RchiOBHm_Chr2g0152211

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000202
Physical Location & Seq
Reverse (-)
69639242 .. 69640274
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52138

Sequence Viewer

Length: 714 bp
ATGAAGAAGCGACTCAACCAAATGAAACGCAAGTTTGCGGCTTTGGTCGAAGAGGAGAAAATGTATTCCACACTTGTAATTTGTGATCAGACGAGTCTAGACGGTGAGCCGGGAACTGAAATGGATGATGACCGTGCGAGTCAAATCGTCAGCGCAGAAACGAGTATAGTCGGTGCTGATGAGCAGGCGGAGAAGATTGAGGGCTTGCTGTGTGGCGGTGCTACGGCAATTGGGATAGTCGGCATTGCTGGCGTAGGTAAGACCACTCTAGTGCACCAGGTTTTGAATAGGCAGAGAGTGAGGCATGAGTTTTCTCCTATAATTTGGTTATGCTTATCGGACAAAGAAAAATATGAATTTACTAATAGCATCGGCATTAGCATTGTGAGACGCATTCTTGATAAGTTAAGGGCCGTTGATAGTGGCAATGGTGCCATTGACAATCTCAATGATGCCATAGTGGAGGAGGAGAGAGATATTTCTGGCCTCGGACTTGAGAGGCTCTTGGCAAGGCTTAACCGGCTTTTATCTGGTAAAAGATATTTGATTGTGTTGGATGATGTGTGGCACATTAGCGAATTTTATTCGGATTTAGGTTGTACAATTCAGGATCGGTTATCTTATGGATTGCCTAAGGGTAGTGGTGGTGCTGTTATTGTCACCACTAGGATATACCAGAAGTTGCTGAACACATGGTTGGCAGAAATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

237

Amino Acids

26.27

Weight (kDa)

5.38

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 57 - 193 1.9e-08 AAA ATPase domain
NB-ARC PF00931 62 - 223 4.9e-19 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AciI CCGC 3 cut(s) 38, 188, 216
AclWI GGATC 1 cut(s) 618
AcsI RAATTY 2 cut(s) 356, 578
AfaI GTAC 1 cut(s) 601
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AleI CACNNNNGTG 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 382
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 1 cut(s) 618
AoxI GGCC 2 cut(s) 411, 484
ApaLI GTGCAC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 356, 578
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 411
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 116, 652
AxyI CCTNAGG 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 276
BceAI ACGGC 2 cut(s) 240, 398
BciT130I CCWGG 1 cut(s) 278
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 98, 269, 666
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 111, 278
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 2 cut(s) 111, 278
BmsI GCATC 2 cut(s) 378, 442
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse118I RCCGGY 1 cut(s) 519
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 2 cut(s) 243, 433
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 2 cut(s) 130, 562
BseMI GCAATG 2 cut(s) 243, 433
BseRI GAGGAG 3 cut(s) 68, 479, 482
BseSI GKGCMC 1 cut(s) 276
BshFI GGCC 2 cut(s) 413, 486
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 110, 520
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 2 cut(s) 413, 486
Bsp1286I GDGCHC 1 cut(s) 276
Bsp1407I TGTACA 1 cut(s) 599
Bsp143I GATC 2 cut(s) 85, 610
BspACI CCGC 3 cut(s) 38, 188, 216
BspANI GGCC 2 cut(s) 413, 486
BspLI GGNNCC 1 cut(s) 433
BspPI GGATC 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 431
BsrDI GCAATG 2 cut(s) 243, 433
BsrFI RCCGGY 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 599
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 2 cut(s) 85, 610
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 104, 134
Bst6I CTCTTC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 186, 206, 250
BstDEI CTNAG 1 cut(s) 633
BstF5I GGATG 2 cut(s) 130, 562
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 88, 613
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 85, 610
BstMWI GCNNNNNNNGC 2 cut(s) 249, 520
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 109, 276
BstSLI GKGCMC 1 cut(s) 276
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 2 cut(s) 413, 486
BtsCI GGATG 2 cut(s) 130, 562
Cac8I GCNNGC 3 cut(s) 186, 206, 250
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 411
CseI GACGC 1 cut(s) 399
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 600
CviAII CATG 2 cut(s) 305, 693
CviJI RGCY 8 cut(s) 41, 109, 204, 413, 486, 502, 514, 523
CviKI_1 RGCY 8 cut(s) 41, 109, 204, 413, 486, 502, 514, 523
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 1 cut(s) 633
DpnI GATC 2 cut(s) 87, 612
DpnII GATC 2 cut(s) 85, 610
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 2 cut(s) 308, 696
FaiI YATR 9 cut(s) 167, 306, 320, 331, 354, 458, 624, 673, 694
FatI CATG 2 cut(s) 304, 692
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 137, 569
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 98, 269, 666
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 413, 486
HapII CCGG 2 cut(s) 110, 520
HgaI GACGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 155
Hin1II CATG 2 cut(s) 308, 696
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 3 cut(s) 12, 94, 139
HpaII CCGG 2 cut(s) 110, 520
HphI GGTGA 2 cut(s) 116, 652
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 90, 340, 491, 589
Hpy188III TCNNGA 3 cut(s) 98, 398, 608
Hpy8I GTNNAC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 104, 134
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 520
HpyF3I CTNAG 1 cut(s) 633
Hsp92II CATG 2 cut(s) 308, 696
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 610
LweI GCATC 2 cut(s) 378, 442
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 3 cut(s) 98, 269, 666
MaeIII GTNAC 1 cut(s) 658
MalI GATC 2 cut(s) 87, 612
MboI GATC 2 cut(s) 85, 610
MboII GAAGA 3 cut(s) 16, 62, 205
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 6 cut(s) 78, 228, 321, 356, 578, 603
MlyI GAGTC 3 cut(s) 6, 103, 148
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 7 cut(s) 46, 193, 294, 457, 460, 492, 497
MseI TTAA 2 cut(s) 407, 516
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 2 cut(s) 110, 520
MspR9I CCNGG 2 cut(s) 111, 278
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 249, 520
NciI CCSGG 1 cut(s) 111
NdeII GATC 2 cut(s) 85, 610
NlaIII CATG 2 cut(s) 308, 696
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 269
PctI GAATGC 1 cut(s) 393
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 3 cut(s) 6, 102, 147
PpsI GAGTC 3 cut(s) 6, 102, 147
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 1 cut(s) 411
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 2 cut(s) 407, 516
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 85, 610
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 3 cut(s) 6, 103, 148
ScrFI CCNGG 2 cut(s) 111, 278
SduI GDGCHC 1 cut(s) 276
SetI ASST 3 cut(s) 259, 282, 598
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 2 cut(s) 378, 442
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 6 cut(s) 78, 228, 321, 356, 578, 603
SsiI CCGC 3 cut(s) 38, 188, 216
SspMI CTAG 3 cut(s) 98, 269, 666
StyD4I CCNGG 2 cut(s) 109, 276
TaaI ACNGT 2 cut(s) 104, 134
TaqI TCGA 1 cut(s) 48
TasI AATT 6 cut(s) 78, 228, 321, 356, 578, 603
TatI WGTACW 1 cut(s) 599
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 407, 516
Tru9I TTAA 2 cut(s) 407, 516
TseFI GTSAC 1 cut(s) 658
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 3 cut(s) 17, 38, 369
VneI GTGCAC 1 cut(s) 272
XapI RAATTY 2 cut(s) 356, 578
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 3 cut(s) 98, 269, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.