Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

30522983 .. 30524872

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAACTTTGAGCATCCCAGTTCGAGTGATTGCCGATACACAGAGGTCCAATCTGCTGATCAGGACTCAGCTGAACCACAACAGGAAGAGAAGGCCAGTTATGGGGATGAGAATTTTACTGCCAAAAGCCATGTTGGGAAAAGTTTTGCAGAATTGACTGCGGAGGATGTAGAAGGAAGAGAATTCGCCACTCTGGAAGATGCCGAAAATTGGTATAGAAAGTATGCAACTGCACTTGGTTTTATGACAAGATTGCAGAGGGTTACTAGAGGGATTGGACGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGACATGGGACACCTCGGTGCAAGGCGCACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTACACGGTGAAAAGCAATGGGGGGTTTGAGTTTGTGGGAGACACTGAGAAGGATCTTTTCAACAAGATAGAGGCAGAGGCAAGGGCCAAATTGTTTAATCAGGGGGAAGAAACTGCACCGATAGTGGAGGTGAGTGACATTACAATGCCACAATTAGTAGGGTTGGGGGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTTATAGCTACGTATCATTGTCACCACATGTTAAAGCGGTTAGTGCCGACACAGCGTCAACATTACTTCGGCAGATTGCTGGTCTGACATCAATAGCAACAGAGCAGTCGCTAAAGGCGCGTGACGAGATTTTGCGCCTGAAGAGGGACAGTGTGAAGGAGCTGGCACTCAAGACAAAGGAAGCTGAAGCTGCGGCTGAGTGTTGGCGAGAGTTGGAATTGGTGAAATCGGCAGATAAATATAGGTACAGAACCATCGAAGAGGTTGGCGGGAATTCTAAAAAGCAGATTACAGAGGATAACTGCAATAGGGGTCAATCTCCAGAGGGTGGTGCTGATATTCAACTTTTATGCTCACTGGGTGGGTGGAAAAGTGGCTTTGCCCCAGACAAAGATATGGAATTTGATTCAAGTAAGCGGAAGAGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

339

Amino Acids

37.94

Weight (kDa)

5.53

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	917
AccII	CGCG	1 cut(s)	709
AciI	CCGC	5 cut(s)	161, 626, 782, 858, 1006
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	4 cut(s)	112, 182, 862, 989
AcuI	CTGAAG	2 cut(s)	749, 795
AdeI	CACNNNGTG	1 cut(s)	950
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	4 cut(s)	102, 210, 733, 917
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	439, 932, 999
AhdI	GACNNNNNGTC	1 cut(s)	643
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	5 cut(s)	71, 597, 751, 773, 779
AluI	AGCT	5 cut(s)	71, 597, 751, 773, 779
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	2 cut(s)	93, 462
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	4 cut(s)	112, 182, 862, 989
AspLEI	GCGC	3 cut(s)	345, 709, 726
AspS9I	GGNCC	2 cut(s)	46, 462
AsuHPI	GGTGA	4 cut(s)	397, 520, 603, 823
AvaII	GGWCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	1 cut(s)	851
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	2 cut(s)	267, 366
BisI	GCNGC	2 cut(s)	780, 783
BlsI	GCNGC	2 cut(s)	781, 784
Bme18I	GGWCC	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	46, 462
BmrI	ACTGGG	2 cut(s)	12, 956
BmsI	GCATC	3 cut(s)	22, 190, 548
BmuI	ACTGGG	2 cut(s)	12, 956
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	331, 578
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 210, 733, 917
Bse1I	ACTGG	3 cut(s)	18, 96, 951
Bse3DI	GCAATG	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	331, 578
BseGI	GGATG	4 cut(s)	13, 112, 172, 553
BseLI	CCNNNNNNNGG	4 cut(s)	102, 210, 733, 917
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	81, 414, 777
BseNI	ACTGG	3 cut(s)	18, 96, 951
BseXI	GCAGC	1 cut(s)	766
BsgI	GTGCAG	2 cut(s)	216, 477
Bsh1236I	CGCG	1 cut(s)	709
BshFI	GGCC	2 cut(s)	95, 464
BslFI	GGGAC	2 cut(s)	339, 749
BslI	CCNNNNNNNGG	4 cut(s)	102, 210, 733, 917
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	339, 749
BsnI	GGCC	2 cut(s)	95, 464
Bsp143I	GATC	3 cut(s)	58, 430, 562
BspACI	CCGC	5 cut(s)	161, 626, 782, 858, 1006
BspANI	GGCC	2 cut(s)	95, 464
BspCNI	CTCAG	3 cut(s)	80, 415, 778
BspFNI	CGCG	1 cut(s)	709
BspPI	GGATC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	18, 96, 951
BssECI	CCNNGG	2 cut(s)	331, 578
BssMI	GATC	3 cut(s)	58, 430, 562
Bst4CI	ACNGT	2 cut(s)	385, 740
Bst6I	CTCTTC	5 cut(s)	81, 172, 725, 843, 1004
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	3 cut(s)	67, 423, 786
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	4 cut(s)	13, 112, 172, 553
BstFNI	CGCG	1 cut(s)	709
BstHHI	GCGC	3 cut(s)	345, 709, 726
BstKTI	GATC	3 cut(s)	61, 433, 565
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	3 cut(s)	58, 430, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	632, 641, 706, 779, 1012
BstNSI	RCATGY	1 cut(s)	620
BstSNI	TACGTA	1 cut(s)	601
BstUI	CGCG	1 cut(s)	709
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	95, 464
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	4 cut(s)	13, 112, 172, 553
BtsIMutI	CAGTG	3 cut(s)	420, 745, 944
Cac8I	GCNNGC	1 cut(s)	753
CfoI	GCGC	3 cut(s)	345, 709, 726
Cfr13I	GGNCC	2 cut(s)	46, 462
CseI	GACGC	2 cut(s)	288, 633
Csp6I	GTAC	1 cut(s)	835
CviAII	CATG	3 cut(s)	131, 322, 617
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	3 cut(s)	67, 423, 786
DpnI	GATC	3 cut(s)	60, 432, 564
DpnII	GATC	3 cut(s)	58, 430, 562
DraIII	CACNNNGTG	1 cut(s)	950
DriI	GACNNNNNGTC	1 cut(s)	643
Eam1104I	CTCTTC	5 cut(s)	81, 172, 725, 843, 1004
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	5 cut(s)	81, 172, 725, 843, 1004
Eco105I	TACGTA	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	749, 795
EcoRI	GAATTC	2 cut(s)	182, 862
FaeI	CATG	3 cut(s)	134, 325, 620
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	2 cut(s)	339, 749
FatI	CATG	3 cut(s)	130, 321, 616
FauI	CCCGC	1 cut(s)	851
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	780, 783
FokI	GGATG	3 cut(s)	119, 179, 560
Fsp4HI	GCNGC	2 cut(s)	780, 783
FspBI	CTAG	2 cut(s)	267, 366
GlaI	GCGC	3 cut(s)	344, 708, 725
GluI	GCNGC	2 cut(s)	780, 783
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	95, 464
HgaI	GACGC	2 cut(s)	288, 633
HhaI	GCGC	3 cut(s)	345, 709, 726
Hin1II	CATG	3 cut(s)	134, 325, 620
Hin6I	GCGC	3 cut(s)	343, 707, 724
HinP1I	GCGC	3 cut(s)	343, 707, 724
HincII	GTYRAC	2 cut(s)	571, 648
HindII	GTYRAC	2 cut(s)	571, 648
HinfI	GANTC	2 cut(s)	65, 995
HphI	GGTGA	4 cut(s)	397, 520, 603, 823
Hpy166II	GTNNAC	2 cut(s)	571, 648
Hpy188I	TCNGA	1 cut(s)	675
Hpy188III	TCNNGA	4 cut(s)	62, 194, 760, 911
Hpy8I	GTNNAC	2 cut(s)	571, 648
HpyAV	CCTTC	4 cut(s)	85, 167, 421, 739
HpyCH4III	ACNGT	2 cut(s)	385, 740
HpyCH4IV	ACGT	2 cut(s)	567, 600
HpyCH4V	TGCA	7 cut(s)	149, 227, 233, 256, 338, 494, 894
HpyF10VI	GCNNNNNNNGC	5 cut(s)	632, 641, 706, 779, 1012
HpyF3I	CTNAG	3 cut(s)	67, 423, 786
HpySE526I	ACGT	2 cut(s)	567, 600
Hsp92II	CATG	3 cut(s)	134, 325, 620
HspAI	GCGC	3 cut(s)	343, 707, 724
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 430, 562
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	3 cut(s)	22, 190, 548
MaeI	CTAG	2 cut(s)	267, 366
MaeII	ACGT	2 cut(s)	567, 600
MaeIII	GTNAC	5 cut(s)	262, 512, 586, 609, 710
MalI	GATC	3 cut(s)	60, 432, 564
MboI	GATC	3 cut(s)	58, 430, 562
MboII	GAAGA	8 cut(s)	98, 189, 209, 309, 329, 497, 742, 860
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	9 cut(s)	112, 152, 182, 208, 467, 530, 806, 862, 989
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	783
MseI	TTAA	2 cut(s)	474, 621
MslI	CAYNNNNRTG	2 cut(s)	333, 521
MspA1I	CMGCKG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	709
MwoI	GCNNNNNNNGC	5 cut(s)	632, 641, 706, 779, 1012
NdeII	GATC	3 cut(s)	58, 430, 562
NlaIII	CATG	3 cut(s)	134, 325, 620
NmuCI	GTSAC	4 cut(s)	512, 586, 609, 710
NspI	RCATGY	1 cut(s)	620
OliI	CACNNNNGTG	1 cut(s)	333
PciI	ACATGT	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	995
PflMI	CCANNNNNTGG	1 cut(s)	917
PkrI	GCNGC	2 cut(s)	781, 784
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	601
PscI	ACATGT	1 cut(s)	616
PspPI	GGNCC	2 cut(s)	46, 462
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
RseI	CAYNNNNRTG	2 cut(s)	333, 521
SaqAI	TTAA	2 cut(s)	474, 621
SatI	GCNGC	2 cut(s)	780, 783
Sau3AI	GATC	3 cut(s)	58, 430, 562
Sau96I	GGNCC	2 cut(s)	46, 462
SchI	GAGTC	1 cut(s)	59
SfaNI	GCATC	3 cut(s)	22, 190, 548
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	333, 521
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SnaBI	TACGTA	1 cut(s)	601
Sse9I	AATT	9 cut(s)	112, 152, 182, 208, 467, 530, 806, 862, 989
SsiI	CCGC	5 cut(s)	161, 626, 782, 858, 1006
SspMI	CTAG	2 cut(s)	267, 366
TaaI	ACNGT	2 cut(s)	385, 740
TaiI	ACGT	2 cut(s)	570, 603
TaqI	TCGA	2 cut(s)	23, 846
TasI	AATT	9 cut(s)	112, 152, 182, 208, 467, 530, 806, 862, 989
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	1 cut(s)	995
Tru1I	TTAA	2 cut(s)	474, 621
Tru9I	TTAA	2 cut(s)	474, 621
TscAI	CASTG	3 cut(s)	427, 745, 951
TseFI	GTSAC	4 cut(s)	512, 586, 609, 710
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	4 cut(s)	512, 586, 609, 710
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	427, 745, 951
Van91I	CCANNNNNTGG	1 cut(s)	917
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	4 cut(s)	112, 182, 862, 989
XceI	RCATGY	1 cut(s)	620
XspI	CTAG	2 cut(s)	267, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.