Rorug07G0226600

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
20671339 .. 20672564
1226 bp
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UTR
Exon/CDS
Intron
Rorug07G0226600.1

Sequence Viewer

Length: 528 bp
ATGGTGCTTGGCAATAACTTCATTCGCGAAACTCACTATGACATACTATCTGTGAAGGAAGATGCAAGCTATGAAGATATCCGAACAAGCTACAGATCTGCCATCCTTAATAGTCATCCTGATAAACTACAACCTACATCCGAGTCAGCAGATAGATTCTTGAAGGTGCAAAAGGCTTGGGATATCCTCAGTGATTCGAGGTCTCGTGCACTTTATGACAATATGCTAATAGCTTCTAGACATGACACTTTTGTAGCCGATGATATCAGCTTGGAAGACGTGATGGCTGAAGATGCAGGAGACGTCATTCAGCTATTTTACCAGTGTCGATGTGGTGATTACTACTTTGTTGATTCTTCGGAGTTGGAGAAAATGGGGTATGCTTTGGTAAGAGATGGTAGCAAGCTATGTTTTGAGGCACAAAATGCTTTGCCAGCATCACTAGTCCTTCCTTGCGGGTCTTGTTCTTTGAAAGTTCGTATATTGATCAATCCAGACGATTTTGTTTCTATTGATCATCGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

19.85

Weight (kDa)

4.76

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 73 2.3e-18 DnaJ domain
Zn_ribbon_CSL PF05207 87 - 162 2.3e-09 CSL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 303
AgsI TTSAA 2 cut(s) 163, 472
AhlI ACTAGT 1 cut(s) 442
AjiI CACGTC 1 cut(s) 280
AluBI AGCT 6 cut(s) 69, 90, 233, 270, 313, 406
AluI AGCT 6 cut(s) 69, 90, 233, 270, 313, 406
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 2 cut(s) 207, 294
Alw44I GTGCAC 1 cut(s) 207
ApaLI GTGCAC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 211
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 211
BccI CCATC 3 cut(s) 110, 277, 389
BclI TGATCA 2 cut(s) 486, 514
BcoDI GTCTC 2 cut(s) 207, 294
BcuI ACTAGT 1 cut(s) 442
BfaI CTAG 2 cut(s) 237, 443
BfmI CTRYAG 1 cut(s) 91
BglII AGATCT 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 280
BmsI GCATC 3 cut(s) 52, 283, 446
BpiI GAAGAC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 322
BseGI GGATG 3 cut(s) 102, 115, 137
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 207, 294
BsmBI CGTCTC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 95, 486, 514
Bsp68I TCGCGA 1 cut(s) 27
BspACI CCGC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 322
BssMI GATC 3 cut(s) 95, 486, 514
BssNI GRCGYC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 67, 404, 435
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 3 cut(s) 102, 115, 137
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 98, 489, 517
BstMAI GTCTC 2 cut(s) 207, 294
BstMBI GATC 3 cut(s) 95, 486, 514
BstMWI GCNNNNNNNGC 3 cut(s) 293, 425, 434
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 3 cut(s) 102, 115, 137
BtsIMutI CAGTG 3 cut(s) 196, 329, 523
BtuMI TCGCGA 1 cut(s) 27
Cac8I GCNNGC 3 cut(s) 67, 404, 435
CviAII CATG 1 cut(s) 242
CviJI RGCY 9 cut(s) 69, 90, 176, 233, 257, 270, 287, 313, 406
CviKI_1 RGCY 9 cut(s) 69, 90, 176, 233, 257, 270, 287, 313, 406
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 97, 488, 516
DpnII GATC 3 cut(s) 95, 486, 514
Eco31I GGTCTC 1 cut(s) 207
Eco32I GATATC 3 cut(s) 79, 184, 265
Eco57I CTGAAG 1 cut(s) 309
EcoRV GATATC 3 cut(s) 79, 184, 265
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 1 cut(s) 245
FaiI YATR 9 cut(s) 39, 44, 72, 216, 224, 243, 381, 409, 482
FatI CATG 1 cut(s) 241
FauI CCCGC 1 cut(s) 449
FbaI TGATCA 2 cut(s) 486, 514
FokI GGATG 3 cut(s) 89, 102, 124
FspBI CTAG 2 cut(s) 237, 443
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 245
HinfI GANTC 4 cut(s) 143, 156, 194, 353
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 3 cut(s) 83, 142, 361
Hpy188III TCNNGA 5 cut(s) 26, 119, 160, 237, 494
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 49, 157, 458
HpyCH4IV ACGT 2 cut(s) 279, 303
HpyCH4V TGCA 4 cut(s) 65, 169, 209, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 425, 434
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 279, 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 245
Ksp22I TGATCA 2 cut(s) 486, 514
Kzo9I GATC 3 cut(s) 95, 486, 514
LpnPI CCDG 5 cut(s) 132, 282, 335, 447, 507
LweI GCATC 3 cut(s) 52, 283, 446
MaeI CTAG 2 cut(s) 237, 443
MaeII ACGT 2 cut(s) 279, 303
MaeIII GTNAC 1 cut(s) 521
MalI GATC 3 cut(s) 97, 488, 516
MboI GATC 3 cut(s) 95, 486, 514
MboII GAAGA 5 cut(s) 71, 86, 287, 302, 348
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 211
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 3 cut(s) 192, 197, 409
MseI TTAA 1 cut(s) 108
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 293, 425, 434
NdeII GATC 3 cut(s) 95, 486, 514
NlaIII CATG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 521
NruI TCGCGA 1 cut(s) 27
PfeI GAWTC 3 cut(s) 156, 194, 353
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PsuI RGATCY 1 cut(s) 95
RruI TCGCGA 1 cut(s) 27
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 3 cut(s) 95, 486, 514
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 211
SfaNI GCATC 3 cut(s) 52, 283, 446
SfcI CTRYAG 1 cut(s) 91
SpeI ACTAGT 1 cut(s) 442
SsiI CCGC 1 cut(s) 456
SspMI CTAG 2 cut(s) 237, 443
TaiI ACGT 2 cut(s) 282, 306
TaqI TCGA 2 cut(s) 197, 328
TfiI GAWTC 3 cut(s) 156, 194, 353
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 196, 329
TseFI GTSAC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 2 cut(s) 10, 87
TspRI CASTG 2 cut(s) 196, 329
VneI GTGCAC 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XspI CTAG 2 cut(s) 237, 443
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.