Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007609.1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

5646 .. 9057

Gene Structure 3412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

atgcttaatttgctgacgtcgatttttgattttcaaataggcttttcagacatattggtttatccaagcatgaactttgagcatcccagctcaagtgattgccgatacacagaggtccaatctgctgatcaggactcagctgaaccaccacaggaagagagggtcagttatggggatgagaattttactgccaaaagctgtgttgggaaaagttttgctgaattgactgcggaggatgtagaaggaagagaattcgccactctggatgatgccgaaaattggtatagaatgtacgcaactgcacttggttttatgacaagattgcagagggttactagagggattggaggcaggataacgaggcgaagattggtttgtaataaagaaggtaaaagagaagcaaagtggctgcaaaaagaggaccgtgttcgtaatgctaagcaagagaccagatgcaactgcctagcagcatgctgtatccatttcaataagaatagtcaaacatacatcatcactgaattcaaaaccgaacacaatcacgatcttgccatgcattccaatggttcggttactcatgcagacatgggacatcttggtgcaaggcgcatttgttcagtcagcacctctagggcagatgactacacggtgaaatgcaatggggggtttgagtttgtgggagacactgagaaggatcttttcaacaagatagaggcagagccaagggctaaattgtttaagcagggggaagaaactgcaccaatagtggaggtgagtgacattacaatgccaccttggagcattaacctagtagggttcggcgatgagtatagatgcgatcacgttgacataccacagggagtgacttatagctatgtctcattgtcaccacatgttaaagcgattgccagtctaacatcaatagcaacagagcagtcgctaaaggcgcgtgacgagattttgcgcctgaagagggacagtgagctggcactcaaggcaaaggaagctgaagctgcggtgctgaagagggaattagctgagtgtcagcgagagttggaattggtgaagtcggcagataaatataggtacagaaccatcgaagaggttggcgggaattctaaaaagcagattacagaggataactccaataggggtcaatctccagagggtggtgctgatattcaactgttatgctcactgggtgggtggaaaagtggctttgccccagacaaagatatggaatttgattcaacataccatctccagccacacaacttcgctgtaatatgcccctcagggacgataccctttagtcccgctaatgctggtagaggttctgatttggtgttgctagctggagcagcttggccattccaaaaataccaccgtatggagtcggcttccgataacgtggacaggagtccaatcttccgatatgtgtatgtttctgaaactcgcgctaatctgtcaagagaaatacaacggcgtcaagaagggagaccgcggttggcggtctttgctcctccgctgctaatgttaagcaatgtacttgtattgacaaatgcagcggtgaatagctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

526

Amino Acids

58.95

Weight (kDa)

5.85

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	20
AccB7I	CCANNNNNTGG	2 cut(s)	1166, 1387
AccII	CGCG	3 cut(s)	946, 1455, 1501
AciI	CCGC	9 cut(s)	230, 1013, 1107, 1314, 1499, 1501, 1508, 1523, 1565
AclWI	GGATC	1 cut(s)	699
AcoI	YGGCCR	1 cut(s)	1364
AcsI	RAATTY	5 cut(s)	181, 251, 518, 1111, 1238
AcuI	CTGAAG	3 cut(s)	986, 1026, 1040
AcyI	GRCGYC	2 cut(s)	17, 1483
AdeI	CACNNNGTG	1 cut(s)	1199
AfaI	GTAC	3 cut(s)	293, 1085, 1545
AfiI	CCNNNNNNNGG	4 cut(s)	279, 970, 1166, 1387
AflIII	ACRYGT	1 cut(s)	889
AgsI	TTSAA	6 cut(s)	35, 487, 523, 700, 1181, 1248
Alw26I	GTCTC	4 cut(s)	440, 672, 880, 1489
AlwI	GGATC	1 cut(s)	699
AoxI	GGCC	1 cut(s)	1364
ApeKI	GCWGC	6 cut(s)	409, 467, 1010, 1358, 1525, 1562
ApoI	RAATTY	5 cut(s)	181, 251, 518, 1111, 1238
AspLEI	GCGC	4 cut(s)	606, 946, 963, 1457
AspS9I	GGNCC	2 cut(s)	115, 421
AsuHPI	GGTGA	5 cut(s)	658, 781, 876, 1072, 1579
AsuNHI	GCTAGC	1 cut(s)	1348
AvaII	GGWCC	2 cut(s)	115, 421
AxyI	CCTNAGG	1 cut(s)	1291
BalI	TGGCCA	1 cut(s)	1366
BbvI	GCAGC	6 cut(s)	396, 479, 997, 1370, 1512, 1574
BccI	CCATC	2 cut(s)	1100, 1263
BceAI	ACGGC	1 cut(s)	1496
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	4 cut(s)	440, 672, 880, 1489
BfaI	CTAG	5 cut(s)	336, 464, 627, 806, 1349
BfuI	GTATCC	1 cut(s)	488
BisI	GCNGC	6 cut(s)	410, 468, 1011, 1359, 1526, 1563
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	6 cut(s)	411, 469, 1012, 1360, 1527, 1564
Bme18I	GGWCC	2 cut(s)	115, 421
BmgT120I	GGNCC	2 cut(s)	115, 421
BmrI	ACTGGG	1 cut(s)	1205
BmsI	GCATC	4 cut(s)	91, 259, 443, 821
BmtI	GCTAGC	1 cut(s)	1352
BmuI	ACTGGG	1 cut(s)	1205
BoxI	GACNNNNGTC	1 cut(s)	1416
BplI	GAGNNNNNCTC	2 cut(s)	1124, 1156
BpmI	CTGGAG	3 cut(s)	1143, 1244, 1374
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	2 cut(s)	76, 974
BsaHI	GRCGYC	2 cut(s)	17, 1483
BsaI	GGTCTC	2 cut(s)	440, 1489
BsaJI	CCNNGG	3 cut(s)	719, 791, 1499
Bsc4I	CCNNNNNNNGG	4 cut(s)	279, 970, 1166, 1387
Bse1I	ACTGG	2 cut(s)	906, 1200
Bse21I	CCTNAGG	1 cut(s)	1291
Bse3DI	GCAATG	2 cut(s)	661, 1546
BseDI	CCNNGG	3 cut(s)	719, 791, 1499
BseGI	GGATG	4 cut(s)	82, 181, 241, 271
BseLI	CCNNNNNNNGG	4 cut(s)	279, 970, 1166, 1387
BseMI	GCAATG	2 cut(s)	661, 1546
BseMII	CTCAG	4 cut(s)	150, 675, 1026, 1305
BseNI	ACTGG	2 cut(s)	906, 1200
BseRI	GAGGAG	1 cut(s)	1509
BseXI	GCAGC	6 cut(s)	396, 479, 997, 1370, 1512, 1574
BseYI	CCCAGC	1 cut(s)	86
BsgI	GTGCAG	2 cut(s)	285, 738
Bsh1236I	CGCG	3 cut(s)	946, 1455, 1501
BshFI	GGCC	1 cut(s)	1366
BslFI	GGGAC	4 cut(s)	600, 986, 1296, 1309
BslI	CCNNNNNNNGG	4 cut(s)	279, 970, 1166, 1387
BsmAI	GTCTC	4 cut(s)	440, 672, 880, 1489
BsmFI	GGGAC	4 cut(s)	600, 986, 1296, 1309
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	1366
Bso31I	GGTCTC	2 cut(s)	440, 1489
Bsp143I	GATC	4 cut(s)	127, 541, 691, 835
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	9 cut(s)	230, 1013, 1107, 1314, 1499, 1501, 1508, 1523, 1565
BspANI	GGCC	1 cut(s)	1366
BspCNI	CTCAG	4 cut(s)	149, 676, 1027, 1304
BspFNI	CGCG	3 cut(s)	946, 1455, 1501
BspOI	GCTAGC	1 cut(s)	1352
BspPI	GGATC	1 cut(s)	699
BspTNI	GGTCTC	2 cut(s)	440, 1489
BsrDI	GCAATG	2 cut(s)	661, 1546
BsrI	ACTGG	2 cut(s)	906, 1200
BssECI	CCNNGG	3 cut(s)	719, 791, 1499
BssMI	GATC	4 cut(s)	127, 541, 691, 835
BssNI	GRCGYC	2 cut(s)	17, 1483
BssT1I	CCWWGG	2 cut(s)	719, 791
Bst4CI	ACNGT	5 cut(s)	425, 646, 977, 1185, 1385
Bst6I	CTCTTC	5 cut(s)	150, 241, 962, 1016, 1092
BstACI	GRCGYC	2 cut(s)	17, 1483
BstC8I	GCNNGC	3 cut(s)	472, 984, 1350
BstDEI	CTNAG	5 cut(s)	136, 438, 684, 1035, 1291
BstDSI	CCRYGG	1 cut(s)	1499
BstF5I	GGATG	4 cut(s)	82, 181, 241, 271
BstFNI	CGCG	3 cut(s)	946, 1455, 1501
BstHHI	GCGC	4 cut(s)	606, 946, 963, 1457
BstKTI	GATC	4 cut(s)	130, 544, 694, 838
BstMAI	GTCTC	4 cut(s)	440, 672, 880, 1489
BstMBI	GATC	4 cut(s)	127, 541, 691, 835
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 943, 992, 1001, 1010, 1358, 1514
BstNSI	RCATGY	2 cut(s)	474, 893
BstPAI	GACNNNNGTC	1 cut(s)	1416
BstUI	CGCG	3 cut(s)	946, 1455, 1501
BstV1I	GCAGC	6 cut(s)	396, 479, 997, 1370, 1512, 1574
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
Bsu36I	CCTNAGG	1 cut(s)	1291
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	1366
BtgI	CCRYGG	1 cut(s)	1499
BtgZI	GCGATG	1 cut(s)	834
BtsCI	GGATG	4 cut(s)	82, 181, 241, 271
BtsIMutI	CAGTG	4 cut(s)	513, 681, 982, 1193
Cac8I	GCNNGC	3 cut(s)	472, 984, 1350
CfoI	GCGC	4 cut(s)	606, 946, 963, 1457
Cfr13I	GGNCC	2 cut(s)	115, 421
Cfr42I	CCGCGG	1 cut(s)	1502
CseI	GACGC	1 cut(s)	1472
Csp6I	GTAC	3 cut(s)	292, 1084, 1544
CviAII	CATG	6 cut(s)	70, 471, 550, 575, 583, 890
CviQI	GTAC	3 cut(s)	292, 1084, 1544
DdeI	CTNAG	5 cut(s)	136, 438, 684, 1035, 1291
DpnI	GATC	4 cut(s)	129, 543, 693, 837
DpnII	GATC	4 cut(s)	127, 541, 691, 835
DraIII	CACNNNGTG	1 cut(s)	1199
EaeI	YGGCCR	1 cut(s)	1364
Eam1104I	CTCTTC	5 cut(s)	150, 241, 962, 1016, 1092
EarI	CTCTTC	5 cut(s)	150, 241, 962, 1016, 1092
Eco130I	CCWWGG	2 cut(s)	719, 791
Eco31I	GGTCTC	2 cut(s)	440, 1489
Eco47I	GGWCC	2 cut(s)	115, 421
Eco57I	CTGAAG	3 cut(s)	986, 1026, 1040
Eco81I	CCTNAGG	1 cut(s)	1291
EcoRI	GAATTC	3 cut(s)	251, 518, 1111
EcoT14I	CCWWGG	2 cut(s)	719, 791
EcoT22I	ATGCAT	1 cut(s)	555
ErhI	CCWWGG	2 cut(s)	719, 791
FaeI	CATG	6 cut(s)	73, 474, 553, 578, 586, 893
FaqI	GGGAC	4 cut(s)	600, 986, 1296, 1309
FatI	CATG	6 cut(s)	69, 470, 549, 574, 582, 889
FauI	CCCGC	2 cut(s)	1100, 1321
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	6 cut(s)	410, 468, 1011, 1359, 1526, 1563
FokI	GGATG	4 cut(s)	69, 188, 248, 278
Fsp4HI	GCNGC	6 cut(s)	410, 468, 1011, 1359, 1526, 1563
FspBI	CTAG	5 cut(s)	336, 464, 627, 806, 1349
GlaI	GCGC	4 cut(s)	605, 945, 962, 1456
GluI	GCNGC	6 cut(s)	410, 468, 1011, 1359, 1526, 1563
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	3 cut(s)	1143, 1244, 1374
HaeIII	GGCC	1 cut(s)	1366
HgaI	GACGC	1 cut(s)	1472
HhaI	GCGC	4 cut(s)	606, 946, 963, 1457
Hin1I	GRCGYC	2 cut(s)	17, 1483
Hin1II	CATG	6 cut(s)	73, 474, 553, 578, 586, 893
Hin6I	GCGC	4 cut(s)	604, 944, 961, 1455
HinP1I	GCGC	4 cut(s)	604, 944, 961, 1455
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HinfI	GANTC	4 cut(s)	134, 1244, 1391, 1417
HphI	GGTGA	5 cut(s)	658, 781, 876, 1072, 1579
Hpy166II	GTNNAC	2 cut(s)	844, 1411
Hpy188I	TCNGA	5 cut(s)	49, 1336, 1402, 1430, 1447
Hpy188III	TCNNGA	6 cut(s)	131, 263, 539, 1160, 1467, 1487
Hpy8I	GTNNAC	2 cut(s)	844, 1411
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	236, 380, 682, 1484
HpyCH4III	ACNGT	5 cut(s)	425, 646, 977, 1185, 1385
HpyCH4IV	ACGT	3 cut(s)	17, 840, 1407
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 943, 992, 1001, 1010, 1358, 1514
HpyF3I	CTNAG	5 cut(s)	136, 438, 684, 1035, 1291
HpySE526I	ACGT	3 cut(s)	17, 840, 1407
Hsp92I	GRCGYC	2 cut(s)	17, 1483
Hsp92II	CATG	6 cut(s)	73, 474, 553, 578, 586, 893
HspAI	GCGC	4 cut(s)	604, 944, 961, 1455
Ksp22I	TGATCA	1 cut(s)	127
KspI	CCGCGG	1 cut(s)	1502
Kzo9I	GATC	4 cut(s)	127, 541, 691, 835
LmnI	GCTCC	3 cut(s)	795, 1355, 1522
Lsp1109I	GCAGC	6 cut(s)	396, 479, 997, 1370, 1512, 1574
LweI	GCATC	4 cut(s)	91, 259, 443, 821
MaeI	CTAG	5 cut(s)	336, 464, 627, 806, 1349
MaeII	ACGT	3 cut(s)	17, 840, 1407
MaeIII	GTNAC	6 cut(s)	331, 568, 773, 859, 882, 947
MalI	GATC	4 cut(s)	129, 543, 693, 837
MboI	GATC	4 cut(s)	127, 541, 691, 835
MboII	GAAGA	8 cut(s)	167, 258, 378, 758, 979, 1033, 1109, 1417
MflI	RGATCY	1 cut(s)	691
MlsI	TGGCCA	1 cut(s)	1366
MluNI	TGGCCA	1 cut(s)	1366
MlyI	GAGTC	3 cut(s)	128, 1400, 1426
MmeI	TCCRAC	1 cut(s)	1032
Mox20I	TGGCCA	1 cut(s)	1366
Mph1103I	ATGCAT	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	1366
MseI	TTAA	5 cut(s)	6, 735, 801, 894, 1535
MslI	CAYNNNNRTG	3 cut(s)	558, 594, 782
Msp20I	TGGCCA	1 cut(s)	1366
MspA1I	CMGCKG	4 cut(s)	140, 1501, 1525, 1565
Mva1269I	GAATGC	1 cut(s)	553
MvnI	CGCG	3 cut(s)	946, 1455, 1501
MwoI	GCNNNNNNNGC	7 cut(s)	10, 943, 992, 1001, 1010, 1358, 1514
NdeII	GATC	4 cut(s)	127, 541, 691, 835
NheI	GCTAGC	1 cut(s)	1348
NlaIII	CATG	6 cut(s)	73, 474, 553, 578, 586, 893
NmuCI	GTSAC	4 cut(s)	773, 859, 882, 947
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	2 cut(s)	474, 893
PaeI	GCATGC	1 cut(s)	474
PciI	ACATGT	1 cut(s)	889
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	1244
PflMI	CCANNNNNTGG	2 cut(s)	1166, 1387
PkrI	GCNGC	6 cut(s)	411, 469, 1012, 1360, 1527, 1564
PleI	GAGTC	3 cut(s)	128, 1399, 1425
PpsI	GAGTC	3 cut(s)	128, 1399, 1425
PscI	ACATGT	1 cut(s)	889
PshAI	GACNNNNGTC	1 cut(s)	1416
PspFI	CCCAGC	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	115, 421
PsuI	RGATCY	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	3 cut(s)	293, 1085, 1545
RsaNI	GTAC	3 cut(s)	292, 1084, 1544
RseI	CAYNNNNRTG	3 cut(s)	558, 594, 782
SacII	CCGCGG	1 cut(s)	1502
SaqAI	TTAA	5 cut(s)	6, 735, 801, 894, 1535
SatI	GCNGC	6 cut(s)	410, 468, 1011, 1359, 1526, 1563
Sau3AI	GATC	4 cut(s)	127, 541, 691, 835
Sau96I	GGNCC	2 cut(s)	115, 421
SchI	GAGTC	3 cut(s)	128, 1400, 1426
SfaNI	GCATC	4 cut(s)	91, 259, 443, 821
Sfr303I	CCGCGG	1 cut(s)	1502
SgrBI	CCGCGG	1 cut(s)	1502
SinI	GGWCC	2 cut(s)	115, 421
SmiMI	CAYNNNNRTG	3 cut(s)	558, 594, 782
SmlI	CTYRAG	2 cut(s)	91, 989
SmoI	CTYRAG	2 cut(s)	91, 989
SphI	GCATGC	1 cut(s)	474
SsiI	CCGC	9 cut(s)	230, 1013, 1107, 1314, 1499, 1501, 1508, 1523, 1565
SspMI	CTAG	5 cut(s)	336, 464, 627, 806, 1349
StyI	CCWWGG	2 cut(s)	719, 791
TaaI	ACNGT	5 cut(s)	425, 646, 977, 1185, 1385
TaiI	ACGT	3 cut(s)	20, 843, 1410
TaqI	TCGA	2 cut(s)	20, 1095
TatI	WGTACW	1 cut(s)	1543
TfiI	GAWTC	1 cut(s)	1244
Tru1I	TTAA	5 cut(s)	6, 735, 801, 894, 1535
Tru9I	TTAA	5 cut(s)	6, 735, 801, 894, 1535
TscAI	CASTG	4 cut(s)	520, 688, 982, 1200
TseFI	GTSAC	4 cut(s)	773, 859, 882, 947
TseI	GCWGC	6 cut(s)	409, 467, 1010, 1358, 1525, 1562
Tsp45I	GTSAC	4 cut(s)	773, 859, 882, 947
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	4 cut(s)	520, 688, 982, 1200
Van91I	CCANNNNNTGG	2 cut(s)	1166, 1387
VpaK11BI	GGWCC	2 cut(s)	115, 421
XapI	RAATTY	5 cut(s)	181, 251, 518, 1111, 1238
XceI	RCATGY	2 cut(s)	474, 893
XspI	CTAG	5 cut(s)	336, 464, 627, 806, 1349
ZraI	GACGTC	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.