Rmu_co8278997.1_g000001

Diacylglycerol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8278997.1
OG0000202
Physical Location & Seq
Forward (+)
1 .. 627
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8278997.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
gttggaattgctggagtgggtaagaccaccctggttcagaaggttttggagagcaaggaggtgaagcagaagtttaatcatatactttggttacccttttcgttgagtgaggaagaagatcaatatagtaagtttagctttgagacacgtatctttgatagtaatggccaaaccatagaggcgaggattgttggccttgataagcttctggaaaggctaacccgccagctgttatcggataaatgctatttaattgtgttggatgatgtatgtcatcggcacattaacattatggaacgcttatgcagcggattgcccaagcataatggtggtgttgtcattgtcactactaggttgaaggaagtggctcaaaagctggggaagcaacgtagattgcaactggttcatcttaagcctctggacagagagatttgcgggcgtataattgaggagcaggcgtattccagcagaaaaagttcaaacctctcacgtgatggagctacaagaaagatggaggaactcaaggatcagtgccatggtctaccgttggttgcgaagacgatagcaaatgcttttgcagtgggatttggaggcaacagatttgaagagagagatggagatcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAGK_acc DAGK_cat NB-ARC

Protein Analysis

208

Amino Acids

23.6

Weight (kDa)

8.95

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 541
AciI CCGC 3 cut(s) 223, 309, 435
AclWI GGATC 1 cut(s) 534
AcoI YGGCCR 1 cut(s) 166
AcvI CACGTG 1 cut(s) 491
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 3 cut(s) 358, 480, 605
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 5 cut(s) 138, 205, 229, 376, 500
AluI AGCT 5 cut(s) 138, 205, 229, 376, 500
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 534
AoxI GGCC 2 cut(s) 166, 193
ApeKI GCWGC 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 73
BalI TGGCCA 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 563
BbvI GCAGC 1 cut(s) 318
BccI CCATC 3 cut(s) 488, 505, 608
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 351, 625
BfrI CTTAAG 1 cut(s) 410
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 506
BsaAI YACGTR 2 cut(s) 149, 491
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 30, 535
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bse1I ACTGG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 30, 535
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 618
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 318
BseYI CCCAGC 1 cut(s) 376
BshFI GGCC 2 cut(s) 168, 195
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 168, 195
Bsp143I GATC 3 cut(s) 118, 526, 619
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 3 cut(s) 223, 309, 435
BspANI GGCC 2 cut(s) 168, 195
BspPI GGATC 1 cut(s) 534
BspTI CTTAAG 1 cut(s) 410
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 30, 535
BssMI GATC 3 cut(s) 118, 526, 619
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 600
BstAFI CTTAAG 1 cut(s) 410
BstBAI YACGTR 2 cut(s) 149, 491
BstC8I GCNNGC 3 cut(s) 227, 437, 456
BstDSI CCRYGG 1 cut(s) 535
BstEII GGTNACC 1 cut(s) 90
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 3 cut(s) 121, 529, 622
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 118, 526, 619
BstMWI GCNNNNNNNGC 2 cut(s) 306, 382
BstNI CCWGG 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 168, 195
BtgI CCRYGG 1 cut(s) 535
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 2 cut(s) 536, 585
Cac8I GCNNGC 3 cut(s) 227, 437, 456
CviAII CATG 1 cut(s) 536
DpnI GATC 3 cut(s) 120, 528, 621
DpnII GATC 3 cut(s) 118, 526, 619
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 1 cut(s) 535
Eco72I CACGTG 1 cut(s) 491
Eco91I GGTNACC 1 cut(s) 90
EcoO65I GGTNACC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 535
FaeI CATG 1 cut(s) 539
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 1 cut(s) 535
FauI CCCGC 2 cut(s) 230, 428
FblI GTMKAC 1 cut(s) 541
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 307
FspBI CTAG 2 cut(s) 351, 625
GluI GCNGC 1 cut(s) 307
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 168, 195
Hin1II CATG 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 203
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 2 cut(s) 39, 238
Hpy188III TCNNGA 2 cut(s) 209, 419
Hpy8I GTNNAC 1 cut(s) 542
HpyAV CCTTC 2 cut(s) 34, 352
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4IV ACGT 3 cut(s) 148, 388, 490
HpyCH4V TGCA 3 cut(s) 306, 397, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 382
HpySE526I ACGT 3 cut(s) 148, 388, 490
Hsp92II CATG 1 cut(s) 539
Kzo9I GATC 3 cut(s) 118, 526, 619
LmnI GCTCC 2 cut(s) 451, 497
LpnPI CCDG 9 cut(s) 17, 44, 194, 239, 362, 386, 404, 440, 478
Lsp1109I GCAGC 1 cut(s) 318
MaeI CTAG 2 cut(s) 351, 625
MaeII ACGT 3 cut(s) 148, 388, 490
MaeIII GTNAC 2 cut(s) 90, 343
MalI GATC 3 cut(s) 120, 528, 621
MboI GATC 3 cut(s) 118, 526, 619
MboII GAAGA 4 cut(s) 125, 128, 568, 617
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 3 cut(s) 6, 252, 444
MluNI TGGCCA 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 9 cut(s) 52, 103, 172, 177, 426, 442, 494, 508, 584
Mox20I TGGCCA 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 475
MscI TGGCCA 1 cut(s) 168
MseI TTAA 4 cut(s) 75, 251, 285, 411
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 2 cut(s) 229, 309
MspCI CTTAAG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 306, 382
NcoI CCATGG 1 cut(s) 535
NdeII GATC 3 cut(s) 118, 526, 619
NlaIII CATG 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 475
PkrI GCNGC 1 cut(s) 308
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
Ppu21I YACGTR 2 cut(s) 149, 491
Psp6I CCWGG 1 cut(s) 30
PspCI CACGTG 1 cut(s) 491
PspEI GGTNACC 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 376
PspGI CCWGG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 4 cut(s) 75, 251, 285, 411
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 3 cut(s) 118, 526, 619
ScrFI CCNGG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 410, 521
SmoI CTYRAG 2 cut(s) 410, 521
Sse9I AATT 3 cut(s) 6, 252, 444
SsiI CCGC 3 cut(s) 223, 309, 435
SspMI CTAG 2 cut(s) 351, 625
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 1 cut(s) 546
TaiI ACGT 3 cut(s) 151, 391, 493
TasI AATT 3 cut(s) 6, 252, 444
Tru1I TTAA 4 cut(s) 75, 251, 285, 411
Tru9I TTAA 4 cut(s) 75, 251, 285, 411
TscAI CASTG 2 cut(s) 536, 585
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 395
TspRI CASTG 2 cut(s) 536, 585
Vha464I CTTAAG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 541
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 2 cut(s) 351, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.