Rh5BG245500

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000202
Physical Location & Seq
Reverse (-)
29783633 .. 29783965
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG245500.1

Sequence Viewer

Length: 333 bp
ATGATTAGTTTGCCATTAACAGAGAAAGCAAAGAAAATTTCACCAGAAAATGTGCTACTAATTCCCAATGTAAGGAGCTGGTCCAGGAACCAAAGGGATTTTAGGGACTCTAGCTTGCTTGTGGGTGATCCAGCCGGAATTGGATTTACGGCCACTGGGATAGTTGGCATGGCAGGTGTTGGTAAGTCCACTTTCGTGCACAAGGTCTTGAAAACTGTGTGGTTCGAATTTGATCCTATAGTTTGGTTATGCTTGTCGGATATAATCAAAGCTAAAAACCAAGTGCAGATGCTACTGCTGCCACTGACCAGGAGATCAGCATTAGCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

110

Amino Acids

12.18

Weight (kDa)

10.01

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 52 - 102 3.3e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
AclWI GGATC 2 cut(s) 122, 227
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 36, 227
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 2 cut(s) 83, 308
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 3 cut(s) 78, 114, 272
AluI AGCT 3 cut(s) 78, 114, 272
Alw21I GWGCWC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 2 cut(s) 122, 227
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 2 cut(s) 36, 227
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 33, 137
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 85, 310
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
Bme1390I CCNGG 2 cut(s) 85, 310
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 85, 310
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 2 cut(s) 85, 310
BseLI CCNNNNNNNGG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 127, 232, 314
BspANI GGCC 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 2 cut(s) 122, 227
BspT104I TTCGAA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 160
BssMI GATC 3 cut(s) 127, 232, 314
Bst2UI CCWGG 2 cut(s) 85, 310
Bst4CI ACNGT 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 116
BstKTI GATC 3 cut(s) 130, 235, 317
BstMBI GATC 3 cut(s) 127, 232, 314
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 2 cut(s) 85, 310
BstSCI CCNGG 2 cut(s) 83, 308
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 153, 302
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 78, 114, 134, 152, 272
CviKI_1 RGCY 5 cut(s) 78, 114, 134, 152, 272
DpnI GATC 3 cut(s) 129, 234, 316
DpnII GATC 3 cut(s) 127, 232, 314
EaeI YGGCCR 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 83, 308
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 170, 239, 250, 263
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 299
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 135
Hin1II CATG 1 cut(s) 172
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 33, 137
Hpy166II GTNNAC 2 cut(s) 189, 199
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 189, 199
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 199, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 3 cut(s) 127, 232, 314
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 111
MalI GATC 3 cut(s) 129, 234, 316
MboI GATC 3 cut(s) 127, 232, 314
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 36, 60, 138, 227
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 237
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 85, 310
MvaI CCWGG 2 cut(s) 85, 310
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 3 cut(s) 127, 232, 314
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 89
NspV TTCGAA 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 194
PaqCI CACCTGC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 1 cut(s) 300
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 83, 308
PspGI CCWGG 2 cut(s) 83, 308
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 3 cut(s) 127, 232, 314
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 85, 310
SduI GDGCHC 1 cut(s) 201
SetI ASST 5 cut(s) 80, 116, 178, 207, 274
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 237
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 4 cut(s) 36, 60, 138, 227
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 83, 308
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 36, 60, 138, 227
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 2 cut(s) 160, 309
TseI GCWGC 1 cut(s) 298
TspRI CASTG 2 cut(s) 160, 309
VneI GTGCAC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 2 cut(s) 36, 227
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.