Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

13012638 .. 13013447

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10122.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGGCTTCCGAGACCGCAAAGTCCATTCATCTTTCAGACGACACCGAAGAGGCCATTCATCTTTCCGACACCGAAGAGGCCATTCATCTTTCCGACACCGAAGATAACGAAACTGACGAGCCTATTGACCTTGAAGTGTCTTGGGAGGATGTCTTAGACTACCGAAAGTTGACAGTTGAAGATGTCATGGCTAAGACGTTCAAAACACTAGAGGAAGCCGAGAAATTCTATTATTCCTATGCGTTGGCAATTGGCTTCGGACCAAGGAAGGACACAAGAGGAGGATTGTTTGAGGGTAAGCTTCGGAGGAGACAGTGGGTCTGCAACAAGCAAGGTTATCGAGATAAAAAGTGGCTCGATCGCAAAACTGATGGGAGTGGTCGTAATCGTCGGAAGTTGGCAAGGCAAGGTTGCATGGCGAAGTTCAGAGTGAATTACATGGTAGATGAAGGCTATTACACGGTGAGAGCCTTTGATGAAGATCATTCTCATCAGTGTGCAAACCCACGGCAAGCCGCCTTCATTCGTTCACACCGGAATGTCGACGAAGCAGCATTGGGCAATACAAACACAATGACCAAAGTTTCAATCCGACCATGTCATGCGTTTGAGTATATGGTGGAGCAATCAGGGGGGTACATCACAGTTGGATTCACAAGGAAGGACTTATATAACAAGCTCGACCAACAACGACGCACCACCCCTTTTGAAAGTGATTCTGAAGGCGCTTTAAGCTACATGAGCGCACTTGCAGCAAAAGACCCCACTTCTACTGCCGATTCAGTGTGGACGACGAAGATAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05160 map03013 map05160

Pfam Domains

Protein Families

PCI

Protein Analysis

270

Amino Acids

30.88

Weight (kDa)

5.5

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	76 - 168	5.2e-14	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	2 cut(s)	18, 519
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	1 cut(s)	641
AgsI	TTSAA	5 cut(s)	137, 182, 205, 591, 713
AhdI	GACNNNNNGTC	1 cut(s)	320
AluBI	AGCT	3 cut(s)	304, 682, 738
AluI	AGCT	3 cut(s)	304, 682, 738
Alw26I	GTCTC	2 cut(s)	8, 307
AoxI	GGCC	2 cut(s)	54, 81
ApeKI	GCWGC	2 cut(s)	554, 755
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	731, 749
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	566, 767
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	527
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcoDI	GTCTC	2 cut(s)	8, 307
BfaI	CTAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	732
BisI	GCNGC	3 cut(s)	519, 555, 756
BlsI	GCNGC	3 cut(s)	520, 556, 757
Bme18I	GGWCC	1 cut(s)	263
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	266, 509
BsaWI	WCCGGW	1 cut(s)	537
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bse8I	GATNNNNATC	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	266, 509
BseGI	GGATG	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	483
BseRI	GAGGAG	2 cut(s)	297, 325
BseXI	GCAGC	2 cut(s)	566, 767
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	2 cut(s)	56, 83
BsiEI	CGRYCG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	8, 307
BsnI	GGCC	2 cut(s)	56, 83
Bso31I	GGTCTC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	361, 484
BspACI	CCGC	2 cut(s)	18, 519
BspANI	GGCC	2 cut(s)	56, 83
BspTNI	GGTCTC	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	266, 509
BssMI	GATC	2 cut(s)	361, 484
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	4 cut(s)	178, 318, 466, 649
Bst6I	CTCTTC	2 cut(s)	45, 72
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	157, 195
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	732
BstHHI	GCGC	2 cut(s)	731, 749
BstKTI	GATC	2 cut(s)	364, 487
BstMAI	GTCTC	2 cut(s)	8, 307
BstMBI	GATC	2 cut(s)	361, 484
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	735, 744, 755
BstV1I	GCAGC	2 cut(s)	566, 767
BsuRI	GGCC	2 cut(s)	56, 83
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	323, 503, 792
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	2 cut(s)	731, 749
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	1 cut(s)	640
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	6 cut(s)	190, 418, 442, 600, 605, 742
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	2 cut(s)	157, 195
DpnI	GATC	2 cut(s)	363, 486
DpnII	GATC	2 cut(s)	361, 484
DrdI	GACNNNNNNGTC	1 cut(s)	22
DriI	GACNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	45, 72
Eam1105I	GACNNNNNGTC	1 cut(s)	320
EarI	CTCTTC	2 cut(s)	45, 72
Eco130I	CCWWGG	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	744
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	6 cut(s)	193, 421, 445, 603, 608, 745
FatI	CATG	6 cut(s)	189, 417, 441, 599, 604, 741
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	519, 555, 756
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	519, 555, 756
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	730, 748
GluI	GCNGC	3 cut(s)	519, 555, 756
HaeII	RGCGCY	1 cut(s)	732
HaeIII	GGCC	2 cut(s)	56, 83
HapII	CCGG	1 cut(s)	538
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	2 cut(s)	731, 749
Hin1II	CATG	6 cut(s)	193, 421, 445, 603, 608, 745
Hin6I	GCGC	2 cut(s)	729, 747
HinP1I	GCGC	2 cut(s)	729, 747
HincII	GTYRAC	2 cut(s)	174, 547
HindII	GTYRAC	2 cut(s)	174, 547
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	3 cut(s)	654, 719, 782
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	4 cut(s)	174, 533, 547, 792
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	4 cut(s)	174, 533, 547, 792
Hpy99I	CGWCG	4 cut(s)	396, 551, 699, 799
HpyAV	CCTTC	5 cut(s)	265, 446, 532, 658, 719
HpyCH4III	ACNGT	4 cut(s)	178, 318, 466, 649
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	4 cut(s)	327, 417, 503, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	735, 744, 755
HpyF3I	CTNAG	2 cut(s)	157, 195
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	6 cut(s)	193, 421, 445, 603, 608, 745
HspAI	GCGC	2 cut(s)	729, 747
Kzo9I	GATC	2 cut(s)	361, 484
LmnI	GCTCC	1 cut(s)	625
LpnPI	CCDG	2 cut(s)	551, 618
Lsp1109I	GCAGC	2 cut(s)	566, 767
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	200
MalI	GATC	2 cut(s)	363, 486
MboI	GATC	2 cut(s)	361, 484
MboII	GAAGA	5 cut(s)	62, 89, 116, 194, 494
MfeI	CAATTG	1 cut(s)	252
MluCI	AATT	3 cut(s)	227, 252, 436
MmeI	TCCRAC	5 cut(s)	93, 120, 374, 619, 631
MnlI	CCTC	8 cut(s)	46, 73, 142, 208, 275, 278, 289, 303
MseI	TTAA	1 cut(s)	734
MslI	CAYNNNNRTG	2 cut(s)	498, 540
MspI	CCGG	1 cut(s)	538
MunI	CAATTG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	735, 744, 755
NdeII	GATC	2 cut(s)	361, 484
NlaIII	CATG	6 cut(s)	193, 421, 445, 603, 608, 745
NmeAIII	GCCGAG	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	654, 719, 782
PflFI	GACNNNGTC	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	520, 556, 757
Ple19I	CGATCG	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	600
PvuI	CGATCG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	2 cut(s)	498, 540
SalI	GTCGAC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	3 cut(s)	519, 555, 756
Sau3AI	GATC	2 cut(s)	361, 484
Sau96I	GGNCC	1 cut(s)	263
SetI	ASST	7 cut(s)	135, 203, 306, 340, 415, 684, 740
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	498, 540
Sse9I	AATT	3 cut(s)	227, 252, 436
SsiI	CCGC	2 cut(s)	18, 519
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	4 cut(s)	178, 318, 466, 649
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	4 cut(s)	343, 360, 546, 684
TasI	AATT	3 cut(s)	227, 252, 436
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	3 cut(s)	654, 719, 782
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	3 cut(s)	323, 503, 792
TseI	GCWGC	2 cut(s)	554, 755
TspDTI	ATGAA	6 cut(s)	20, 50, 77, 465, 495, 514
TspRI	CASTG	3 cut(s)	323, 503, 792
Tth111I	GACNNNGTC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.