Rmu_sc0000307.1_g000004

YT521-B-like domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000307.1
Physical Location & Seq
Forward (+)
26507 .. 31805
5299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000307.1_g000004.1.cds

Sequence Viewer

Length: 1614 bp
atggccggcgaaaagaagattgagaaagctgagcctgtagccactgtgttggcatcagattctgtttccggattaggagagcaacaactggtttctgggaaagatggaataccatatgattcgatctcctccatgtcttcttcgagggatgccaccgacagcatgaaaggatataatggatcgtatacgcagatggacgaacatcgctatgcaaatgctaataattcacaggcgggtgtgcagtcagacaatggttcaatggtctattatctccccggctataatccatatgcccctggaactcttatgggtgttgatggccaaggtgttggtcaacagcagtatttttcttcctcaggttatatgcagccacctgtttcgtatggttctgaagctatgccctgttattcatgggacacaacatattctggtgatatctctacagcaacaaactctggttttggaaatctaaagtctggaccaggtggtactgctttatctaggtcaagtggctttacgtcaggcaaaacaaatggaaatcttgctagcaaattttccaagtctttcccttctacacaacccatcaaatcattaaacaaggtgcctcatttaggttctgatttctcagccagtcttttgaagggatacccctcaactggaaggttctcatcattcactaaccagaagggtctgtttcctcttaatggtcaaacaaactacaaatctaatgggaggatattaaatggaaatgacagattcaagtcaagggaaaaatataacagaaatgaggattttgaatcctcaactgagttgacacgtggtccaagatctcgcaacaagatttctccttcagactcatcagtggagaaggaagtattgggatttacagtcagtagagataaatacaacctaccagattttcagactgattatgaaagtgcgaagttctatgtcattaagtcttacagtgaagatgatgtccataagagcattaaatatgatgtttgggccagcactccgaatggcaataagaaactggatgtagcatttcgtgatgctgaagcaaaatcgagtgagacaggcacacggtgtcctatattcctatttttctcggtgaatggaagtgggcagttcgtaggcctggccgagatgattggggaggtagatttcaacaaagatatggacttctggcaagttgacaagtggagtgggttcttcccagttaaatggcatataataaaggacatacctaacactcagttgcggcatattatccttgaaaacaatgataacagacctgtaacttttacccgggacactcaagagattggactgaagcaaggtttggaaatgctgaacatattcaaaacttatgcacccagatcatctttgttagatgacttcaatttctatgaaaatcgagaaaagtctctacaagccaaaaggagcggtaaacctgcaactttaaagattgaaacttacgatgatggtgttatccctgagcatatgagtgctgtaggggaagaccttgaagctgaatcaggtgggatcgggatgacttctgaccgaacatctctcatttcacttactaaaaatctctctctcaatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

59.07

Weight (kDa)

5.85

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1465
AccB1I GGYRCC 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 1449
AccI GTMKAC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 3 cut(s) 233, 1264, 1449
AclWI GGATC 2 cut(s) 187, 1556
AcoI YGGCCR 3 cut(s) 3, 319, 1143
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 4 cut(s) 411, 834, 1080, 1355
AcvI CACGTG 1 cut(s) 818
AdeI CACNNNGTG 1 cut(s) 1089
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 3 cut(s) 611, 656, 704
AflIII ACRYGT 1 cut(s) 815
AhdI GACNNNNNGTC 1 cut(s) 819
AjnI CCWGG 3 cut(s) 295, 481, 1140
AjuI GAANNNNNNNTTGG 4 cut(s) 860, 892, 1328, 1360
AluBI AGCT 3 cut(s) 29, 395, 1535
AluI AGCT 3 cut(s) 29, 395, 1535
Alw26I GTCTC 2 cut(s) 1070, 1434
AlwI GGATC 2 cut(s) 187, 1556
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 1311
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 5 cut(s) 3, 319, 1008, 1138, 1143
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 1361
AspS9I GGNCC 3 cut(s) 479, 821, 1008
AsuC2I CCSGG 3 cut(s) 276, 1312, 1313
AsuHPI GGTGA 2 cut(s) 443, 1126
AsuNHI GCTAGC 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 1311
AvaII GGWCC 2 cut(s) 479, 821
AxyI CCTNAGG 1 cut(s) 355
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 601
BbrPI CACGTG 1 cut(s) 818
BbsI GAAGAC 2 cut(s) 129, 1530
BbvI GCAGC 1 cut(s) 379
BccI CCATC 5 cut(s) 98, 187, 311, 590, 1481
BciT130I CCWGG 3 cut(s) 297, 483, 1142
BciVI GTATCC 1 cut(s) 638
BcnI CCSGG 3 cut(s) 276, 1312, 1313
BcoDI GTCTC 2 cut(s) 1070, 1434
BfaI CTAG 2 cut(s) 501, 546
BfmI CTRYAG 3 cut(s) 36, 441, 1515
BfuAI ACCTGC 1 cut(s) 1465
BfuI GTATCC 1 cut(s) 638
BglII AGATCT 1 cut(s) 827
BisI GCNGC 2 cut(s) 368, 1265
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 369, 1266
Bme1390I CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
Bme18I GGWCC 2 cut(s) 479, 821
BmeRI GACNNNNNGTC 1 cut(s) 819
BmeT110I CYCGRG 1 cut(s) 1311
BmgT120I GGNCC 3 cut(s) 479, 821, 1008
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
BmrI ACTGGG 1 cut(s) 1214
BmsI GCATC 3 cut(s) 62, 139, 1045
BmtI GCTAGC 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 1214
BpiI GAAGAC 2 cut(s) 129, 1530
Bpu10I CCTNAGC 1 cut(s) 1500
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 1305
BpuMI CCSGG 3 cut(s) 276, 1312, 1313
BsaAI YACGTR 1 cut(s) 818
BsaJI CCNNGG 4 cut(s) 274, 295, 322, 1311
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 611, 656, 704
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 5 cut(s) 93, 630, 661, 1041, 1220
Bse21I CCTNAGG 1 cut(s) 355
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 3 cut(s) 297, 483, 1142
BseDI CCNNGG 4 cut(s) 274, 295, 322, 1311
BseGI GGATG 3 cut(s) 154, 1045, 1560
BseLI CCNNNNNNNGG 3 cut(s) 611, 656, 704
BseMII CTCAG 6 cut(s) 21, 369, 639, 798, 1271, 1491
BseNI ACTGG 5 cut(s) 93, 630, 661, 1041, 1220
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 5 cut(s) 5, 321, 1010, 1140, 1145
BshNI GGYRCC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 1311
BsiSI CCGG 4 cut(s) 6, 69, 276, 1312
BslFI GGGAC 2 cut(s) 428, 1328
BslI CCNNNNNNNGG 3 cut(s) 611, 656, 704
BsmAI GTCTC 2 cut(s) 1070, 1434
BsmFI GGGAC 2 cut(s) 428, 1328
BsnI GGCC 5 cut(s) 5, 321, 1010, 1140, 1145
BsoBI CYCGRG 1 cut(s) 1311
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 5 cut(s) 123, 179, 827, 1382, 1548
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 3 cut(s) 233, 1264, 1449
BspANI GGCC 5 cut(s) 5, 321, 1010, 1140, 1145
BspCNI CTCAG 6 cut(s) 22, 368, 638, 799, 1270, 1492
BspEI TCCGGA 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 603
BspMI ACCTGC 1 cut(s) 1465
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 2 cut(s) 187, 1556
BspT107I GGYRCC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 1449
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 5 cut(s) 93, 630, 661, 1041, 1220
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 4 cut(s) 274, 295, 322, 1311
BssMI GATC 5 cut(s) 123, 179, 827, 1382, 1548
BssNAI GTATAC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 322
Bst1107I GTATAC 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 297, 483, 1142
Bst4CI ACNGT 4 cut(s) 46, 889, 968, 1089
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 3 cut(s) 7, 547, 1012
BstDEI CTNAG 6 cut(s) 30, 355, 625, 807, 1257, 1500
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 3 cut(s) 154, 1045, 1560
BstKTI GATC 5 cut(s) 126, 182, 830, 1385, 1551
BstMAI GTCTC 2 cut(s) 1070, 1434
BstMBI GATC 5 cut(s) 123, 179, 827, 1382, 1548
BstNI CCWGG 3 cut(s) 297, 483, 1142
BstSCI CCNGG 6 cut(s) 274, 295, 481, 1140, 1310, 1311
BstSFI CTRYAG 3 cut(s) 36, 441, 1515
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 2 cut(s) 129, 1530
BstX2I RGATCY 1 cut(s) 827
BstXI CCANNNNNNTGG 3 cut(s) 49, 329, 1227
BstYI RGATCY 1 cut(s) 827
BstZ17I GTATAC 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 355
BsuI GTATCC 1 cut(s) 638
BsuRI GGCC 5 cut(s) 5, 321, 1010, 1140, 1145
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 3 cut(s) 154, 1045, 1560
BtsIMutI CAGTG 3 cut(s) 42, 867, 973
BveI ACCTGC 1 cut(s) 1465
Cac8I GCNNGC 3 cut(s) 7, 547, 1012
CaiI CAGNNNCTG 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 3 cut(s) 479, 821, 1008
Cfr9I CCCGGG 1 cut(s) 1311
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 1 cut(s) 489
CspCI CAANNNNNGTGG 2 cut(s) 1189, 1224
CviAII CATG 3 cut(s) 133, 163, 411
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 6 cut(s) 30, 355, 625, 807, 1257, 1500
DpnI GATC 5 cut(s) 125, 181, 829, 1384, 1550
DpnII GATC 5 cut(s) 123, 179, 827, 1382, 1548
DraI TTTAAA 1 cut(s) 1467
DraIII CACNNNGTG 1 cut(s) 1089
DriI GACNNNNNGTC 1 cut(s) 819
EaeI YGGCCR 3 cut(s) 3, 319, 1143
Eam1105I GACNNNNNGTC 1 cut(s) 819
Eco130I CCWWGG 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 1140
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 479, 821
Eco57I CTGAAG 4 cut(s) 411, 834, 1080, 1355
Eco72I CACGTG 1 cut(s) 818
Eco81I CCTNAGG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 1311
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoRII CCWGG 3 cut(s) 295, 481, 1140
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 3 cut(s) 136, 166, 414
FaqI GGGAC 2 cut(s) 428, 1328
FatI CATG 3 cut(s) 132, 162, 410
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 3 cut(s) 115, 289, 1506
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 368, 1265
FokI GGATG 3 cut(s) 161, 1052, 1567
Fsp4HI GCNGC 2 cut(s) 368, 1265
FspBI CTAG 2 cut(s) 501, 546
GluI GCNGC 2 cut(s) 368, 1265
HaeIII GGCC 5 cut(s) 5, 321, 1010, 1140, 1145
HapII CCGG 4 cut(s) 6, 69, 276, 1312
Hin1II CATG 3 cut(s) 136, 166, 414
HincII GTYRAC 3 cut(s) 335, 813, 1198
HindII GTYRAC 3 cut(s) 335, 813, 1198
HinfI GANTC 6 cut(s) 59, 119, 756, 797, 854, 1538
HpaII CCGG 4 cut(s) 6, 69, 276, 1312
HphI GGTGA 2 cut(s) 443, 1126
Hpy166II GTNNAC 5 cut(s) 186, 335, 813, 1198, 1454
Hpy188I TCNGA 8 cut(s) 58, 247, 391, 619, 853, 924, 1020, 1564
Hpy188III TCNNGA 6 cut(s) 69, 477, 1052, 1322, 1421, 1552
Hpy8I GTNNAC 5 cut(s) 186, 335, 813, 1198, 1454
HpyAV CCTTC 6 cut(s) 579, 634, 654, 679, 858, 862
HpyCH4III ACNGT 4 cut(s) 46, 889, 968, 1089
HpyCH4IV ACGT 2 cut(s) 518, 817
HpyCH4V TGCA 5 cut(s) 212, 241, 367, 1376, 1460
HpyF3I CTNAG 6 cut(s) 30, 355, 625, 807, 1257, 1500
HpySE526I ACGT 2 cut(s) 518, 817
Hsp92II CATG 3 cut(s) 136, 166, 414
Kpn2I TCCGGA 1 cut(s) 68
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 5 cut(s) 123, 179, 827, 1382, 1548
LmnI GCTCC 1 cut(s) 1446
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 3 cut(s) 62, 139, 1045
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 2 cut(s) 501, 546
MaeII ACGT 2 cut(s) 518, 817
MaeIII GTNAC 1 cut(s) 1300
MalI GATC 5 cut(s) 125, 181, 829, 1384, 1550
MbiI CCGCTC 1 cut(s) 1449
MboI GATC 5 cut(s) 123, 179, 827, 1382, 1548
MboII GAAGA 7 cut(s) 28, 129, 132, 342, 983, 1207, 1535
MflI RGATCY 1 cut(s) 827
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 3 cut(s) 223, 551, 1405
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 848
Mox20I TGGCCA 1 cut(s) 321
MroI TCCGGA 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1361
MscI TGGCCA 1 cut(s) 321
MseI TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
MslI CAYNNNNRTG 2 cut(s) 207, 1509
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 4 cut(s) 6, 69, 276, 1312
MspR9I CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
MvaI CCWGG 3 cut(s) 297, 483, 1142
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 3 cut(s) 276, 1312, 1313
NdeI CATATG 3 cut(s) 115, 289, 1506
NdeII GATC 5 cut(s) 123, 179, 827, 1382, 1548
NgoMIV GCCGGC 1 cut(s) 5
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 3 cut(s) 136, 166, 414
NlaIV GGNNCC 1 cut(s) 603
NmeAIII GCCGAG 1 cut(s) 1171
PceI AGGCCT 1 cut(s) 1140
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 1361
PfeI GAWTC 5 cut(s) 59, 119, 756, 797, 1538
PkrI GCNGC 2 cut(s) 369, 1266
PleI GAGTC 1 cut(s) 848
PmaCI CACGTG 1 cut(s) 818
PmlI CACGTG 1 cut(s) 818
PpsI GAGTC 1 cut(s) 848
Ppu21I YACGTR 1 cut(s) 818
Psp6I CCWGG 3 cut(s) 295, 481, 1140
PspCI CACGTG 1 cut(s) 818
PspGI CCWGG 3 cut(s) 295, 481, 1140
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 3 cut(s) 479, 821, 1008
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 827
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
RseI CAYNNNNRTG 2 cut(s) 207, 1509
SaqAI TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
SatI GCNGC 2 cut(s) 368, 1265
Sau3AI GATC 5 cut(s) 123, 179, 827, 1382, 1548
Sau96I GGNCC 3 cut(s) 479, 821, 1008
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 3 cut(s) 62, 139, 1045
SfcI CTRYAG 3 cut(s) 36, 441, 1515
SinI GGWCC 2 cut(s) 479, 821
SmaI CCCGGG 1 cut(s) 1313
SmiMI CAYNNNNRTG 2 cut(s) 207, 1509
SmlI CTYRAG 1 cut(s) 1320
SmoI CTYRAG 1 cut(s) 1320
Sse9I AATT 3 cut(s) 223, 551, 1405
SseBI AGGCCT 1 cut(s) 1140
SsiI CCGC 3 cut(s) 233, 1264, 1449
SspMI CTAG 2 cut(s) 501, 546
StuI AGGCCT 1 cut(s) 1140
StyD4I CCNGG 6 cut(s) 274, 295, 481, 1140, 1310, 1311
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 4 cut(s) 46, 889, 968, 1089
TaiI ACGT 2 cut(s) 521, 820
TaqI TCGA 4 cut(s) 122, 143, 1070, 1420
TaqII GACCGA 1 cut(s) 1581
TasI AATT 3 cut(s) 223, 551, 1405
TauI GCSGC 1 cut(s) 1267
TfiI GAWTC 5 cut(s) 59, 119, 756, 797, 1538
Tru1I TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
Tru9I TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
TscAI CASTG 3 cut(s) 49, 867, 973
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 4 cut(s) 179, 399, 948, 1428
TspMI CCCGGG 1 cut(s) 1311
TspRI CASTG 3 cut(s) 49, 867, 973
VpaK11BI GGWCC 2 cut(s) 479, 821
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 1 cut(s) 551
XmaI CCCGGG 1 cut(s) 1311
XmiI GTMKAC 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 1361
XspI CTAG 2 cut(s) 501, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.