Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Reverse (-)

69635399 .. 69639240

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGACTATCAAGGATAATAAGGAAGTTTTAAACATTTCAACTCATGAAACTTTGGATAAGATTAAAAATGAAATTAAGGACCAATGTTACGGTCTACCATTGGCTGCTAAGGAGCTCGCAGGAATCATTCCCAAACGGATTCGTGAGATAGAGTCCAACCGCTTCTTGAAGGAGATGTACATTCCTGATGAATTGCTTCATGCTGATTTGGAAGTCGAACCTGCTGTCCATATACCAAAATTCCCAGTGTTGGTGTTTATTGATATGAAAAATATGAACAATAAACAGCTTGGAGAAAAACTCCTTGACAAATTTCGCTATCATCTTAATAAAAAGCAGGTTTTTGCTGTTTTAGAAGAGAAGTCTGATACGAAGAAAAAAGTAAAGGCACATGACCCTGAGAGGGTGCTAAAGGATGTTTATGGCACTTTAGAAAAGCTTAAGCGTAAAGGATATGGTTTTGCTGATGAAATTCAAAAGACGATGACGGTTATAATTGTTGGTGGTGATTGTGTGGCTAACTGGATTTTGGGAGTTATCTGTGATCTAAAATTGCCGGAGTTACCCTCCATTGCTCCAATTCCGCTACAAACCATTTCTCTTATTGGTGGTAGCATCTCAAGTTCCTTTGGATGGAGGAGCATTTCTCCTGACGATCCAGTGAAATTGTCCCTGCTAGATGTACAATATGCAAAAAAAATGAAAACTGACAGCCGGCATATTCTCATTTGGATGAAAACCATTAAAAGTTCTACAGCTAATCAACAAATACCTCATTCTTTGCATCTATGTCATCCTGTTCACGAACCGGATAAGCAAAATGCGGATAATCTCAAATTGTCCGGAGGGTTTTGGAACTACTTCAGCTTGGAAGTTGATGCTCTCCGACAATATGGAAATCACTGCTTTCATCCTACTGAAAGGACCTTATCATCAGTTGCAAATATAAAGGTTATGAAACAACTTGGTCAGTGGGATAAACTTGATATTACTAGCAGGTATCCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat NB-ARC

Protein Analysis

337

Amino Acids

38.43

Weight (kDa)

8.72

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
Acc36I	ACCTGC	3 cut(s)	232, 331, 990
AccI	GTMKAC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	845
AciI	CCGC	3 cut(s)	163, 587, 827
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	3 cut(s)	242, 314, 474
AcuI	CTGAAG	1 cut(s)	850
AfaI	GTAC	2 cut(s)	182, 687
AfiI	CCNNNNNNNGG	3 cut(s)	253, 406, 636
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	42, 172, 479
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	6 cut(s)	118, 292, 442, 761, 870, 1010
AluI	AGCT	6 cut(s)	118, 292, 442, 761, 870, 1010
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	653
Aor13HI	TCCGGA	1 cut(s)	845
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	3 cut(s)	242, 314, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
Asp700I	GAANNNNTTC	2 cut(s)	198, 863
AspS9I	GGNCC	2 cut(s)	82, 927
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	82, 927
BanII	GRGCYC	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	630
BciVI	GTATCC	1 cut(s)	1014
BfaI	CTAG	2 cut(s)	680, 996
BfmI	CTRYAG	1 cut(s)	756
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	3 cut(s)	232, 331, 990
BfuI	GTATCC	1 cut(s)	1014
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	2 cut(s)	82, 927
BmgT120I	GGNCC	2 cut(s)	82, 927
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	3 cut(s)	627, 796, 871
BmuI	ACTGGG	1 cut(s)	242
BplI	GAGNNNNNCTC	6 cut(s)	288, 320, 554, 586, 634, 666
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	607
BsaWI	WCCGGW	2 cut(s)	811, 845
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 406, 636
Bse118I	RCCGGY	1 cut(s)	717
Bse1I	ACTGG	3 cut(s)	248, 530, 662
Bse3DI	GCAATG	1 cut(s)	573
BseAI	TCCGGA	1 cut(s)	845
BseGI	GGATG	5 cut(s)	424, 641, 741, 796, 913
BseLI	CCNNNNNNNGG	3 cut(s)	253, 406, 636
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	3 cut(s)	248, 530, 662
BseRI	GAGGAG	1 cut(s)	655
BseXI	GCAGC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	4 cut(s)	560, 718, 812, 846
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	3 cut(s)	253, 406, 636
BsmFI	GGGAC	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp13I	TCCGGA	1 cut(s)	845
Bsp1407I	TGTACA	2 cut(s)	180, 685
Bsp143I	GATC	2 cut(s)	547, 658
BspACI	CCGC	3 cut(s)	163, 587, 827
BspCNI	CTCAG	1 cut(s)	394
BspEI	TCCGGA	1 cut(s)	845
BspHI	TCATGA	1 cut(s)	46
BspMI	ACCTGC	3 cut(s)	232, 331, 990
BspPI	GGATC	1 cut(s)	653
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	1 cut(s)	717
BsrGI	TGTACA	2 cut(s)	180, 685
BsrI	ACTGG	3 cut(s)	248, 530, 662
BssAI	RCCGGY	1 cut(s)	717
BssMI	GATC	2 cut(s)	547, 658
Bst4CI	ACNGT	2 cut(s)	95, 493
Bst6I	CTCTTC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	443
BstAUI	TGTACA	2 cut(s)	180, 685
BstC8I	GCNNGC	2 cut(s)	120, 719
BstDEI	CTNAG	2 cut(s)	111, 402
BstF5I	GGATG	5 cut(s)	424, 641, 741, 796, 913
BstKTI	GATC	2 cut(s)	550, 661
BstMBI	GATC	2 cut(s)	547, 658
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	1014
BtsCI	GGATG	5 cut(s)	424, 641, 741, 796, 913
BtsI	GCAGTG	1 cut(s)	904
BtsIMutI	CAGTG	4 cut(s)	255, 669, 904, 980
BveI	ACCTGC	3 cut(s)	232, 331, 990
Cac8I	GCNNGC	2 cut(s)	120, 719
CciI	TCATGA	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	717
Cfr13I	GGNCC	2 cut(s)	82, 927
Csp6I	GTAC	2 cut(s)	181, 686
CviAII	CATG	3 cut(s)	47, 203, 395
CviJI	RGCY	9 cut(s)	107, 118, 292, 442, 521, 717, 761, 870, 1010
CviKI_1	RGCY	9 cut(s)	107, 118, 292, 442, 521, 717, 761, 870, 1010
CviQI	GTAC	2 cut(s)	181, 686
DdeI	CTNAG	2 cut(s)	111, 402
DpnI	GATC	2 cut(s)	549, 660
DpnII	GATC	2 cut(s)	547, 658
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	82, 927
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	850
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	3 cut(s)	50, 206, 398
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	3 cut(s)	46, 202, 394
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	5 cut(s)	431, 648, 748, 783, 900
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	680, 996
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	4 cut(s)	560, 718, 812, 846
Hin1II	CATG	3 cut(s)	50, 206, 398
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	3 cut(s)	126, 142, 155
HpaII	CCGG	4 cut(s)	560, 718, 812, 846
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	2 cut(s)	98, 805
Hpy188I	TCNGA	2 cut(s)	370, 890
Hpy188III	TCNNGA	7 cut(s)	47, 146, 169, 188, 653, 806, 846
Hpy8I	GTNNAC	2 cut(s)	98, 805
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	95, 493
HpyCH4V	TGCA	3 cut(s)	695, 787, 944
HpyF3I	CTNAG	2 cut(s)	111, 402
Hsp92II	CATG	3 cut(s)	50, 206, 398
Kpn2I	TCCGGA	1 cut(s)	845
KroI	GCCGGC	1 cut(s)	717
KroNI	GCCGGC	1 cut(s)	719
Kzo9I	GATC	2 cut(s)	547, 658
LmnI	GCTCC	3 cut(s)	115, 583, 642
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	3 cut(s)	627, 796, 871
MaeI	CTAG	2 cut(s)	680, 996
MaeIII	GTNAC	2 cut(s)	89, 564
MalI	GATC	2 cut(s)	549, 660
MboI	GATC	2 cut(s)	547, 658
MboII	GAAGA	2 cut(s)	371, 388
MhlI	GDGCHC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	183, 913
MnlI	CCTC	5 cut(s)	399, 580, 633, 786, 842
MroI	TCCGGA	1 cut(s)	845
MroNI	GCCGGC	1 cut(s)	717
MroXI	GAANNNNTTC	2 cut(s)	198, 863
MseI	TTAA	7 cut(s)	32, 66, 78, 330, 444, 747, 1012
MslI	CAYNNNNRTG	1 cut(s)	734
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	4 cut(s)	560, 718, 812, 846
NaeI	GCCGGC	1 cut(s)	719
NdeII	GATC	2 cut(s)	547, 658
NgoMIV	GCCGGC	1 cut(s)	717
NlaIII	CATG	3 cut(s)	50, 206, 398
PagI	TCATGA	1 cut(s)	46
PdiI	GCCGGC	1 cut(s)	719
PdmI	GAANNNNTTC	2 cut(s)	198, 863
PfeI	GAWTC	2 cut(s)	126, 142
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	927
PsiI	TTATAA	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	927
PspPI	GGNCC	2 cut(s)	82, 927
PspPPI	RGGWCCY	1 cut(s)	927
RsaI	GTAC	2 cut(s)	182, 687
RsaNI	GTAC	2 cut(s)	181, 686
RseI	CAYNNNNRTG	1 cut(s)	734
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	7 cut(s)	32, 66, 78, 330, 444, 747, 1012
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	547, 658
Sau96I	GGNCC	2 cut(s)	82, 927
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	3 cut(s)	627, 796, 871
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	2 cut(s)	82, 927
SmiMI	CAYNNNNRTG	1 cut(s)	734
SmlI	CTYRAG	2 cut(s)	443, 622
SmoI	CTYRAG	2 cut(s)	443, 622
SsiI	CCGC	3 cut(s)	163, 587, 827
SspMI	CTAG	2 cut(s)	680, 996
SstI	GAGCTC	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	95, 493
TaqI	TCGA	1 cut(s)	219
TatI	WGTACW	2 cut(s)	180, 685
TfiI	GAWTC	2 cut(s)	126, 142
Tru1I	TTAA	7 cut(s)	32, 66, 78, 330, 444, 747, 1012
Tru9I	TTAA	7 cut(s)	32, 66, 78, 330, 444, 747, 1012
TscAI	CASTG	4 cut(s)	255, 669, 911, 980
TseI	GCWGC	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	4 cut(s)	255, 669, 911, 980
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	82, 927
XapI	RAATTY	3 cut(s)	242, 314, 474
XmiI	GTMKAC	1 cut(s)	97
XmnI	GAANNNNTTC	2 cut(s)	198, 863
XspI	CTAG	2 cut(s)	680, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.