Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002351.1

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Reverse (-)

24515 .. 25042

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002351.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ctggtgcagaaggttttggagagagagggagtgaagaagaggtttagtactatactttggttgcccttttatggtataagtgaaggagaacaacaatacagtaagctcggctttaagacatgtattcttgacaaggggggcaaatcccctgatgagaagattgttggcctggggaagctcttggaaaggctgaagcaactgttatcgggtaaaaggtatctgattgtgttggatgatgtgtgtcatcagcacattaacattatggaacgcttagtcagtgggttgcctaaagaaagtggcggcgctgtcattgtcactagcagattgaaggaagtggctcaaaagattggagaacaacaatacctgattcctgttgaggcacaggaagatatttgctcgaaaataattgaggagactatacagagtgatgagggattgccaatgactaagaaggaaatgaaggatcaatgccatggtctaccgttggttgcagaaacactagcacattttattcctcaaatggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat Lectin_C NB-ARC VWD

Protein Analysis

175

Amino Acids

19.67

Weight (kDa)

7.07

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	478
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	106, 178
AluI	AGCT	2 cut(s)	106, 178
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	471
AoxI	GGCC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	318, 500
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	169, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	169, 472
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	169, 472
BssMI	GATC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	3 cut(s)	101, 201, 483
Bst6I	CTCTTC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	271, 447
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	283
CfoI	GCGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	2 cut(s)	120, 473
CviJI	RGCY	6 cut(s)	106, 111, 168, 178, 190, 338
CviKI_1	RGCY	6 cut(s)	106, 111, 168, 178, 190, 338
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	2 cut(s)	271, 447
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	2 cut(s)	123, 476
FaiI	YATR	8 cut(s)	53, 72, 77, 121, 263, 419, 474, 526
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	2 cut(s)	119, 472
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	318, 500
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	123, 476
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HinfI	GANTC	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	479
HpyAV	CCTTC	5 cut(s)	4, 77, 322, 445, 454
HpyCH4III	ACNGT	3 cut(s)	101, 201, 483
HpyCH4V	TGCA	2 cut(s)	7, 491
HpyF3I	CTNAG	2 cut(s)	271, 447
Hsp92II	CATG	2 cut(s)	123, 476
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	463
LpnPI	CCDG	6 cut(s)	155, 162, 182, 368, 377, 384
MaeI	CTAG	2 cut(s)	318, 500
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	4 cut(s)	46, 49, 169, 398
MluCI	AATT	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	19, 33, 370, 403, 424, 525
MseI	TTAA	2 cut(s)	114, 255
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	2 cut(s)	123, 476
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	123
PciI	ACATGT	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	302
PscI	ACATGT	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	114, 255
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	463
ScaI	AGTACT	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	6 cut(s)	15, 44, 108, 180, 218, 366
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	318, 500
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	101, 201, 483
TaqI	TCGA	1 cut(s)	398
TasI	AATT	1 cut(s)	405
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	114, 255
Tru9I	TTAA	2 cut(s)	114, 255
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	283
XceI	RCATGY	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	478
XspI	CTAG	2 cut(s)	318, 500
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.