RchiOBHm_Chr2g0151891

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000202
Physical Location & Seq
Forward (+)
69412473 .. 69414473
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52106

Sequence Viewer

Length: 1098 bp
ATGGCGGCAGCTGATGTTGCTCAATTTCTGTGGAAAAAGTTCTTGCGGTCTCTAGTGGACCCAGAGTCTGAATTATCAGGTTCTATGAGTCTCTTTTCTTACTTTGAAGCAATCAAACATATCTTAGTAAACACGCAGATAATTCCATTTTCTTTAGAAATGTTGATGCCATGGAATGCATCATGGGAAGTGAATACTTATGTTCGGGCAAATACTTATCTCTTGGAGCTCAACTATGCACTGGCAGAGTGCCAAATCTTTGCAAAGGAGTGCAGGGAGCTTAAAAAGAAGATTTTACCGTTGAATCCTTCCGCTGTTTTTTTCATCCTACAGATGAAGAAGAGGCTGACGGCACTGAGAAGGAAGTTTGAGACTTTGGTGCTTGAGAGCCCATCAATACCTACTTCTATCTTGAGGGAGCGAAAAGGGAGAAACTCTGTGGAATGTTTGGGATTTACTGAGAAGGATATAGTGGTGTTAAAGAAGAATTCAGAAGAAACTGTGGTGTTTTCTGTTGCAATGAATTCAGAAGACTTTACAACTATGGTTGAGCTCTTGGGCTTGCTTGGTGGCTCTGCAGCTGGAATTGGATTTACTTCCATTGGGATTGTCGGCATGGCTCGTGTGGTTAAGTCCATTTTAGTACAAAGACTTGTGGAAGAGACAGCTGTGCTCTCTGAGTTTTCTCCTATCATTCAGTTATGCTTGTCTGATATAATACAAGAACATAATGTTGTAGACAACACTAATAGTGCCAGTGGGGCCAGCATTAGCATCAGTATTGTGAAACTTATACTTGTAAAGTTGGGGGAGGAGGAGACTGCCGGTATTTCTGGCCTTGAACTTAATTCGCTCTTGGAAAGGCTCAACCACCTTTTATCAGGTAAAAAGTATTTAATTGTGTTGGATGATGTGTGGCATAATATGGAGTTCTATAGGGACCTTGGCTATCAGCTTCGTGATGGTGAGAAATTTGGGGATCGGTTATCTGATGGGTTGCCTAAGGATGGTGGTGGTGCAGTCATTGTGGTTAGTAGGATACCAGAAGTGGCTCTAGATATGGTGGGGATATGCAAAGTACTCTGCATAAGCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

365

Amino Acids

40.47

Weight (kDa)

5.49

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 200 - 321 1.1e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 738
AciI CCGC 4 cut(s) 5, 46, 312, 1092
AclWI GGATC 1 cut(s) 987
AcsI RAATTY 3 cut(s) 487, 523, 971
AfaI GTAC 2 cut(s) 645, 1080
AfiI CCNNNNNNNGG 1 cut(s) 1007
AgsI TTSAA 3 cut(s) 107, 304, 842
AhdI GACNNNNNGTC 1 cut(s) 64
AluBI AGCT 7 cut(s) 11, 229, 280, 553, 581, 668, 955
AluI AGCT 7 cut(s) 11, 229, 280, 553, 581, 668, 955
Alw21I GWGCWC 3 cut(s) 231, 555, 675
Alw26I GTCTC 5 cut(s) 54, 95, 365, 656, 812
AlwI GGATC 1 cut(s) 987
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 762, 835
ApeKI GCWGC 2 cut(s) 8, 578
ApoI RAATTY 3 cut(s) 487, 523, 971
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 3 cut(s) 58, 762, 940
AsuHPI GGTGA 1 cut(s) 977
AvaII GGWCC 2 cut(s) 58, 940
AxyI CCTNAGG 1 cut(s) 1002
BanII GRGCYC 3 cut(s) 231, 392, 555
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 3 cut(s) 231, 555, 675
BbvI GCAGC 2 cut(s) 20, 590
BccI CCATC 4 cut(s) 400, 956, 986, 1001
BceAI ACGGC 1 cut(s) 366
BciVI GTATCC 1 cut(s) 1032
BcoDI GTCTC 5 cut(s) 54, 95, 365, 656, 812
BfaI CTAG 2 cut(s) 53, 1055
BfmI CTRYAG 3 cut(s) 329, 576, 934
BfuI GTATCC 1 cut(s) 1032
BglI GCCNNNNNGGC 1 cut(s) 761
BisI GCNGC 4 cut(s) 6, 9, 579, 1093
BlsI GCNGC 4 cut(s) 7, 10, 580, 1094
BmcAI AGTACT 1 cut(s) 1080
Bme18I GGWCC 2 cut(s) 58, 940
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 3 cut(s) 58, 762, 940
BmiI GGNNCC 3 cut(s) 60, 763, 941
BmsI GCATC 3 cut(s) 156, 188, 783
BpiI GAAGAC 1 cut(s) 537
BpuEI CTTGAG 2 cut(s) 404, 433
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 170, 943
Bsc4I CCNNNNNNNGG 1 cut(s) 1007
Bse118I RCCGGY 1 cut(s) 824
Bse1I ACTGG 2 cut(s) 246, 756
Bse21I CCTNAGG 1 cut(s) 1002
Bse3DI GCAATG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 170, 943
BseGI GGATG 3 cut(s) 324, 913, 1012
BseLI CCNNNNNNNGG 1 cut(s) 1007
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 3 cut(s) 347, 450, 669
BseNI ACTGG 2 cut(s) 246, 756
BseRI GAGGAG 2 cut(s) 827, 830
BseXI GCAGC 2 cut(s) 20, 590
BsgI GTGCAG 2 cut(s) 292, 1038
BshFI GGCC 2 cut(s) 764, 837
BsiHKAI GWGCWC 3 cut(s) 231, 555, 675
BsiSI CCGG 1 cut(s) 825
BslFI GGGAC 1 cut(s) 953
BslI CCNNNNNNNGG 1 cut(s) 1007
BsmAI GTCTC 5 cut(s) 54, 95, 365, 656, 812
BsmFI GGGAC 1 cut(s) 953
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 2 cut(s) 764, 837
Bso31I GGTCTC 1 cut(s) 54
Bsp1286I GDGCHC 4 cut(s) 231, 392, 555, 675
Bsp143I GATC 1 cut(s) 979
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 4 cut(s) 5, 46, 312, 1092
BspANI GGCC 2 cut(s) 764, 837
BspCNI CTCAG 3 cut(s) 348, 451, 670
BspLI GGNNCC 3 cut(s) 60, 763, 941
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 1 cut(s) 987
BspTNI GGTCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 824
BsrI ACTGG 2 cut(s) 246, 756
BssAI RCCGGY 1 cut(s) 824
BssECI CCNNGG 2 cut(s) 170, 943
BssMI GATC 1 cut(s) 979
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 2 cut(s) 170, 943
Bst2BI CACGAG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 300, 502
Bst6I CTCTTC 2 cut(s) 335, 654
BstC8I GCNNGC 2 cut(s) 563, 766
BstDEI CTNAG 5 cut(s) 124, 356, 459, 678, 1002
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 324, 913, 1012
BstKTI GATC 1 cut(s) 982
BstMAI GTCTC 5 cut(s) 54, 95, 365, 656, 812
BstMBI GATC 1 cut(s) 979
BstMWI GCNNNNNNNGC 3 cut(s) 17, 761, 1092
BstSFI CTRYAG 3 cut(s) 329, 576, 934
BstV1I GCAGC 2 cut(s) 20, 590
BstV2I GAAGAC 1 cut(s) 537
Bsu36I CCTNAGG 1 cut(s) 1002
BsuI GTATCC 1 cut(s) 1032
BsuRI GGCC 2 cut(s) 764, 837
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 3 cut(s) 324, 913, 1012
BtsIMutI CAGTG 3 cut(s) 239, 353, 763
Cac8I GCNNGC 2 cut(s) 563, 766
CaiI CAGNNNCTG 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 824
Cfr13I GGNCC 3 cut(s) 58, 762, 940
Csp6I GTAC 2 cut(s) 644, 1079
CspCI CAANNNNNGTGG 2 cut(s) 11, 46
CviAII CATG 3 cut(s) 171, 183, 616
CviQI GTAC 2 cut(s) 644, 1079
DdeI CTNAG 5 cut(s) 124, 356, 459, 678, 1002
DpnI GATC 1 cut(s) 981
DpnII GATC 1 cut(s) 979
DriI GACNNNNNGTC 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 335, 654
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 2 cut(s) 335, 654
Ecl136II GAGCTC 2 cut(s) 229, 553
Eco130I CCWWGG 2 cut(s) 170, 943
Eco24I GRGCYC 3 cut(s) 231, 392, 555
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 58, 940
Eco53kI GAGCTC 2 cut(s) 229, 553
Eco81I CCTNAGG 1 cut(s) 1002
EcoICRI GAGCTC 2 cut(s) 229, 553
EcoO109I RGGNCCY 1 cut(s) 940
EcoRI GAATTC 2 cut(s) 487, 523
EcoT14I CCWWGG 2 cut(s) 170, 943
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 3 cut(s) 231, 392, 555
ErhI CCWWGG 2 cut(s) 170, 943
FaeI CATG 3 cut(s) 174, 186, 619
FaqI GGGAC 1 cut(s) 953
FatI CATG 3 cut(s) 170, 182, 615
FblI GTMKAC 1 cut(s) 738
Fnu4HI GCNGC 4 cut(s) 6, 9, 579, 1093
FokI GGATG 3 cut(s) 311, 920, 1019
FriOI GRGCYC 3 cut(s) 231, 392, 555
Fsp4HI GCNGC 4 cut(s) 6, 9, 579, 1093
FspBI CTAG 2 cut(s) 53, 1055
GluI GCNGC 4 cut(s) 6, 9, 579, 1093
HaeIII GGCC 2 cut(s) 764, 837
HapII CCGG 1 cut(s) 825
Hin1II CATG 3 cut(s) 174, 186, 619
HinfI GANTC 3 cut(s) 65, 88, 304
HpaII CCGG 1 cut(s) 825
HphI GGTGA 1 cut(s) 977
Hpy166II GTNNAC 3 cut(s) 58, 130, 739
Hpy188I TCNGA 6 cut(s) 70, 493, 529, 679, 712, 991
Hpy188III TCNNGA 3 cut(s) 412, 959, 1055
Hpy8I GTNNAC 3 cut(s) 58, 130, 739
HpyAV CCTTC 3 cut(s) 318, 354, 457
HpyCH4III ACNGT 2 cut(s) 300, 502
HpyCH4V TGCA 9 cut(s) 179, 239, 263, 273, 518, 578, 1019, 1074, 1086
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 761, 1092
HpyF3I CTNAG 5 cut(s) 124, 356, 459, 678, 1002
Hsp92II CATG 3 cut(s) 174, 186, 619
Kzo9I GATC 1 cut(s) 979
LmnI GCTCC 3 cut(s) 226, 277, 418
Lsp1109I GCAGC 2 cut(s) 20, 590
LweI GCATC 3 cut(s) 156, 188, 783
MaeI CTAG 2 cut(s) 53, 1055
MalI GATC 1 cut(s) 981
MboI GATC 1 cut(s) 979
MboII GAAGA 7 cut(s) 301, 349, 352, 496, 506, 542, 671
MhlI GDGCHC 4 cut(s) 231, 392, 555, 675
MluCI AATT 9 cut(s) 23, 71, 141, 487, 523, 585, 847, 897, 971
MlyI GAGTC 2 cut(s) 74, 97
MmeI TCCRAC 1 cut(s) 885
MnlI CCTC 4 cut(s) 336, 408, 805, 808
Mph1103I ATGCAT 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 5 cut(s) 282, 479, 630, 846, 896
MspA1I CMGCKG 4 cut(s) 11, 314, 581, 668
MspI CCGG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 17, 761, 1092
NcoI CCATGG 1 cut(s) 170
NdeII GATC 1 cut(s) 979
NlaIII CATG 3 cut(s) 174, 186, 619
NlaIV GGNNCC 3 cut(s) 60, 763, 941
NsiI ATGCAT 1 cut(s) 181
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 4 cut(s) 7, 10, 580, 1094
PleI GAGTC 2 cut(s) 73, 96
PpsI GAGTC 2 cut(s) 73, 96
PpuMI RGGWCCY 1 cut(s) 940
Psp124BI GAGCTC 2 cut(s) 231, 555
Psp5II RGGWCCY 1 cut(s) 940
PspN4I GGNNCC 3 cut(s) 60, 763, 941
PspPI GGNCC 3 cut(s) 58, 762, 940
PspPPI RGGWCCY 1 cut(s) 940
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 68
PvuII CAGCTG 3 cut(s) 11, 581, 668
RsaI GTAC 2 cut(s) 645, 1080
RsaNI GTAC 2 cut(s) 644, 1079
SacI GAGCTC 2 cut(s) 231, 555
SaqAI TTAA 5 cut(s) 282, 479, 630, 846, 896
SatI GCNGC 4 cut(s) 6, 9, 579, 1093
Sau3AI GATC 1 cut(s) 979
Sau96I GGNCC 3 cut(s) 58, 762, 940
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 2 cut(s) 74, 97
SduI GDGCHC 4 cut(s) 231, 392, 555, 675
SfaNI GCATC 3 cut(s) 156, 188, 783
SfcI CTRYAG 3 cut(s) 329, 576, 934
SinI GGWCC 2 cut(s) 58, 940
SmlI CTYRAG 2 cut(s) 383, 412
SmoI CTYRAG 2 cut(s) 383, 412
Sse9I AATT 9 cut(s) 23, 71, 141, 487, 523, 585, 847, 897, 971
SsiI CCGC 4 cut(s) 5, 46, 312, 1092
SspMI CTAG 2 cut(s) 53, 1055
SstI GAGCTC 2 cut(s) 231, 555
StyI CCWWGG 2 cut(s) 170, 943
TaaI ACNGT 2 cut(s) 300, 502
TasI AATT 9 cut(s) 23, 71, 141, 487, 523, 585, 847, 897, 971
TatI WGTACW 2 cut(s) 643, 1078
TauI GCSGC 2 cut(s) 8, 1095
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 5 cut(s) 282, 479, 630, 846, 896
Tru9I TTAA 5 cut(s) 282, 479, 630, 846, 896
TscAI CASTG 3 cut(s) 246, 360, 763
TseI GCWGC 2 cut(s) 8, 578
TspDTI ATGAA 3 cut(s) 313, 350, 536
TspRI CASTG 3 cut(s) 246, 360, 763
VpaK11BI GGWCC 2 cut(s) 58, 940
XapI RAATTY 3 cut(s) 487, 523, 971
XbaI TCTAGA 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 53, 1055
ZrmI AGTACT 1 cut(s) 1080
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.