AT1G09810

Evolutionarily conserved C-terminal region 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004199
Physical Location & Seq
Reverse (-)
3180926 .. 3184224
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09810.1

Sequence Viewer

Length: 1413 bp
ATGGCCACTGAAAAGAATACTCTGGATTCTGAGGCTACTTTTGCGCAAACAGTACCAGCTCTTGATTCTACAACAAAGAAACAGGATGAGTCTCCTCCAAAGAGTACCCCGTCTCTTACTGTCACTGCTTGTGCTAATGGATCTGATGTAGTATCTTCTCAGCCAAATGACAATGGCCAAGCACATACTACAGATTTTCGAAAGGGAAATCACCGTGACAAAAACAGCTCAGATGTCTATGCTGATTCGACTTTGCGTGGAGATCGACCAAAAGGAAGCAATTGTTTGTCTCAAACTTCTTTTTCGGCTCCTAAGCCTCTTGGAAATTTCAATGGTGCTGGTAGACTTCCTCCCAATACACAAGCACATGCATTCAGACCACCATTTAAGGGAAAGGAAGCCGCAGGACAGTTCTTAACATTCTCCAATCAGAAGACAAGCTGTGTCCCATATTCTGGTTACATTAATGGAAACTCAAATAATGGTTTCTGGGATCAAAGGGATCATAATAAGAAACCTGAGAGAAATGGAGAGTCTGACTACTTGGTTGAATTGAAATGTGGTCCGAGAGCCAATGCAAAGACTCGTCCTCCTTCCGAGTCGTCACCACTGAAGCAAAACAATTCGTTTGCCTTGGCTCTTCGTAGAGAGATGTATAACCTCCCTGACTTTCAGACTGACTATGAAGATGCCAAGTTTTTCGTAATCAAGTCGTACAGCGAAGATGATGTTCACAAGAGTATCAAATATTCTGTGTGGTCAAGCACTATCAACGGAAACAAGAAACTCGATGCAGCTTTCCGTGATGCTGAAACAAAAACACTCGAGGATGGCAAGAAACGTCCAATATTTCTCTTCTTCTCGGTGAATGCGAGTAGACAATTTGTGGGATTAGCTGAGATGGTTGGATATGTGGACTTCAACAAGGATTTGGATTTCTGGCAGGTTGATAAGTGGAGTGGCTTTTTCCCTGTTGAATGGCATGTGGTTAAAGATATTCCTAACTGGGAACTACGCCATATCATCCTCGACAACAATGAGGACAAGCCAGTTACTCATACGAGAGATACTCACGAGATCAAACTCAAAGAAGGTCTCCAAATGCTTTCGATATTCAAGAAGTACTCTGCGGTAACATTTTTGTTAGACGACATGGACTTCTACGAAGAGCGAGAGAAGTCTCTTCGAGCGAAGAAGGAGCATAAACCAGCCACTCTTCGCATGGATCTCTTCAAAGAGAAAGACTATGACTATGAGATGGAAGGCAACAGGAGAATGAATCACCAAGAAAGAGGATATAATTGGAACAGAAGTAGCAATAGCAAAACACAAGCATCTCTTGTCAATCAAACCAAGTATCTTTCCATAAGAGGCTACTCTGGTTACAAGAAGAACACTGGCAATTCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

470

Amino Acids

53.52

Weight (kDa)

8.79

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 231 - 373 5.5e-45 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 45
Acc36I ACCTGC 1 cut(s) 934
AccB7I CCANNNNNTGG 1 cut(s) 455
AccI GTMKAC 2 cut(s) 343, 877
AciI CCGC 2 cut(s) 402, 1130
AclWI GGATC 4 cut(s) 148, 501, 510, 1233
AcoI YGGCCR 2 cut(s) 3, 175
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 4 cut(s) 54, 106, 716, 1124
AfiI CCNNNNNNNGG 2 cut(s) 389, 455
AgsI TTSAA 8 cut(s) 331, 551, 556, 922, 977, 1117, 1234, 1407
AluBI AGCT 5 cut(s) 59, 228, 441, 797, 896
AluI AGCT 5 cut(s) 59, 228, 441, 797, 896
Alw26I GTCTC 5 cut(s) 96, 117, 294, 1100, 1185
AlwI GGATC 4 cut(s) 148, 501, 510, 1233
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 2 cut(s) 3, 175
ApeKI GCWGC 1 cut(s) 794
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 465
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 563
AsuHPI GGTGA 4 cut(s) 203, 597, 877, 1274
AsuII TTCGAA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 1 cut(s) 563
BaeI ACNNNNGTAYC 2 cut(s) 724, 757
BalI TGGCCA 2 cut(s) 5, 177
BauI CACGAG 1 cut(s) 1073
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 806
BccI CCATC 3 cut(s) 824, 895, 1252
BcoDI GTCTC 5 cut(s) 96, 117, 294, 1100, 1185
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 934
BisI GCNGC 2 cut(s) 402, 795
BlsI GCNGC 2 cut(s) 403, 796
BmcAI AGTACT 1 cut(s) 1124
Bme18I GGWCC 1 cut(s) 563
BmeT110I CYCGRG 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 1015
BmsI GCATC 4 cut(s) 679, 781, 796, 1343
BmuI ACTGGG 1 cut(s) 1015
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 1054, 1086
Bpu10I CCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 1100
BsaJI CCNNGG 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 455
Bse1I ACTGG 3 cut(s) 1010, 1049, 1402
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 3 cut(s) 91, 835, 1023
BseLI CCNNNNNNNGG 2 cut(s) 389, 455
BseMII CTCAG 5 cut(s) 21, 173, 243, 510, 888
BseNI ACTGG 3 cut(s) 1010, 1049, 1402
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 806
BshFI GGCC 2 cut(s) 5, 177
BsiHKCI CYCGRG 1 cut(s) 824
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 389, 455
BsmAI GTCTC 5 cut(s) 96, 117, 294, 1100, 1185
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 2 cut(s) 371, 874
BsnI GGCC 2 cut(s) 5, 177
Bso31I GGTCTC 1 cut(s) 1100
BsoBI CYCGRG 1 cut(s) 824
Bsp119I TTCGAA 1 cut(s) 199
Bsp143I GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
BspACI CCGC 2 cut(s) 402, 1130
BspANI GGCC 2 cut(s) 5, 177
BspCNI CTCAG 5 cut(s) 22, 172, 242, 511, 889
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 934
BspPI GGATC 4 cut(s) 148, 501, 510, 1233
BspQI GCTCTTC 2 cut(s) 645, 1161
BspT104I TTCGAA 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 1100
BsrI ACTGG 3 cut(s) 1010, 1049, 1402
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
BssSI CACGAG 1 cut(s) 1073
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 1073
Bst4CI ACNGT 4 cut(s) 52, 121, 215, 411
Bst6I CTCTTC 6 cut(s) 645, 860, 1161, 1188, 1221, 1235
BstBI TTCGAA 1 cut(s) 199
BstDEI CTNAG 6 cut(s) 30, 159, 229, 312, 519, 897
BstF5I GGATG 3 cut(s) 91, 835, 1023
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 6 cut(s) 143, 265, 496, 505, 1080, 1228
BstMAI GTCTC 5 cut(s) 96, 117, 294, 1100, 1185
BstMBI GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 371, 986
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 806
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 2 cut(s) 140, 1225
BstYI RGATCY 2 cut(s) 140, 1225
BsuRI GGCC 2 cut(s) 5, 177
BtsCI GGATG 3 cut(s) 91, 835, 1023
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 4 cut(s) 6, 123, 608, 1395
BveI ACCTGC 1 cut(s) 934
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 563
Csp6I GTAC 4 cut(s) 53, 105, 715, 1123
CviAII CATG 5 cut(s) 368, 983, 1153, 1222, 1410
CviQI GTAC 4 cut(s) 53, 105, 715, 1123
DdeI CTNAG 6 cut(s) 30, 159, 229, 312, 519, 897
DpnI GATC 6 cut(s) 142, 264, 495, 504, 1079, 1227
DpnII GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
EaeI YGGCCR 2 cut(s) 3, 175
Eam1104I CTCTTC 6 cut(s) 645, 860, 1161, 1188, 1221, 1235
EarI CTCTTC 6 cut(s) 645, 860, 1161, 1188, 1221, 1235
Eco130I CCWWGG 1 cut(s) 633
Eco31I GGTCTC 1 cut(s) 1100
Eco47I GGWCC 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 632
Eco88I CYCGRG 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 633
EcoT22I ATGCAT 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 633
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 5 cut(s) 371, 986, 1156, 1225, 1413
FalI AAGNNNNNCTT 2 cut(s) 1323, 1355
FaqI GGGAC 1 cut(s) 431
FatI CATG 5 cut(s) 367, 982, 1152, 1221, 1409
FblI GTMKAC 2 cut(s) 343, 877
Fnu4HI GCNGC 2 cut(s) 402, 795
FokI GGATG 3 cut(s) 98, 842, 1010
Fsp4HI GCNGC 2 cut(s) 402, 795
FspI TGCGCA 1 cut(s) 45
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 402, 795
HaeIII GGCC 2 cut(s) 5, 177
HhaI GCGC 1 cut(s) 46
Hin1II CATG 5 cut(s) 371, 986, 1156, 1225, 1413
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 8 cut(s) 26, 65, 89, 245, 533, 583, 599, 1279
HphI GGTGA 4 cut(s) 203, 597, 877, 1274
Hpy166II GTNNAC 4 cut(s) 344, 733, 878, 916
Hpy188I TCNGA 9 cut(s) 31, 145, 232, 377, 432, 538, 567, 598, 675
Hpy188III TCNNGA 4 cut(s) 23, 62, 1073, 1117
Hpy8I GTNNAC 4 cut(s) 344, 733, 878, 916
HpyAV CCTTC 4 cut(s) 603, 1085, 1189, 1256
HpyCH4III ACNGT 4 cut(s) 52, 121, 215, 411
HpyCH4IV ACGT 1 cut(s) 841
HpyCH4V TGCA 3 cut(s) 371, 578, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 6 cut(s) 30, 159, 229, 312, 519, 897
HpySE526I ACGT 1 cut(s) 841
Hsp92II CATG 5 cut(s) 371, 986, 1156, 1225, 1413
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
LguI GCTCTTC 2 cut(s) 645, 1161
LmnI GCTCC 2 cut(s) 313, 1198
Lsp1109I GCAGC 1 cut(s) 806
LweI GCATC 4 cut(s) 679, 781, 796, 1343
MaeII ACGT 1 cut(s) 841
MaeIII GTNAC 7 cut(s) 121, 215, 458, 603, 1051, 1132, 1382
MalI GATC 6 cut(s) 142, 264, 495, 504, 1079, 1227
MboI GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 2 cut(s) 140, 1225
MlsI TGGCCA 2 cut(s) 5, 177
MluCI AATT 7 cut(s) 280, 325, 551, 622, 881, 1300, 1402
MluNI TGGCCA 2 cut(s) 5, 177
MlyI GAGTC 4 cut(s) 98, 542, 577, 608
MmeI TCCRAC 1 cut(s) 886
Mox20I TGGCCA 2 cut(s) 5, 177
Mph1103I ATGCAT 1 cut(s) 373
MscI TGGCCA 2 cut(s) 5, 177
MseI TTAA 4 cut(s) 387, 416, 465, 990
Msp20I TGGCCA 2 cut(s) 5, 177
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 2 cut(s) 371, 874
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
NlaIII CATG 5 cut(s) 371, 986, 1156, 1225, 1413
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 3 cut(s) 121, 215, 603
NsbI TGCGCA 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 2 cut(s) 371, 986
NspV TTCGAA 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 824
PciSI GCTCTTC 2 cut(s) 645, 1161
PcsI WCGNNNNNNNCGW 1 cut(s) 869
PctI GAATGC 2 cut(s) 371, 874
PfeI GAWTC 4 cut(s) 26, 65, 245, 1279
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 2 cut(s) 403, 796
PleI GAGTC 4 cut(s) 97, 541, 577, 607
PpsI GAGTC 4 cut(s) 97, 541, 577, 607
PshBI ATTAAT 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 563
PspXI VCTCGAGB 1 cut(s) 824
PsuI RGATCY 2 cut(s) 140, 1225
RsaI GTAC 4 cut(s) 54, 106, 716, 1124
RsaNI GTAC 4 cut(s) 53, 105, 715, 1123
SapI GCTCTTC 2 cut(s) 645, 1161
SaqAI TTAA 4 cut(s) 387, 416, 465, 990
SatI GCNGC 2 cut(s) 402, 795
Sau3AI GATC 6 cut(s) 140, 262, 493, 502, 1077, 1225
Sau96I GGNCC 1 cut(s) 563
ScaI AGTACT 1 cut(s) 1124
SchI GAGTC 4 cut(s) 98, 542, 577, 608
SfaNI GCATC 4 cut(s) 679, 781, 796, 1343
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 824
SfuI TTCGAA 1 cut(s) 199
SinI GGWCC 1 cut(s) 563
SlaI CTCGAG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
Sse9I AATT 7 cut(s) 280, 325, 551, 622, 881, 1300, 1402
SsiI CCGC 2 cut(s) 402, 1130
SspI AATATT 2 cut(s) 749, 849
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 4 cut(s) 52, 121, 215, 411
TaiI ACGT 1 cut(s) 844
TaqI TCGA 8 cut(s) 199, 248, 265, 789, 825, 1029, 1109, 1186
TasI AATT 7 cut(s) 280, 325, 551, 622, 881, 1300, 1402
TatI WGTACW 1 cut(s) 1122
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 4 cut(s) 26, 65, 245, 1279
Tru1I TTAA 4 cut(s) 387, 416, 465, 990
Tru9I TTAA 4 cut(s) 387, 416, 465, 990
TscAI CASTG 4 cut(s) 13, 130, 615, 1402
TseFI GTSAC 3 cut(s) 121, 215, 603
TseI GCWGC 1 cut(s) 794
Tsp45I GTSAC 3 cut(s) 121, 215, 603
TspDTI ATGAA 2 cut(s) 699, 1292
TspGWI ACGGA 2 cut(s) 789, 791
TspRI CASTG 4 cut(s) 13, 130, 615, 1402
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 563
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 371, 986
XcmI CCANNNNNNNNNTGG 1 cut(s) 1219
XhoI CTCGAG 1 cut(s) 824
XmiI GTMKAC 2 cut(s) 343, 877
ZrmI AGTACT 1 cut(s) 1124
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.