RLG00000020586

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000202
Physical Location & Seq
Forward (+)
66472471 .. 66473475
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020586

Sequence Viewer

Length: 1005 bp
ATGGCTGGTGTGGGTAAGTCCACTTTCTTATTAAAAGAAATTTTGGAGTGGAATGACATACGCTTTGAGTTTTCTTCTATCATTCAGTTATGTTTGTCTGATATAATGCAAGAAAACAATGTAGTAGACAGTACTAGTGCCAATGGGGTCAGCATAAGCATTGTGAAACTCATTCTTCAAAAGTTGGGGGAGGAGGAAACTGGTATTTCTGGCCTTGGACTCACTTCGCTCTTGGAAAGGCTCTACAGTCTTTTATCAGGTAAAAAGTATTTGATTGCGTTGGATGATGTGTTTCATGCTATGGAATTCTATTCGGATTTGGGTAATGAGCGTGAGAAATTCAGGGATCGGTTATCGCATGGATTGCCTAAGGATAGTGGTGGTGTAGTCATTGTCATTAGTAGTAAACCAGAAGTAGCTCTCGATATGGTGGGGCTTCGCCAAAATTCTGTGCATAAGCGGCTGACCACACTCAAAAGGAAGTCTGAAGTACAGTCGACAACTTCAGTGGAACGGCGAGACCATCAAACACCTATAGATAACAGCCCCACATCGATTTCTACGCCGAAAGAGAAGACGAATGTGGTAGAAGAATGTTTGCCAGTAACAGAGAAGGCAAAGAAAATTTCACTAGAAAATGTTCTACTAATTCCCAATGTAGGGAGGTCCAGGAACCAAAGGGATTTTAGGGACTCTAGCTTGCTTGTTGGTGATCCAGCCGGAATTGGATTTACGGCCATTGGGATAGTTGGCATGGCAGGTGTTGGTAAGTCCACTTTCGTGCACAAGGTCCTGAAAACTGTGTGGTTCGAATTTGATCCTATAGTTTGGTTATGCTTGTCGGATATAATCAAAGCTAAAAACCAAGTACAGGATGCTACTGCTGCCACTGATCAGGAGATCAGCATTAGCATTGTGACATGTATCCTTGAAATGTTGGGGGTCTCCATAGACAAGGACCTTACCCTTGCCGAGCTCTTGGAAAGGCTCTACCTGTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

335

Amino Acids

36.98

Weight (kDa)

5.55

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 102 5.4e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 749
Acc36I ACCTGC 1 cut(s) 749
AccI GTMKAC 2 cut(s) 126, 497
AciI CCGC 1 cut(s) 460
AclWI GGATC 3 cut(s) 354, 707, 812
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 6 cut(s) 39, 305, 338, 445, 624, 812
AcuI CTGAAG 2 cut(s) 489, 507
AfaI GTAC 3 cut(s) 133, 492, 870
AfiI CCNNNNNNNGG 3 cut(s) 659, 660, 871
AflIII ACRYGT 1 cut(s) 920
AgsI TTSAA 2 cut(s) 179, 932
AhlI ACTAGT 1 cut(s) 134
AjnI CCWGG 1 cut(s) 668
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 4 cut(s) 419, 699, 857, 976
AluI AGCT 4 cut(s) 419, 699, 857, 976
Alw21I GWGCWC 2 cut(s) 786, 978
Alw26I GTCTC 2 cut(s) 513, 949
Alw44I GTGCAC 1 cut(s) 782
AlwI GGATC 3 cut(s) 354, 707, 812
AoxI GGCC 2 cut(s) 211, 735
ApaLI GTGCAC 1 cut(s) 782
ApeKI GCWGC 1 cut(s) 884
ApoI RAATTY 6 cut(s) 39, 305, 338, 445, 624, 812
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
Asp700I GAANNNNTTC 1 cut(s) 639
AspS9I GGNCC 3 cut(s) 666, 790, 958
AsuHPI GGTGA 1 cut(s) 722
AsuII TTCGAA 1 cut(s) 810
AvaII GGWCC 3 cut(s) 666, 790, 958
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 786
BanII GRGCYC 1 cut(s) 978
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 2 cut(s) 786, 978
BbvI GCAGC 1 cut(s) 871
BccI CCATC 1 cut(s) 531
BceAI ACGGC 2 cut(s) 530, 750
BciT130I CCWGG 1 cut(s) 670
BciVI GTATCC 1 cut(s) 935
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 513, 949
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 3 cut(s) 135, 632, 696
BfmI CTRYAG 3 cut(s) 244, 534, 822
BfuAI ACCTGC 1 cut(s) 749
BfuI GTATCC 1 cut(s) 935
BisI GCNGC 2 cut(s) 461, 885
BlsI GCNGC 2 cut(s) 462, 886
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 670
Bme18I GGWCC 3 cut(s) 666, 790, 958
BmgT120I GGNCC 3 cut(s) 666, 790, 958
BmiI GGNNCC 1 cut(s) 674
BmrFI CCNGG 1 cut(s) 670
BmsI GCATC 1 cut(s) 865
BpiI GAAGAC 1 cut(s) 581
Bpu14I TTCGAA 1 cut(s) 810
Bsa29I ATCGAT 1 cut(s) 554
BsaI GGTCTC 2 cut(s) 513, 949
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 3 cut(s) 659, 660, 871
Bse1I ACTGG 2 cut(s) 205, 602
Bse21I CCTNAGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 670
BseCI ATCGAT 1 cut(s) 554
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 289, 880
BseLI CCNNNNNNNGG 3 cut(s) 659, 660, 871
BseNI ACTGG 2 cut(s) 205, 602
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 1 cut(s) 871
BshFI GGCC 2 cut(s) 213, 737
BshVI ATCGAT 1 cut(s) 554
BsiHKAI GWGCWC 2 cut(s) 786, 978
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 3 cut(s) 659, 660, 871
BsmAI GTCTC 2 cut(s) 513, 949
BsmFI GGGAC 1 cut(s) 704
BsnI GGCC 2 cut(s) 213, 737
Bso31I GGTCTC 2 cut(s) 513, 949
Bsp119I TTCGAA 1 cut(s) 810
Bsp1286I GDGCHC 2 cut(s) 786, 978
Bsp143I GATC 5 cut(s) 346, 712, 817, 892, 900
BspACI CCGC 1 cut(s) 460
BspANI GGCC 2 cut(s) 213, 737
BspDI ATCGAT 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 674
BspMI ACCTGC 1 cut(s) 749
BspPI GGATC 3 cut(s) 354, 707, 812
BspT104I TTCGAA 1 cut(s) 810
BspTNI GGTCTC 2 cut(s) 513, 949
BsrI ACTGG 2 cut(s) 205, 602
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 5 cut(s) 346, 712, 817, 892, 900
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 4 cut(s) 131, 248, 495, 802
BstAPI GCANNNNNTGC 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 810
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 289, 880
BstKTI GATC 5 cut(s) 349, 715, 820, 895, 903
BstMAI GTCTC 2 cut(s) 513, 949
BstMBI GATC 5 cut(s) 346, 712, 817, 892, 900
BstMWI GCNNNNNNNGC 3 cut(s) 364, 460, 884
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 1 cut(s) 924
BstSCI CCNGG 1 cut(s) 668
BstSFI CTRYAG 3 cut(s) 244, 534, 822
BstSLI GKGCMC 1 cut(s) 786
BstV1I GCAGC 1 cut(s) 871
BstV2I GAAGAC 1 cut(s) 581
Bsu15I ATCGAT 1 cut(s) 554
Bsu36I CCTNAGG 1 cut(s) 369
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 2 cut(s) 213, 737
BsuTUI ATCGAT 1 cut(s) 554
BtsCI GGATG 2 cut(s) 289, 880
BtsIMutI CAGTG 2 cut(s) 513, 888
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 1 cut(s) 701
Cfr13I GGNCC 3 cut(s) 666, 790, 958
ClaI ATCGAT 1 cut(s) 554
Csp6I GTAC 3 cut(s) 132, 491, 869
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 4 cut(s) 296, 359, 754, 921
CviQI GTAC 3 cut(s) 132, 491, 869
DdeI CTNAG 1 cut(s) 369
DpnI GATC 5 cut(s) 348, 714, 819, 894, 902
DpnII GATC 5 cut(s) 346, 712, 817, 892, 900
EaeI YGGCCR 1 cut(s) 735
Ecl136II GAGCTC 1 cut(s) 976
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 978
Eco31I GGTCTC 2 cut(s) 513, 949
Eco47I GGWCC 3 cut(s) 666, 790, 958
Eco53kI GAGCTC 1 cut(s) 976
Eco57I CTGAAG 2 cut(s) 489, 507
Eco81I CCTNAGG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 976
EcoO109I RGGNCCY 2 cut(s) 790, 958
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 668
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 978
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 4 cut(s) 299, 362, 757, 924
FaqI GGGAC 1 cut(s) 704
FatI CATG 4 cut(s) 295, 358, 753, 920
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 2 cut(s) 126, 497
Fnu4HI GCNGC 2 cut(s) 461, 885
FokI GGATG 2 cut(s) 296, 887
FriOI GRGCYC 1 cut(s) 978
Fsp4HI GCNGC 2 cut(s) 461, 885
FspBI CTAG 3 cut(s) 135, 632, 696
GluI GCNGC 2 cut(s) 461, 885
HaeIII GGCC 2 cut(s) 213, 737
HapII CCGG 1 cut(s) 720
Hin1II CATG 4 cut(s) 299, 362, 757, 924
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 2 cut(s) 219, 692
HpaII CCGG 1 cut(s) 720
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 6 cut(s) 21, 127, 407, 498, 774, 784
Hpy188I TCNGA 4 cut(s) 100, 316, 487, 844
Hpy188III TCNNGA 3 cut(s) 422, 793, 896
Hpy8I GTNNAC 6 cut(s) 21, 127, 407, 498, 774, 784
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 4 cut(s) 131, 248, 495, 802
HpyCH4V TGCA 3 cut(s) 109, 454, 784
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 460, 884
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 4 cut(s) 299, 362, 757, 924
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 5 cut(s) 346, 712, 817, 892, 900
Lsp1109I GCAGC 1 cut(s) 871
LweI GCATC 1 cut(s) 865
MaeI CTAG 3 cut(s) 135, 632, 696
MaeIII GTNAC 2 cut(s) 604, 916
MalI GATC 5 cut(s) 348, 714, 819, 894, 902
MboI GATC 5 cut(s) 346, 712, 817, 892, 900
MboII GAAGA 4 cut(s) 66, 167, 586, 602
MhlI GDGCHC 2 cut(s) 786, 978
MluCI AATT 8 cut(s) 39, 305, 338, 445, 624, 648, 723, 812
MlyI GAGTC 2 cut(s) 213, 686
MmeI TCCRAC 2 cut(s) 261, 822
MnlI CCTC 3 cut(s) 184, 187, 657
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 779
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 670
MvaI CCWGG 1 cut(s) 670
MwoI GCNNNNNNNGC 3 cut(s) 364, 460, 884
NdeII GATC 5 cut(s) 346, 712, 817, 892, 900
NlaIII CATG 4 cut(s) 299, 362, 757, 924
NlaIV GGNNCC 1 cut(s) 674
NmeAIII GCCGAG 1 cut(s) 997
NmuCI GTSAC 1 cut(s) 916
NspI RCATGY 1 cut(s) 924
NspV TTCGAA 1 cut(s) 810
OliI CACNNNNGTG 1 cut(s) 779
PaqCI CACCTGC 1 cut(s) 749
PciI ACATGT 1 cut(s) 920
PdmI GAANNNNTTC 1 cut(s) 639
PfoI TCCNGGA 1 cut(s) 668
PkrI GCNGC 2 cut(s) 462, 886
PleI GAGTC 2 cut(s) 213, 686
PpsI GAGTC 2 cut(s) 213, 686
PpuMI RGGWCCY 2 cut(s) 790, 958
PscI ACATGT 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 978
Psp5II RGGWCCY 2 cut(s) 790, 958
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 1 cut(s) 674
PspPI GGNCC 3 cut(s) 666, 790, 958
PspPPI RGGWCCY 2 cut(s) 790, 958
RsaI GTAC 3 cut(s) 133, 492, 870
RsaNI GTAC 3 cut(s) 132, 491, 869
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 1 cut(s) 978
SalI GTCGAC 1 cut(s) 496
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 2 cut(s) 461, 885
Sau3AI GATC 5 cut(s) 346, 712, 817, 892, 900
Sau96I GGNCC 3 cut(s) 666, 790, 958
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 2 cut(s) 213, 686
ScrFI CCNGG 1 cut(s) 670
SduI GDGCHC 2 cut(s) 786, 978
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 3 cut(s) 244, 534, 822
SfuI TTCGAA 1 cut(s) 810
SinI GGWCC 3 cut(s) 666, 790, 958
SmiMI CAYNNNNRTG 1 cut(s) 779
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 8 cut(s) 39, 305, 338, 445, 624, 648, 723, 812
SsiI CCGC 1 cut(s) 460
SspMI CTAG 3 cut(s) 135, 632, 696
SstI GAGCTC 1 cut(s) 978
StyD4I CCNGG 1 cut(s) 668
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 4 cut(s) 131, 248, 495, 802
TaqI TCGA 4 cut(s) 423, 497, 554, 810
TasI AATT 8 cut(s) 39, 305, 338, 445, 624, 648, 723, 812
TatI WGTACW 3 cut(s) 131, 490, 868
TauI GCSGC 1 cut(s) 463
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 2 cut(s) 513, 895
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 1 cut(s) 884
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 2 cut(s) 513, 895
VneI GTGCAC 1 cut(s) 782
VpaK11BI GGWCC 3 cut(s) 666, 790, 958
XapI RAATTY 6 cut(s) 39, 305, 338, 445, 624, 812
XceI RCATGY 1 cut(s) 924
XmiI GTMKAC 2 cut(s) 126, 497
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 3 cut(s) 135, 632, 696
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.