551, 891
SchI	GAGTC	2 cut(s)	452, 494
ScrFI	CCNGG	2 cut(s)	521, 690
SduI	GDGCHC	3 cut(s)	401, 554, 563
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	7 cut(s)	251, 335, 374, 579, 618, 729, 867
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	519, 688
StyI	CCWWGG	4 cut(s)	168, 373, 578, 801
TaqI	TCGA	2 cut(s)	432, 453
TfiI	GAWTC	1 cut(s)	101
TseFI	GTSAC	4 cut(s)	212, 319, 496, 869
Tsp45I	GTSAC	4 cut(s)	212, 319, 496, 869
TspDTI	ATGAA	5 cut(s)	93, 153, 210, 696, 842
VneI	GTGCAC	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	592
XmaJI	CCTAGG	2 cut(s)	373, 578
XspI	CTAG	7 cut(s)	251, 335, 374, 579, 618, 729, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.