Rroxscaffold_2G00124800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001462
Physical Location & Seq
Reverse (-)
59244686 .. 59249776
5091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124800.1

Sequence Viewer

Length: 1644 bp
ATGTCATCTCCCATCACCCATGATCATGGTCAAGCAATGGCCCGCTCGGCACAACCCCTTCTTCTTCCCACCAACCATGATCAAATTGAGTCTAGAACACCGAAAGGCATCGCCGGAAAGCATGCTTTCACGATTGGTAAGCACGCATGGAGGAAGCCGTGCGCCAAGGTAACGACGGCGAGGGCAGTGCCGAAAAGTTACTCCATCGATGATGGAGGAAGGTACAGAGAGGCCAAGAGCGGCGCTCTCCCAACCCTAGCGAGCGCTAGACCGACTGGAAAATCTGGAAAGAAAGGAAGTGACAGACAATCTTCACCGGAAAAACGCAGGCAACTTTCCGTCTCCTCATCAGCTCTTATCGGCCACCGCACTTCGGCGGCGCGTGAACTGGTTCAGATAGTTTCAGATTGCCTGAATAAACATACTGGCATGTTTATTCAATATTCATGCACCCTTTATGTGCTTTTAAGTGATTTTGAATTTCATGTTCAGTTGCAGAAGAACTTGGTTAGTCAGATGCTTAGTTTGCTGACCTCGATTTTTGATTTTCAAATAGGCTTTTCAGACATCTTGGTTTATCCAAGCATGAACTTTGAGCATCCCAGTTCGAGTGATTGCCGATACACAGAGGTCCAATCTGCTGATCAGGACTCCGCTGAACCACAACAGGAAGAGAAGGATGTAGAAGGAAGAGAATTCGCCACTCTGGATGATGCCGAAAATTGGTATAGAATGTATGCAACTGCACTTGGTTTTATGACAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCACGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGGTAAAAGAGAAGCAAAGTGGCTGCAAAAAGAGGACCGCGTTCGTAATGCTAAGCAAGAGACCCGATGCAACTGCCTAGCAGCATGCTACATGGGACACCTCGGTGCAAGGCGCACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTACACGGTGAAAAGCAATGAGGGGTTTGAGTTTGTGGGAGACACTGAGAAGGATCTTTTCAACAAGATAGAGGCAGAGCCAAGGGCCAAATTGTTTAATCAGGGGGAAGAAACTGCACCAATAGTGGAGGTGAGTGACATTACAATGCCACCTTGGAGCATTAACCTAGTAGGGTTCGGCGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTTATAGCTATGTATCATTGTCACCACATGTTAAAGCGGTTAGTGCCGACACAGCGTCAACATTACTTCGGCAGATTGCTGGTCTGACATCAATAGCAACAGAGCAGTCTTTAAAGGCGCGTGATGAGATTTTGCGCCTGAAGAGGGACAGTGAGCTGGCACTCAAGACAAAGGAAGCTGAAGCTGCGGTGCTGAAGAGGGAATTAGCTGAGTGTCGGCGAGAGTTGGAATTGGTGAAATCGGCAGATAAATATAGGTACAGAACCATCGAAGAGGTTGGCAGGAATTCTCAAAAGCAGATTACAGAGGATAACTGCAATAGGGGTCAATCTCCAGAGGGTGGTGCTGATATTCAACTTTTATGCTCACTGGGTGGGTGGAAAAGTGGCTTTGCCCCAGACAAAGATATGGAATTTGATTCAAGTAAGCGCAAGAGGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

547

Amino Acids

61.2

Weight (kDa)

8.72

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 242 - 306 1.3e-09 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1541
AccBSI CCGCTC 2 cut(s) 45, 240
AccII CGCG 3 cut(s) 382, 870, 1321
AciI CCGC 8 cut(s) 43, 240, 367, 377, 654, 868, 1238, 1388
AclWI GGATC 1 cut(s) 1038
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 4 cut(s) 479, 695, 1486, 1613
AcuI CTGAAG 3 cut(s) 1361, 1401, 1415
AdeI CACNNNGTG 1 cut(s) 1574
AfaI GTAC 2 cut(s) 224, 1460
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 4 cut(s) 373, 723, 1345, 1541
AflIII ACRYGT 1 cut(s) 1228
AgsI TTSAA 6 cut(s) 440, 479, 551, 1039, 1556, 1623
AhdI GACNNNNNGTC 1 cut(s) 1255
AleI CACNNNNGTG 1 cut(s) 933
AluBI AGCT 6 cut(s) 353, 1209, 1357, 1379, 1385, 1409
AluI AGCT 6 cut(s) 353, 1209, 1357, 1379, 1385, 1409
Alw26I GTCTC 3 cut(s) 346, 884, 1011
AlwI GGATC 1 cut(s) 1038
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 4 cut(s) 39, 231, 361, 1062
ApeKI GCWGC 3 cut(s) 853, 911, 1385
ApoI RAATTY 4 cut(s) 479, 695, 1486, 1613
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 8 cut(s) 164, 245, 266, 382, 945, 1321, 1338, 1632
AspS9I GGNCC 4 cut(s) 40, 631, 865, 1062
AsuHPI GGTGA 6 cut(s) 7, 306, 997, 1120, 1215, 1447
AvaII GGWCC 2 cut(s) 631, 865
BbvI GCAGC 3 cut(s) 840, 923, 1372
BccI CCATC 4 cut(s) 20, 206, 212, 1475
BceAI ACGGC 2 cut(s) 142, 192
BcgI CGANNNNNNTGC 4 cut(s) 169, 203, 885, 919
BclI TGATCA 3 cut(s) 22, 79, 643
BcoDI GTCTC 3 cut(s) 346, 884, 1011
BfaI CTAG 7 cut(s) 93, 257, 267, 780, 908, 966, 1145
BfoI RGCGCY 2 cut(s) 246, 267
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 5 cut(s) 241, 378, 854, 912, 1386
BlpI GCTNAGC 1 cut(s) 882
BlsI GCNGC 5 cut(s) 242, 379, 855, 913, 1387
Bme18I GGWCC 2 cut(s) 631, 865
BmeRI GACNNNNNGTC 1 cut(s) 1255
BmgT120I GGNCC 4 cut(s) 40, 631, 865, 1062
BmrI ACTGGG 2 cut(s) 597, 1580
BmsI GCATC 6 cut(s) 117, 507, 607, 703, 887, 1160
BmuI ACTGGG 2 cut(s) 597, 1580
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpmI CTGGAG 1 cut(s) 1518
Bpu1102I GCTNAGC 1 cut(s) 882
BpuEI CTTGAG 1 cut(s) 1349
Bsa29I ATCGAT 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 5 cut(s) 165, 931, 1058, 1130, 1190
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 4 cut(s) 373, 723, 1345, 1541
Bse1I ACTGG 5 cut(s) 280, 393, 430, 603, 1575
Bse3DI GCAATG 2 cut(s) 42, 1000
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 5 cut(s) 165, 931, 1058, 1130, 1190
BseGI GGATG 3 cut(s) 598, 685, 715
BseLI CCNNNNNNNGG 4 cut(s) 373, 723, 1345, 1541
BseMI GCAATG 2 cut(s) 42, 1000
BseMII CTCAG 2 cut(s) 1014, 1401
BseNI ACTGG 5 cut(s) 280, 393, 430, 603, 1575
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 3 cut(s) 840, 923, 1372
BsgI GTGCAG 2 cut(s) 729, 1077
Bsh1236I CGCG 3 cut(s) 382, 870, 1321
BshFI GGCC 4 cut(s) 41, 233, 363, 1064
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 2 cut(s) 114, 317
BslFI GGGAC 2 cut(s) 939, 1361
BslI CCNNNNNNNGG 4 cut(s) 373, 723, 1345, 1541
BsmAI GTCTC 3 cut(s) 346, 884, 1011
BsmBI CGTCTC 1 cut(s) 346
BsmFI GGGAC 2 cut(s) 939, 1361
BsnI GGCC 4 cut(s) 41, 233, 363, 1064
Bso31I GGTCTC 1 cut(s) 884
Bsp143I GATC 5 cut(s) 22, 79, 643, 1030, 1174
Bsp1720I GCTNAGC 1 cut(s) 882
BspACI CCGC 8 cut(s) 43, 240, 367, 377, 654, 868, 1238, 1388
BspANI GGCC 4 cut(s) 41, 233, 363, 1064
BspCNI CTCAG 2 cut(s) 1015, 1402
BspDI ATCGAT 1 cut(s) 207
BspFNI CGCG 3 cut(s) 382, 870, 1321
BspPI GGATC 1 cut(s) 1038
BspTNI GGTCTC 1 cut(s) 884
BsrBI CCGCTC 2 cut(s) 45, 240
BsrDI GCAATG 2 cut(s) 42, 1000
BsrI ACTGG 5 cut(s) 280, 393, 430, 603, 1575
BssECI CCNNGG 5 cut(s) 165, 931, 1058, 1130, 1190
BssMI GATC 5 cut(s) 22, 79, 643, 1030, 1174
BssT1I CCWWGG 3 cut(s) 165, 1058, 1130
Bst4CI ACNGT 2 cut(s) 985, 1352
Bst6I CTCTTC 5 cut(s) 666, 685, 1337, 1391, 1467
BstC8I GCNNGC 7 cut(s) 43, 123, 144, 262, 329, 916, 1359
BstDEI CTNAG 4 cut(s) 521, 882, 1023, 1410
BstDSI CCRYGG 1 cut(s) 1190
BstF5I GGATG 3 cut(s) 598, 685, 715
BstFNI CGCG 3 cut(s) 382, 870, 1321
BstH2I RGCGCY 2 cut(s) 246, 267
BstHHI GCGC 8 cut(s) 164, 245, 266, 382, 945, 1321, 1338, 1632
BstKTI GATC 5 cut(s) 25, 82, 646, 1033, 1177
BstMAI GTCTC 3 cut(s) 346, 884, 1011
BstMBI GATC 5 cut(s) 22, 79, 643, 1030, 1174
BstMWI GCNNNNNNNGC 6 cut(s) 47, 526, 1244, 1253, 1385, 1636
BstNSI RCATGY 4 cut(s) 125, 433, 918, 1232
BstUI CGCG 3 cut(s) 382, 870, 1321
BstV1I GCAGC 3 cut(s) 840, 923, 1372
BstX2I RGATCY 1 cut(s) 1030
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 1 cut(s) 1030
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 4 cut(s) 41, 233, 363, 1064
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 1190
BtgZI GCGATG 2 cut(s) 94, 1173
BtsCI GGATG 3 cut(s) 598, 685, 715
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 4 cut(s) 192, 1020, 1357, 1568
Cac8I GCNNGC 7 cut(s) 43, 123, 144, 262, 329, 916, 1359
CfoI GCGC 8 cut(s) 164, 245, 266, 382, 945, 1321, 1338, 1632
Cfr13I GGNCC 4 cut(s) 40, 631, 865, 1062
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 1245
Csp6I GTAC 2 cut(s) 223, 1459
CviQI GTAC 2 cut(s) 223, 1459
DdeI CTNAG 4 cut(s) 521, 882, 1023, 1410
DpnI GATC 5 cut(s) 24, 81, 645, 1032, 1176
DpnII GATC 5 cut(s) 22, 79, 643, 1030, 1174
DraI TTTAAA 1 cut(s) 1314
DraIII CACNNNGTG 1 cut(s) 1574
DriI GACNNNNNGTC 1 cut(s) 1255
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 5 cut(s) 666, 685, 1337, 1391, 1467
Eam1105I GACNNNNNGTC 1 cut(s) 1255
EarI CTCTTC 5 cut(s) 666, 685, 1337, 1391, 1467
Eco130I CCWWGG 3 cut(s) 165, 1058, 1130
Eco31I GGTCTC 1 cut(s) 884
Eco47I GGWCC 2 cut(s) 631, 865
Eco47III AGCGCT 1 cut(s) 265
Eco57I CTGAAG 3 cut(s) 1361, 1401, 1415
EcoRI GAATTC 2 cut(s) 695, 1486
EcoT14I CCWWGG 3 cut(s) 165, 1058, 1130
ErhI CCWWGG 3 cut(s) 165, 1058, 1130
Esp3I CGTCTC 1 cut(s) 346
FalI AAGNNNNNCTT 2 cut(s) 931, 963
FaqI GGGAC 2 cut(s) 939, 1361
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 3 cut(s) 22, 79, 643
Fnu4HI GCNGC 5 cut(s) 241, 378, 854, 912, 1386
FokI GGATG 3 cut(s) 585, 692, 722
Fsp4HI GCNGC 5 cut(s) 241, 378, 854, 912, 1386
FspBI CTAG 7 cut(s) 93, 257, 267, 780, 908, 966, 1145
GlaI GCGC 8 cut(s) 163, 244, 265, 381, 944, 1320, 1337, 1631
GluI GCNGC 5 cut(s) 241, 378, 854, 912, 1386
GsuI CTGGAG 1 cut(s) 1518
HaeII RGCGCY 2 cut(s) 246, 267
HaeIII GGCC 4 cut(s) 41, 233, 363, 1064
HapII CCGG 2 cut(s) 114, 317
HgaI GACGC 1 cut(s) 1245
HhaI GCGC 8 cut(s) 164, 245, 266, 382, 945, 1321, 1338, 1632
Hin6I GCGC 8 cut(s) 162, 243, 264, 380, 943, 1319, 1336, 1630
HinP1I GCGC 8 cut(s) 162, 243, 264, 380, 943, 1319, 1336, 1630
HincII GTYRAC 2 cut(s) 1183, 1260
HindII GTYRAC 2 cut(s) 1183, 1260
HinfI GANTC 3 cut(s) 89, 650, 1619
HpaII CCGG 2 cut(s) 114, 317
HphI GGTGA 6 cut(s) 7, 306, 997, 1120, 1215, 1447
Hpy166II GTNNAC 3 cut(s) 386, 1183, 1260
Hpy188I TCNGA 5 cut(s) 396, 406, 516, 565, 1287
Hpy188III TCNNGA 7 cut(s) 93, 130, 285, 647, 707, 1366, 1535
Hpy8I GTNNAC 3 cut(s) 386, 1183, 1260
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 6 cut(s) 68, 213, 670, 680, 824, 1021
HpyCH4III ACNGT 2 cut(s) 985, 1352
HpyCH4IV ACGT 1 cut(s) 1179
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 526, 1244, 1253, 1385, 1636
HpyF3I CTNAG 4 cut(s) 521, 882, 1023, 1410
HpySE526I ACGT 1 cut(s) 1179
HspAI GCGC 8 cut(s) 162, 243, 264, 380, 943, 1319, 1336, 1630
Ksp22I TGATCA 3 cut(s) 22, 79, 643
Kzo9I GATC 5 cut(s) 22, 79, 643, 1030, 1174
LmnI GCTCC 1 cut(s) 1134
Lsp1109I GCAGC 3 cut(s) 840, 923, 1372
LweI GCATC 6 cut(s) 117, 507, 607, 703, 887, 1160
MaeI CTAG 7 cut(s) 93, 257, 267, 780, 908, 966, 1145
MaeII ACGT 1 cut(s) 1179
MaeIII GTNAC 7 cut(s) 169, 197, 299, 775, 1112, 1198, 1221
MalI GATC 5 cut(s) 24, 81, 645, 1032, 1176
MbiI CCGCTC 2 cut(s) 45, 240
MboI GATC 5 cut(s) 22, 79, 643, 1030, 1174
MflI RGATCY 1 cut(s) 1030
MluCI AATT 9 cut(s) 84, 479, 695, 721, 1067, 1403, 1430, 1486, 1613
MlyI GAGTC 2 cut(s) 98, 644
MmeI TCCRAC 1 cut(s) 1407
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 5 cut(s) 467, 1074, 1140, 1233, 1313
MslI CAYNNNNRTG 3 cut(s) 24, 933, 1121
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 2 cut(s) 114, 317
MvnI CGCG 3 cut(s) 382, 870, 1321
MwoI GCNNNNNNNGC 6 cut(s) 47, 526, 1244, 1253, 1385, 1636
NdeII GATC 5 cut(s) 22, 79, 643, 1030, 1174
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 4 cut(s) 299, 1112, 1198, 1221
NspI RCATGY 4 cut(s) 125, 433, 918, 1232
OliI CACNNNNGTG 1 cut(s) 933
PaeI GCATGC 2 cut(s) 125, 918
PciI ACATGT 1 cut(s) 1228
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 1619
PflMI CCANNNNNTGG 1 cut(s) 1541
PkrI GCNGC 5 cut(s) 242, 379, 855, 913, 1387
PleI GAGTC 2 cut(s) 97, 644
PpsI GAGTC 2 cut(s) 97, 644
PscI ACATGT 1 cut(s) 1228
PspPI GGNCC 4 cut(s) 40, 631, 865, 1062
PsuI RGATCY 1 cut(s) 1030
RsaI GTAC 2 cut(s) 224, 1460
RsaNI GTAC 2 cut(s) 223, 1459
RseI CAYNNNNRTG 3 cut(s) 24, 933, 1121
SaqAI TTAA 5 cut(s) 467, 1074, 1140, 1233, 1313
SatI GCNGC 5 cut(s) 241, 378, 854, 912, 1386
Sau3AI GATC 5 cut(s) 22, 79, 643, 1030, 1174
Sau96I GGNCC 4 cut(s) 40, 631, 865, 1062
SchI GAGTC 2 cut(s) 98, 644
SfaNI GCATC 6 cut(s) 117, 507, 607, 703, 887, 1160
SinI GGWCC 2 cut(s) 631, 865
SmiMI CAYNNNNRTG 3 cut(s) 24, 933, 1121
SmlI CTYRAG 1 cut(s) 1364
SmoI CTYRAG 1 cut(s) 1364
SphI GCATGC 2 cut(s) 125, 918
Sse9I AATT 9 cut(s) 84, 479, 695, 721, 1067, 1403, 1430, 1486, 1613
SsiI CCGC 8 cut(s) 43, 240, 367, 377, 654, 868, 1238, 1388
SspI AATATT 1 cut(s) 443
SspMI CTAG 7 cut(s) 93, 257, 267, 780, 908, 966, 1145
StyI CCWWGG 3 cut(s) 165, 1058, 1130
TaaI ACNGT 2 cut(s) 985, 1352
TaiI ACGT 1 cut(s) 1182
TaqI TCGA 4 cut(s) 207, 536, 608, 1470
TaqII GACCGA 1 cut(s) 286
TasI AATT 9 cut(s) 84, 479, 695, 721, 1067, 1403, 1430, 1486, 1613
TauI GCSGC 2 cut(s) 243, 380
TfiI GAWTC 1 cut(s) 1619
Tru1I TTAA 5 cut(s) 467, 1074, 1140, 1233, 1313
Tru9I TTAA 5 cut(s) 467, 1074, 1140, 1233, 1313
TscAI CASTG 4 cut(s) 192, 1027, 1357, 1575
TseFI GTSAC 4 cut(s) 299, 1112, 1198, 1221
TseI GCWGC 3 cut(s) 853, 911, 1385
Tsp45I GTSAC 4 cut(s) 299, 1112, 1198, 1221
TspDTI ATGAA 3 cut(s) 435, 473, 602
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 4 cut(s) 192, 1027, 1357, 1575
Van91I CCANNNNNTGG 1 cut(s) 1541
VpaK11BI GGWCC 2 cut(s) 631, 865
XapI RAATTY 4 cut(s) 479, 695, 1486, 1613
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 4 cut(s) 125, 433, 918, 1232
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 7 cut(s) 93, 257, 267, 780, 908, 966, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.