Rorug02G0218100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001462
Physical Location & Seq
Forward (+)
21029435 .. 21030594
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0218100.1

Sequence Viewer

Length: 888 bp
ATGTTTGGTCGTCGACGAAAAGCATTGAAAATCTTCAAATCTCTTAGACAAATTTTTCAATTGCACCGGCGACAACACCGACGAGCAGAAAAACAATGCGGTCCTAACACCTTGAGGGAGTACACGGCCGAAGAGATTAAATTAGCTACTCATGATTTTTCTGACCCGGTATTACTTCAAGCTCAAGGCATGTGGAGCAGTGTGTTCATAGCTCCAATTAAAGACGAAACAGTTGCAATCAAGTTTCTTGCACAGGAATATTGCTTCGAAGACATGGTTGAATCCCTCGGCAAGATTAGACACCCTAATATTCTTGCCATGAAAGGCATATGCTCCGAGATGCGGTGCTTTGTTTATGAGTATATAGAGAATAGCTGCTTCGATGACTTCAAAAGAAATATTTCATGGCAAGACCGCATCCTTATTGCTGCGGATGTTTGCTCGGCTTTGTGCTACCTTTACCAGCTTCAGCCTGGATTTATAGTTCAGGGTCATCTCAGTGCATCCAACGTCCTCATTGATAGCGAAATCTCTGCCAAGGTTAATCTTGAGCAGCCTGAAGTGTACCGGACAAGCGAATTGGTAAAGGATGTGAAGGCTTTTGGGAAGTTGATTCTGCATCTATTAGGTGGATATGAGGGGACTAGTACTGTTACTTATTATTTGTCTGAAACCTATGTCCAGCTTCGGTTTCTAGACGAGACAGCAGGTCAATGGCCGATGGAATTGGTTGAGGAACTTCTCAAGTTGTCTGAAAGGTGCACTTCCTTTCAGGGATGGGATGATAATCTTAGAGAACCGTATATGGTGATAGTAATGAAAGAGCTTAAATTGATTAAGGAGAAAGCTGACCAAATGGCCAGTCATGCAAGAGAGAACTCGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

295

Amino Acids

34.23

Weight (kDa)

6.21

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 67 - 181 2.5e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 698
AccI GTMKAC 1 cut(s) 13
AciI CCGC 4 cut(s) 99, 343, 415, 431
AcoI YGGCCR 3 cut(s) 126, 716, 858
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 2 cut(s) 452, 579
AfaI GTAC 3 cut(s) 122, 566, 649
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 6 cut(s) 28, 37, 59, 179, 281, 391
AhdI GACNNNNNGTC 1 cut(s) 708
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 1 cut(s) 472
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 8 cut(s) 146, 182, 212, 375, 466, 685, 826, 848
AluI AGCT 8 cut(s) 146, 182, 212, 375, 466, 685, 826, 848
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 1 cut(s) 695
Alw44I GTGCAC 1 cut(s) 760
AoxI GGCC 3 cut(s) 126, 716, 858
ApaLI GTGCAC 1 cut(s) 760
ApeKI GCWGC 3 cut(s) 375, 428, 553
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
Asp700I GAANNNNTTC 2 cut(s) 32, 400
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 820
AsuII TTCGAA 1 cut(s) 267
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 764
BalI TGGCCA 1 cut(s) 860
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 3 cut(s) 362, 415, 565
BccI CCATC 2 cut(s) 715, 771
BceAI ACGGC 1 cut(s) 141
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 515, 549
BciT130I CCWGG 1 cut(s) 474
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 695
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 2 cut(s) 645, 695
BfuAI ACCTGC 1 cut(s) 698
BisI GCNGC 3 cut(s) 376, 429, 554
BlsI GCNGC 3 cut(s) 377, 430, 555
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 167, 474
Bme18I GGWCC 1 cut(s) 101
BmeRI GACNNNNNGTC 1 cut(s) 708
BmgT120I GGNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 167, 474
BmsI GCATC 4 cut(s) 330, 426, 512, 628
BpiI GAAGAC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 267
BpuEI CTTGAG 4 cut(s) 133, 168, 569, 728
BpuMI CCSGG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 786
BsaJI CCNNGG 2 cut(s) 286, 537
BsaWI WCCGGW 1 cut(s) 567
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 861
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 286, 537
BseGI GGATG 6 cut(s) 417, 439, 503, 595, 782, 787
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 511
BseNI ACTGG 1 cut(s) 861
BseSI GKGCMC 1 cut(s) 764
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 362, 415, 565
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 128, 718, 860
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 764
BsiSI CCGG 3 cut(s) 67, 167, 568
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 695
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 3 cut(s) 128, 718, 860
Bsp119I TTCGAA 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 764
BspACI CCGC 4 cut(s) 99, 343, 415, 431
BspANI GGCC 3 cut(s) 128, 718, 860
BspCNI CTCAG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 698
BspT104I TTCGAA 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 861
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 286, 537
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 232, 652, 801
Bst6I CTCTTC 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 44, 497, 791
BstF5I GGATG 6 cut(s) 417, 439, 503, 595, 782, 787
BstMAI GTCTC 1 cut(s) 695
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 195, 866
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 165, 472
BstSLI GKGCMC 1 cut(s) 764
BstV1I GCAGC 3 cut(s) 362, 415, 565
BstV2I GAAGAC 1 cut(s) 276
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 3 cut(s) 128, 718, 860
BtsCI GGATG 6 cut(s) 417, 439, 503, 595, 782, 787
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 205, 505
BveI ACCTGC 1 cut(s) 698
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 121, 565, 648
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 6 cut(s) 152, 190, 274, 319, 405, 866
CviQI GTAC 3 cut(s) 121, 565, 648
DdeI CTNAG 3 cut(s) 44, 497, 791
DriI GACNNNNNGTC 1 cut(s) 708
EaeI YGGCCR 3 cut(s) 126, 716, 858
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 101
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 452, 579
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 6 cut(s) 155, 193, 277, 322, 408, 869
FalI AAGNNNNNCTT 2 cut(s) 748, 780
FaqI GGGAC 1 cut(s) 655
FatI CATG 6 cut(s) 151, 189, 273, 318, 404, 865
FauNDI CATATG 1 cut(s) 329
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 376, 429, 554
FokI GGATG 6 cut(s) 404, 446, 490, 602, 789, 794
Fsp4HI GCNGC 3 cut(s) 376, 429, 554
FspBI CTAG 2 cut(s) 645, 695
GluI GCNGC 3 cut(s) 376, 429, 554
HaeIII GGCC 3 cut(s) 128, 718, 860
HapII CCGG 3 cut(s) 67, 167, 568
Hin1II CATG 6 cut(s) 155, 193, 277, 322, 408, 869
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HinfI GANTC 2 cut(s) 281, 613
HpaII CCGG 3 cut(s) 67, 167, 568
HphI GGTGA 1 cut(s) 820
Hpy166II GTNNAC 4 cut(s) 14, 123, 565, 762
Hpy188I TCNGA 4 cut(s) 163, 337, 670, 754
Hpy188III TCNNGA 3 cut(s) 152, 548, 695
Hpy8I GTNNAC 4 cut(s) 14, 123, 565, 762
Hpy99I CGWCG 3 cut(s) 15, 18, 84
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 3 cut(s) 232, 652, 801
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 7 cut(s) 64, 236, 251, 503, 619, 762, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 866
HpyF3I CTNAG 3 cut(s) 44, 497, 791
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 6 cut(s) 155, 193, 277, 322, 408, 869
LmnI GCTCC 3 cut(s) 195, 217, 338
Lsp1109I GCAGC 3 cut(s) 362, 415, 565
LweI GCATC 4 cut(s) 330, 426, 512, 628
MaeI CTAG 2 cut(s) 645, 695
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 652
MboII GAAGA 3 cut(s) 25, 143, 281
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 764
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 7 cut(s) 51, 59, 140, 216, 578, 725, 830
MluNI TGGCCA 1 cut(s) 860
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 5 cut(s) 108, 296, 524, 631, 727
Mox20I TGGCCA 1 cut(s) 860
MroXI GAANNNNTTC 2 cut(s) 32, 400
MscI TGGCCA 1 cut(s) 860
MseI TTAA 5 cut(s) 138, 219, 543, 828, 837
MslI CAYNNNNRTG 1 cut(s) 498
Msp20I TGGCCA 1 cut(s) 860
MspI CCGG 3 cut(s) 67, 167, 568
MspR9I CCNGG 2 cut(s) 167, 474
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 195, 866
NciI CCSGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 329
NlaIII CATG 6 cut(s) 155, 193, 277, 322, 408, 869
NmeAIII GCCGAG 2 cut(s) 267, 422
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 1 cut(s) 267
PagI TCATGA 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 32, 400
PfeI GAWTC 2 cut(s) 281, 613
PkrI GCNGC 3 cut(s) 377, 430, 555
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 3 cut(s) 122, 566, 649
RsaNI GTAC 3 cut(s) 121, 565, 648
RseI CAYNNNNRTG 1 cut(s) 498
SalI GTCGAC 1 cut(s) 12
SaqAI TTAA 5 cut(s) 138, 219, 543, 828, 837
SatI GCNGC 3 cut(s) 376, 429, 554
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 167, 474
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 4 cut(s) 330, 426, 512, 628
SfuI TTCGAA 1 cut(s) 267
SgrAI CRCCGGYG 1 cut(s) 66
SgrDI CGTCGACG 1 cut(s) 12
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 4 cut(s) 112, 183, 548, 743
SmoI CTYRAG 4 cut(s) 112, 183, 548, 743
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 7 cut(s) 51, 59, 140, 216, 578, 725, 830
SsiI CCGC 4 cut(s) 99, 343, 415, 431
SspI AATATT 3 cut(s) 260, 310, 400
SspMI CTAG 2 cut(s) 645, 695
StyD4I CCNGG 2 cut(s) 165, 472
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 3 cut(s) 232, 652, 801
TaiI ACGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 13, 267, 381
TasI AATT 7 cut(s) 51, 59, 140, 216, 578, 725, 830
TatI WGTACW 2 cut(s) 120, 647
TfiI GAWTC 2 cut(s) 281, 613
Tru1I TTAA 5 cut(s) 138, 219, 543, 828, 837
Tru9I TTAA 5 cut(s) 138, 219, 543, 828, 837
TscAI CASTG 2 cut(s) 205, 505
TseI GCWGC 3 cut(s) 375, 428, 553
TspDTI ATGAA 4 cut(s) 196, 335, 393, 833
TspRI CASTG 2 cut(s) 205, 505
VneI GTGCAC 1 cut(s) 760
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 51
XbaI TCTAGA 1 cut(s) 694
XceI RCATGY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 32, 400
XspI CTAG 2 cut(s) 645, 695
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.