Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

51178056 .. 51188863

Gene Structure 10808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG249400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGTATGAAATTCAAATCCGTTGATGAAGCAGAGAAACTTTCTTCAAATTACTTGCTTGCTATGGGCTTTGGCTATAGATTGGATAGTTTGGGACTTGGCCCAGGTGATCGCATAACAAGCAGACAATTCTTATGCTTTGAGGCAGGGGTGAGAGCAGAGAAGTGGTTACGGATAAAGGATAGGGTCCGTAGTCCAAAAAGAGTCACTCGAGAAGGTTGCAAGACAAAGTTCCAATACTACAGAGACGAGACGGTGCTGCCAGGATTTGAAGGTGCAAAGTCGACGCTGCGAGCAAAGCCGACGCTGCTACAATATGAGAAGGCTTGCTATTGGGATTTGAGAGCGCAAGGCCTGCATCGGAGGCGTTGCCCGGCATGGTCATCGGGACGCTGCCCGGCATGGTCATCGGAGGTGCTGCTCCGGCATGAATCAAAAGTGGCCGATCCTATAATCAACTACTACAATCCCGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE

Protein Analysis

159

Amino Acids

18.38

Weight (kDa)

9.62

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	440
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	16, 48, 272
AjnI	CCWGG	2 cut(s)	103, 262
Alw26I	GTCTC	2 cut(s)	240, 245
AlwI	GGATC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	3 cut(s)	100, 352, 441
ApeKI	GCWGC	5 cut(s)	259, 289, 307, 393, 418
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	101, 187
AsuC2I	CCSGG	2 cut(s)	374, 398
AsuHPI	GGTGA	2 cut(s)	119, 163
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	187
BbvI	GCAGC	5 cut(s)	246, 276, 294, 380, 405
BcgI	CGANNNNNNTGC	6 cut(s)	201, 235, 366, 390, 400, 424
BciT130I	CCWGG	2 cut(s)	105, 264
BcnI	CCSGG	2 cut(s)	374, 398
BcoDI	GTCTC	2 cut(s)	240, 245
BfmI	CTRYAG	2 cut(s)	76, 241
BisI	GCNGC	5 cut(s)	260, 290, 308, 394, 419
BlsI	GCNGC	5 cut(s)	261, 291, 309, 395, 420
Bme1390I	CCNGG	4 cut(s)	105, 264, 374, 398
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	101, 187
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	4 cut(s)	105, 264, 374, 398
BmsI	GCATC	1 cut(s)	367
BpuMI	CCSGG	2 cut(s)	374, 398
BsaJI	CCNNGG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	105, 264
BseDI	CCNNGG	1 cut(s)	103
BseXI	GCAGC	5 cut(s)	246, 276, 294, 380, 405
BshFI	GGCC	3 cut(s)	102, 354, 443
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	374, 398, 424
BslFI	GGGAC	2 cut(s)	108, 402
BsmAI	GTCTC	2 cut(s)	240, 245
BsmBI	CGTCTC	2 cut(s)	240, 245
BsmFI	GGGAC	2 cut(s)	108, 402
BsnI	GGCC	3 cut(s)	102, 354, 443
BsoBI	CYCGRG	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	109, 445
BspANI	GGCC	3 cut(s)	102, 354, 443
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	109, 445
Bst2UI	CCWGG	2 cut(s)	105, 264
Bst4CI	ACNGT	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	4 cut(s)	60, 294, 328, 356
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	112, 448
BstMAI	GTCTC	2 cut(s)	240, 245
BstMBI	GATC	2 cut(s)	109, 445
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 298, 307, 355, 364, 424
BstNI	CCWGG	2 cut(s)	105, 264
BstSCI	CCNGG	4 cut(s)	103, 262, 372, 396
BstSFI	CTRYAG	2 cut(s)	76, 241
BstV1I	GCAGC	5 cut(s)	246, 276, 294, 380, 405
BsuRI	GGCC	3 cut(s)	102, 354, 443
Cac8I	GCNNGC	4 cut(s)	60, 294, 328, 356
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	101, 187
CseI	GACGC	3 cut(s)	295, 313, 399
CviAII	CATG	3 cut(s)	378, 402, 428
CviJI	RGCY	7 cut(s)	69, 75, 102, 301, 326, 354, 443
CviKI_1	RGCY	7 cut(s)	69, 75, 102, 301, 326, 354, 443
DpnI	GATC	2 cut(s)	111, 447
DpnII	GATC	2 cut(s)	109, 445
EaeI	YGGCCR	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	103, 262
Esp3I	CGTCTC	2 cut(s)	240, 245
FaeI	CATG	3 cut(s)	381, 405, 431
FaqI	GGGAC	2 cut(s)	108, 402
FatI	CATG	3 cut(s)	377, 401, 427
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	5 cut(s)	260, 290, 308, 394, 419
Fsp4HI	GCNGC	5 cut(s)	260, 290, 308, 394, 419
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	5 cut(s)	260, 290, 308, 394, 419
HaeIII	GGCC	3 cut(s)	102, 354, 443
HapII	CCGG	3 cut(s)	374, 398, 424
HgaI	GACGC	3 cut(s)	295, 313, 399
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	381, 405, 431
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	204, 431, 473
HpaII	CCGG	3 cut(s)	374, 398, 424
HphI	GGTGA	2 cut(s)	119, 163
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	363, 412
Hpy188III	TCNNGA	3 cut(s)	212, 387, 470
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	2 cut(s)	289, 307
HpyAV	CCTTC	3 cut(s)	209, 266, 316
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	222, 278, 358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 298, 307, 355, 364, 424
Hsp92II	CATG	3 cut(s)	381, 405, 431
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	109, 445
LmnI	GCTCC	1 cut(s)	426
LpnPI	CCDG	9 cut(s)	90, 117, 132, 249, 276, 368, 387, 411, 437
Lsp1109I	GCAGC	5 cut(s)	246, 276, 294, 380, 405
LweI	GCATC	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	168, 205
MalI	GATC	2 cut(s)	111, 447
MboI	GATC	2 cut(s)	109, 445
MboII	GAAGA	1 cut(s)	36
MluCI	AATT	3 cut(s)	11, 49, 128
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	136, 357, 406
MspI	CCGG	3 cut(s)	374, 398, 424
MspR9I	CCNGG	4 cut(s)	105, 264, 374, 398
MvaI	CCWGG	2 cut(s)	105, 264
MwoI	GCNNNNNNNGC	6 cut(s)	120, 298, 307, 355, 364, 424
NciI	CCSGG	2 cut(s)	374, 398
NdeII	GATC	2 cut(s)	109, 445
NlaIII	CATG	3 cut(s)	381, 405, 431
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	431, 473
PkrI	GCNGC	5 cut(s)	261, 291, 309, 395, 420
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	103, 262
PspGI	CCWGG	2 cut(s)	103, 262
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	101, 187
SalI	GTCGAC	1 cut(s)	283
SatI	GCNGC	5 cut(s)	260, 290, 308, 394, 419
Sau3AI	GATC	2 cut(s)	109, 445
Sau96I	GGNCC	2 cut(s)	101, 187
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	4 cut(s)	105, 264, 374, 398
SetI	ASST	4 cut(s)	109, 220, 277, 417
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	2 cut(s)	76, 241
Sfr274I	CTCGAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	11, 49, 128
SseBI	AGGCCT	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	4 cut(s)	103, 262, 372, 396
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	211, 284
TasI	AATT	3 cut(s)	11, 49, 128
TfiI	GAWTC	2 cut(s)	431, 473
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	5 cut(s)	259, 289, 307, 393, 418
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	23, 42, 444
TspGWI	ACGGA	3 cut(s)	10, 179, 187
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	11
XhoI	CTCGAG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.