Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Forward (+)

69422003 .. 69422887

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTTGATACCTCATGAATTTCTTATTCATCGTTCATACATATTTGTTCCAGTCAACGAAAGGAACATAAAATGGATTGCTGATAAAACTGACATACCAAAATGCCCAGTCTTCGTGTTTGTTGATTTAAAAATGGAATTCTTTGCAGTAAGACTTCTCGAAGAATTTCGCTATCAGCTTAATCAAGATCCGGTTGTTGCTGTTCTAGACCAGAGTTTCATTAATAGGCAAAAGATAAAGACAGAGGAACCAGAGAAGGCGCTAAAAGAGTTTTATGGCATTCTCGAAAATCTTAAGTGCAAAGGACATAAATTTGCTGATGAGATTCAAAAGAAGATGACAATTATGATTGTTGGCGGGGATGTTTTTGCTAACTGGTTTATGGGAGTTATCTGTGATCTAAAATTGCCAGGCTCACCCTCCATTGTTCCTATAGCATTGGGAATCAAAGCTAACATTGCAAGTTCATTTGGATGGGTAAGAGATTTGTCATTAATTTGTGTATTAATCAAGTTATTAAAGCATTTAAACTTATCTAATTTCCACATGTACCATATATGTGTTTTGCTAAATTCCAGGAGTTTGATGCTGATAAAGTACCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat Lectin_C NB-ARC VWD

Protein Analysis

201

Amino Acids

23.33

Weight (kDa)

9.06

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	5 cut(s)	17, 137, 164, 311, 571
AfaI	GTAC	2 cut(s)	551, 599
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	546
AgeI	ACCGGT	1 cut(s)	600
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	409, 575
AluBI	AGCT	2 cut(s)	178, 452
AluI	AGCT	2 cut(s)	178, 452
AlwI	GGATC	1 cut(s)	182
ApoI	RAATTY	5 cut(s)	17, 137, 164, 311, 571
AseI	ATTAAT	3 cut(s)	222, 494, 506
AsiGI	ACCGGT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	103
BccI	CCATC	1 cut(s)	468
BciT130I	CCWGG	2 cut(s)	411, 577
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	263
BfrI	CTTAAG	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	411, 577
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	411, 577
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	576
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	103
BsaWI	WCCGGW	2 cut(s)	190, 600
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	3 cut(s)	50, 107, 380
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	411, 577
BseGI	GGATG	2 cut(s)	367, 479
BseMI	GCAATG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	50, 107, 380
BshTI	ACCGGT	1 cut(s)	600
BsiSI	CCGG	2 cut(s)	191, 601
BsmI	GAATGC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	187, 397
BspACI	CCGC	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	50, 107, 380
BssAI	RCCGGY	1 cut(s)	600
BssMI	GATC	2 cut(s)	187, 397
Bst2UI	CCWGG	2 cut(s)	411, 577
BstAFI	CTTAAG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	367, 479
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	2 cut(s)	190, 400
BstMBI	GATC	2 cut(s)	187, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	2 cut(s)	411, 577
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	2 cut(s)	409, 575
BstSFI	CTRYAG	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	367, 479
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	550, 598
CspAI	ACCGGT	1 cut(s)	600
CviAII	CATG	2 cut(s)	14, 547
CviJI	RGCY	3 cut(s)	178, 414, 452
CviKI_1	RGCY	3 cut(s)	178, 414, 452
CviQI	GTAC	2 cut(s)	550, 598
DpnI	GATC	2 cut(s)	189, 399
DpnII	GATC	2 cut(s)	187, 397
DraI	TTTAAA	2 cut(s)	129, 528
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	409, 575
FaeI	CATG	2 cut(s)	17, 550
FatI	CATG	2 cut(s)	13, 546
FauI	CCCGC	1 cut(s)	350
FokI	GGATG	2 cut(s)	374, 486
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	263
HapII	CCGG	2 cut(s)	191, 601
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	17, 550
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	325, 444
HpaII	CCGG	2 cut(s)	191, 601
HphI	GGTGA	1 cut(s)	408
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	5 cut(s)	14, 158, 185, 206, 284
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	146, 300, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	17, 550
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	187, 397
LweI	GCATC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	206
MalI	GATC	2 cut(s)	189, 399
MboI	GATC	2 cut(s)	187, 397
MboII	GAAGA	3 cut(s)	103, 173, 346
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	9 cut(s)	17, 137, 164, 311, 342, 404, 495, 538, 571
MnlI	CCTC	3 cut(s)	21, 238, 430
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	8 cut(s)	128, 180, 222, 294, 494, 506, 518, 527
MslI	CAYNNNNRTG	2 cut(s)	472, 558
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	2 cut(s)	191, 601
MspR9I	CCNGG	2 cut(s)	411, 577
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	2 cut(s)	411, 577
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	2 cut(s)	187, 397
NlaIII	CATG	2 cut(s)	17, 550
NlaIV	GGNNCC	1 cut(s)	249
NspI	RCATGY	1 cut(s)	550
PagI	TCATGA	1 cut(s)	13
PciI	ACATGT	1 cut(s)	546
PctI	GAATGC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	325, 444
PfoI	TCCNGGA	1 cut(s)	575
PinAI	ACCGGT	1 cut(s)	600
PscI	ACATGT	1 cut(s)	546
PshBI	ATTAAT	3 cut(s)	222, 494, 506
Psp6I	CCWGG	2 cut(s)	409, 575
PspGI	CCWGG	2 cut(s)	409, 575
PspN4I	GGNNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	2 cut(s)	551, 599
RsaNI	GTAC	2 cut(s)	550, 598
RseI	CAYNNNNRTG	2 cut(s)	472, 558
SaqAI	TTAA	8 cut(s)	128, 180, 222, 294, 494, 506, 518, 527
Sau3AI	GATC	2 cut(s)	187, 397
ScrFI	CCNGG	2 cut(s)	411, 577
SetI	ASST	3 cut(s)	13, 180, 454
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	2 cut(s)	472, 558
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	9 cut(s)	17, 137, 164, 311, 342, 404, 495, 538, 571
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	409, 575
TaqI	TCGA	2 cut(s)	159, 285
TasI	AATT	9 cut(s)	17, 137, 164, 311, 342, 404, 495, 538, 571
TfiI	GAWTC	2 cut(s)	325, 444
Tru1I	TTAA	8 cut(s)	128, 180, 222, 294, 494, 506, 518, 527
Tru9I	TTAA	8 cut(s)	128, 180, 222, 294, 494, 506, 518, 527
TspDTI	ATGAA	5 cut(s)	17, 24, 30, 208, 456
Vha464I	CTTAAG	1 cut(s)	293
VspI	ATTAAT	3 cut(s)	222, 494, 506
XapI	RAATTY	5 cut(s)	17, 137, 164, 311, 571
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.