Rorug07G0259000

translation initiation factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000202
Physical Location & Seq
Forward (+)
24273862 .. 24279521
5660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0259000.1

Sequence Viewer

Length: 540 bp
ATGCAGAAATTGGGTGATTACAAGCTGCCTCAGTTCTTCAATTATCCTCCCTACTTCACGTTACAACCAGTAAGGGATACGCGTGAGAAGCAGATACAACTATGGAAGGAGCTTATTCTTGATTACTGTAGAACACAGAAGATCTTTGTAATTGGACTGGAAGAAGACTTTCCTCTTTTTTCAAATCCTGTGATTGAAAGATCTCTCAGTCATGAAGCCAGGGAAGCATTCCTCTCAATTTTGGTTTCAGATGGTCGTGCAGAATGGTTAGATAAAAGGCATGGGAAATGTCTAATCCTCTGGCACAGGATTCAAGAGTGGGCTAACATAATTCTGAACTTCGTAAAAGAAAATGGATTGGAGGACAGCGTTATGACTGTTGAGGAAATACGTTCTGGGATAGAATCAAGAGGAACAGAGCTTCACGGTATTGACCGCACAATTCTGATGCGAGCTCTAAAACTACTAGAACAGAAGGGTAAGCTTGCAATCTTCAAGGGGACTACAGCTGATGATGAGGGTGTGAAATTCTCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05160 map03013 map05160
Pfam Domains
Protein Families
PCI

Protein Analysis

179

Amino Acids

20.91

Weight (kDa)

6.12

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ESCRT-II PF05871 12 - 145 5.2e-47 ESCRT-II complex subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 436
AcsI RAATTY 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 5 cut(s) 40, 183, 197, 314, 496
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 6 cut(s) 25, 112, 421, 455, 484, 509
AluI AGCT 6 cut(s) 25, 112, 421, 455, 484, 509
Alw21I GWGCWC 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 12
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 220
BciVI GTATCC 1 cut(s) 70
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 2 cut(s) 127, 504
BfuI GTATCC 1 cut(s) 70
BglII AGATCT 2 cut(s) 141, 200
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 68, 162
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 219
BseMII CTCAG 2 cut(s) 44, 220
BseNI ACTGG 2 cut(s) 68, 162
BseXI GCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 457
BslFI GGGAC 1 cut(s) 514
BsmFI GGGAC 1 cut(s) 514
BsmI GAATGC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 2 cut(s) 141, 200
BspACI CCGC 1 cut(s) 436
BspCNI CTCAG 2 cut(s) 43, 219
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 211
BsrI ACTGG 2 cut(s) 68, 162
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 141, 200
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 3 cut(s) 128, 379, 428
BstC8I GCNNGC 2 cut(s) 453, 486
BstDEI CTNAG 2 cut(s) 30, 206
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 2 cut(s) 144, 203
BstMBI GATC 2 cut(s) 141, 200
BstMWI GCNNNNNNNGC 2 cut(s) 88, 224
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 2 cut(s) 127, 504
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 141, 200
BstYI RGATCY 2 cut(s) 141, 200
BsuI GTATCC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 453, 486
CciI TCATGA 1 cut(s) 211
CviAII CATG 2 cut(s) 212, 281
CviJI RGCY 8 cut(s) 25, 112, 218, 323, 421, 455, 484, 509
CviKI_1 RGCY 8 cut(s) 25, 112, 218, 323, 421, 455, 484, 509
DdeI CTNAG 2 cut(s) 30, 206
DpnI GATC 2 cut(s) 143, 202
DpnII GATC 2 cut(s) 141, 200
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 457
FaeI CATG 2 cut(s) 215, 284
FaiI YATR 5 cut(s) 103, 213, 282, 329, 374
FaqI GGGAC 1 cut(s) 514
FatI CATG 2 cut(s) 211, 280
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 467
GluI GCNGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 215, 284
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 2 cut(s) 310, 404
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 4 cut(s) 250, 336, 447, 539
Hpy188III TCNNGA 4 cut(s) 119, 212, 314, 408
HpyAV CCTTC 2 cut(s) 100, 469
HpyCH4III ACNGT 3 cut(s) 128, 379, 428
HpyCH4IV ACGT 2 cut(s) 59, 391
HpyCH4V TGCA 3 cut(s) 4, 260, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 224
HpyF3I CTNAG 2 cut(s) 30, 206
HpySE526I ACGT 2 cut(s) 59, 391
Hsp92II CATG 2 cut(s) 215, 284
Kzo9I GATC 2 cut(s) 141, 200
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 81, 143, 201, 205, 232, 286, 292, 381
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 1 cut(s) 438
MaeI CTAG 1 cut(s) 467
MaeII ACGT 2 cut(s) 59, 391
MaeIII GTNAC 1 cut(s) 60
MalI GATC 2 cut(s) 143, 202
MboI GATC 2 cut(s) 141, 200
MboII GAAGA 5 cut(s) 28, 151, 173, 176, 484
MflI RGATCY 2 cut(s) 141, 200
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 7 cut(s) 8, 40, 150, 237, 330, 441, 527
MluI ACGCGT 1 cut(s) 80
MnlI CCTC 9 cut(s) 39, 57, 183, 242, 308, 355, 376, 404, 511
MroXI GAANNNNTTC 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 220
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 88, 224
NdeII GATC 2 cut(s) 141, 200
NlaIII CATG 2 cut(s) 215, 284
PagI TCATGA 1 cut(s) 211
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 310, 404
PkrI GCNGC 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PsuI RGATCY 2 cut(s) 141, 200
PvuII CAGCTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 457
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 141, 200
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 457
SetI ASST 8 cut(s) 27, 62, 114, 394, 423, 457, 486, 511
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 2 cut(s) 127, 504
Sse9I AATT 7 cut(s) 8, 40, 150, 237, 330, 441, 527
SsiI CCGC 1 cut(s) 436
SspMI CTAG 1 cut(s) 467
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 3 cut(s) 128, 379, 428
TaiI ACGT 2 cut(s) 62, 394
TasI AATT 7 cut(s) 8, 40, 150, 237, 330, 441, 527
TfiI GAWTC 2 cut(s) 310, 404
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 228
XapI RAATTY 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.