Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

3802399 .. 3804813

Gene Structure 2415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGGCTTTCGAGACCGCAGAGTCCATTTATCTTTCAGACGACACCGAAGAGGCCATTCATCTTTCCGACACCGAAGATAACGAAACTGACGAGCCTATTGACCTTGAAGTGTCTTGGGAGGATGTCTTAGACTACCGAAAGTTGACAGTTGAAGATGGAGCAGGCCACAATATCCAGTCATGTGGGAAAAGGAAGGAGAAAGAATGGGAAGCGGTAGCGCAGCAAAGTGTGGGAGAAGACAACCCACCTTCTGTATCCACTCCTGCAAAGAAAGTTTATCATTGTGGTAAGTGCACAGGGCCTGGCCACACAACACGATCATGCAAAAACGCTCCGGCACCCAGTAACAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

4.48

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	340
AciI	CCGC	2 cut(s)	18, 215
AcoI	YGGCCR	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	110, 155
AjnI	CCWGG	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	54, 166, 302, 307
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	268
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	306
BmrI	ACTGGG	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	178, 345
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	178, 345
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	4 cut(s)	56, 168, 304, 309
BshNI	GGYRCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	4 cut(s)	56, 168, 304, 309
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	320
BspACI	CCGC	2 cut(s)	18, 215
BspANI	GGCC	4 cut(s)	56, 168, 304, 309
BspLI	GGNNCC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	178, 345
BssMI	GATC	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	151, 353
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	323
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	4 cut(s)	56, 168, 304, 309
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	302
CviAII	CATG	2 cut(s)	183, 324
CviJI	RGCY	6 cut(s)	8, 56, 97, 168, 304, 309
CviKI_1	RGCY	6 cut(s)	8, 56, 97, 168, 304, 309
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	186, 327
FaiI	YATR	2 cut(s)	184, 325
FatI	CATG	2 cut(s)	182, 323
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	224
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	56, 168, 304, 309
HapII	CCGG	1 cut(s)	338
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	186, 327
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	338
Hpy166II	GTNNAC	2 cut(s)	147, 297
Hpy188I	TCNGA	2 cut(s)	40, 70
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	2 cut(s)	147, 297
HpyAV	CCTTC	2 cut(s)	190, 261
HpyCH4III	ACNGT	2 cut(s)	151, 353
HpyCH4V	TGCA	3 cut(s)	269, 297, 327
HpyF3I	CTNAG	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	186, 327
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	161, 340
LpnPI	CCDG	7 cut(s)	150, 191, 279, 285, 291, 318, 351
Lsp1109I	GCAGC	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MboII	GAAGA	4 cut(s)	62, 89, 167, 251
MhlI	GDGCHC	1 cut(s)	299
MlsI	TGGCCA	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	46, 115
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	322
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	186, 327
NlaIV	GGNNCC	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	322
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	2 cut(s)	108, 253
SmiMI	CAYNNNNRTG	1 cut(s)	322
SsiI	CCGC	2 cut(s)	18, 215
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	151, 353
TaqI	TCGA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.