Prupe.3G175700_v2.0.a1

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000202
Physical Location & Seq
Forward (+)
19239432 .. 19241852
2421 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G175700.1

Sequence Viewer

Length: 615 bp
ATGAAAAAGGAAAAAAGAATTTATAACTTGAGGGAATCATCAAGTCGTCCTGATCCTGAAGAGAATCTAATACATCGCCGTCAAAGATTTGAGGCTGAAGTTGTGGGATTTGATGAACAATTACGGAAGATTGGGAGCTTTCTTTTAAAATCATCGCCGTCGTCAGGTGCCGGATTTGCGGCAGTTGGGATACTGGGCATGGCAGGCGCAGGCAAGACCACCCTGGTGCGCGAGTTTTTGAGTTTGTGGATAGTGCGAGATGAATTTTCTCCTATAATTTGGTTATGCTTGTCGAATATAATCAAAGAAAATAAACAAGTAGAAGAAGAAATTGAGGTCAGCATTGTGAAATGTATGCTTGGTAAGTTGGACCATGATGCCGTTGCCGATGGAGATGGCATCATCCAGGAGGAGGAGAAGATAATAAGTAGTAATAATAATTCTGGTCATGTCCTTGCTGCGCTCTTGGAAAGGCTCAACCAACATTTATCAGGCAAAAGTTATTTGGTTGTGTTGGATGATGTGTGGCACATGAACAATTTCTACTCCGATTTAGGACATAGGCGACTTCAGGTTCAGGAAGGTGATAAGAAAGTTGGGGATCATCGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

205

Amino Acids

23.08

Weight (kDa)

6.08

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 47, 609
AcsI RAATTY 2 cut(s) 18, 263
AcuI CTGAAG 3 cut(s) 78, 117, 554
AfiI CCNNNNNNNGG 2 cut(s) 164, 412
AjnI CCWGG 2 cut(s) 222, 405
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
AlwI GGATC 2 cut(s) 47, 609
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 2 cut(s) 18, 263
Asp700I GAANNNNTTC 1 cut(s) 539
AspLEI GCGC 3 cut(s) 209, 231, 463
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 596
AvaII GGWCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 383, 389
BceAI ACGGC 3 cut(s) 63, 142, 365
BciT130I CCWGG 2 cut(s) 224, 407
BciVI GTATCC 1 cut(s) 183
BfaI CTAG 1 cut(s) 613
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 180, 459
BlsI GCNGC 2 cut(s) 181, 460
Bme1390I CCNGG 2 cut(s) 224, 407
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 224, 407
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 367, 408
BmuI ACTGGG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 412
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 2 cut(s) 224, 407
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 402, 523
BseLI CCNNNNNNNGG 2 cut(s) 164, 412
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 2 cut(s) 425, 428
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 164, 412
Bsp143I GATC 2 cut(s) 52, 601
BspACI CCGC 1 cut(s) 179
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 2 cut(s) 47, 609
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 52, 601
Bst2UI CCWGG 2 cut(s) 224, 407
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 205, 211
BstF5I GGATG 2 cut(s) 402, 523
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 3 cut(s) 209, 231, 463
BstKTI GATC 2 cut(s) 55, 604
BstMBI GATC 2 cut(s) 52, 601
BstMWI GCNNNNNNNGC 2 cut(s) 176, 204
BstNI CCWGG 2 cut(s) 224, 407
BstSCI CCNGG 2 cut(s) 222, 405
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 445
BsuI GTATCC 1 cut(s) 183
BtgZI GCGATG 2 cut(s) 59, 138
BtsCI GGATG 2 cut(s) 402, 523
Cac8I GCNNGC 2 cut(s) 205, 211
CfoI GCGC 3 cut(s) 209, 231, 463
Cfr13I GGNCC 1 cut(s) 370
CviAII CATG 4 cut(s) 199, 374, 449, 532
CviJI RGCY 3 cut(s) 95, 138, 475
CviKI_1 RGCY 3 cut(s) 95, 138, 475
DpnI GATC 2 cut(s) 54, 603
DpnII GATC 2 cut(s) 52, 601
DraI TTTAAA 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 3 cut(s) 78, 117, 554
EcoRII CCWGG 2 cut(s) 222, 405
FaeI CATG 4 cut(s) 202, 377, 452, 535
FatI CATG 4 cut(s) 198, 373, 448, 531
Fnu4HI GCNGC 2 cut(s) 180, 459
FokI GGATG 2 cut(s) 389, 530
Fsp4HI GCNGC 2 cut(s) 180, 459
FspBI CTAG 1 cut(s) 613
GlaI GCGC 3 cut(s) 208, 230, 462
GluI GCNGC 2 cut(s) 180, 459
HapII CCGG 1 cut(s) 171
HhaI GCGC 3 cut(s) 209, 231, 463
Hin1II CATG 4 cut(s) 202, 377, 452, 535
Hin6I GCGC 3 cut(s) 207, 229, 461
HinP1I GCGC 3 cut(s) 207, 229, 461
HinfI GANTC 2 cut(s) 35, 64
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 596
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 3 cut(s) 50, 56, 578
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 204
Hsp92II CATG 4 cut(s) 202, 377, 452, 535
HspAI GCGC 3 cut(s) 207, 229, 461
Kzo9I GATC 2 cut(s) 52, 601
LmnI GCTCC 1 cut(s) 135
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 2 cut(s) 367, 408
MaeI CTAG 1 cut(s) 613
MaeIII GTNAC 1 cut(s) 608
MalI GATC 2 cut(s) 54, 603
MboI GATC 2 cut(s) 52, 601
MboII GAAGA 5 cut(s) 71, 139, 335, 338, 430
MluCI AATT 7 cut(s) 18, 119, 263, 276, 330, 439, 538
MmeI TCCRAC 2 cut(s) 348, 495
MnlI CCTC 5 cut(s) 24, 85, 328, 403, 406
MroXI GAANNNNTTC 1 cut(s) 539
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 224, 407
MvaI CCWGG 2 cut(s) 224, 407
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 176, 204
NdeII GATC 2 cut(s) 52, 601
NlaIII CATG 4 cut(s) 202, 377, 452, 535
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 608
OliI CACNNNNGTG 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 2 cut(s) 35, 64
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 2 cut(s) 181, 460
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 222, 405
PspGI CCWGG 2 cut(s) 222, 405
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 370
PsrI GAACNNNNNNTAC 2 cut(s) 527, 559
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 2 cut(s) 180, 459
Sau3AI GATC 2 cut(s) 52, 601
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 224, 407
SetI ASST 5 cut(s) 140, 169, 339, 576, 586
SfaNI GCATC 2 cut(s) 367, 408
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 7 cut(s) 18, 119, 263, 276, 330, 439, 538
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 613
StyD4I CCNGG 2 cut(s) 222, 405
TaqI TCGA 1 cut(s) 293
TasI AATT 7 cut(s) 18, 119, 263, 276, 330, 439, 538
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 35, 64
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 4 cut(s) 17, 129, 276, 548
TspGWI ACGGA 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 2 cut(s) 18, 263
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.