Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Reverse (-)

50079701 .. 50081386

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCATTAGATGTTGCTGAATTGCTGTGGAGCAAGTTCTTGAAGTCTCTGGCAGAGCTAGACTCTGAATCTAATTCAGGTTCTATTACCATCTCTGTCTTCAAATCATCAATAAAAGCTCTCGTGTCTGATTTCGAAGCAATCAAAGACGTTGTGAATGAGAGAGACATAATGCCGGAACCTTATTCCTACTCTGAAACTATCAATCTGCTCTACAAACTCAACGATGCATTGGCTGACTGCCGAGTCTTCACACATGAGTGTATGGAGCTTAATAATGTGATCTCACGCTTCAACTTTCGAAGATTTACTTTTGTCGCAAAGGTAAAGAGTCGGTTGACCAAAATAAAGCAGGAGCTTGAGCACTTGCCGCAACAACCAATTGGCAATCCTCGGACAAAGACCGAATTCACCGGATCCGGACCTAAGTACCTTCAGCCAAAGTTTTCGGATTTGATGAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat Lectin_C NB-ARC VWD

Protein Analysis

155

Amino Acids

17.7

Weight (kDa)

6.74

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	419
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	2 cut(s)	411, 424
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	43, 103, 295
AleI	CACNNNNGTG	1 cut(s)	259
AluBI	AGCT	4 cut(s)	58, 119, 271, 358
AluI	AGCT	4 cut(s)	58, 119, 271, 358
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	51, 159
AlwI	GGATC	2 cut(s)	411, 424
Aor13HI	TCCGGA	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	403
AsuII	TTCGAA	2 cut(s)	135, 301
AvaII	GGWCC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	413, 446
BamHI	GGATCC	1 cut(s)	416
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	91, 241
Bbv12I	GWGCWC	1 cut(s)	366
BccI	CCATC	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	51, 159
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	180, 418
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	2 cut(s)	91, 241
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu14I	TTCGAA	2 cut(s)	135, 301
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	2 cut(s)	413, 419
BseAI	TCCGGA	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	176, 414, 420
BsmAI	GTCTC	2 cut(s)	51, 159
Bsp119I	TTCGAA	2 cut(s)	135, 301
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp13I	TCCGGA	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	282, 416
BspACI	CCGC	1 cut(s)	371
BspEI	TCCGGA	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	180, 418
BspPI	GGATC	2 cut(s)	411, 424
BspT104I	TTCGAA	2 cut(s)	135, 301
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	282, 416
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
BstBI	TTCGAA	2 cut(s)	135, 301
BstDEI	CTNAG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	285, 419
BstMAI	GTCTC	2 cut(s)	51, 159
BstMBI	GATC	2 cut(s)	282, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstV2I	GAAGAC	2 cut(s)	91, 241
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	6 cut(s)	58, 119, 236, 271, 358, 439
CviKI_1	RGCY	6 cut(s)	58, 119, 236, 271, 358, 439
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	284, 418
DpnII	GATC	2 cut(s)	282, 416
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	407
EcoT22I	ATGCAT	1 cut(s)	232
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	170, 258, 266
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	371
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	1 cut(s)	371
HapII	CCGG	3 cut(s)	176, 414, 420
Hin1II	CATG	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	4 cut(s)	62, 68, 246, 331
HpaII	CCGG	3 cut(s)	176, 414, 420
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	5 cut(s)	67, 130, 196, 396, 451
Hpy188III	TCNNGA	2 cut(s)	40, 420
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	282, 416
LmnI	GCTCC	3 cut(s)	30, 268, 355
LpnPI	CCDG	6 cut(s)	35, 63, 189, 338, 427, 433
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	150
MalI	GATC	2 cut(s)	284, 418
MboI	GATC	2 cut(s)	282, 416
MboII	GAAGA	3 cut(s)	91, 241, 315
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	5 cut(s)	20, 73, 381, 407, 463
MlyI	GAGTC	3 cut(s)	56, 255, 340
MnlI	CCTC	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	232
MroI	TCCGGA	1 cut(s)	419
MseI	TTAA	2 cut(s)	273, 466
MslI	CAYNNNNRTG	1 cut(s)	259
MspI	CCGG	3 cut(s)	176, 414, 420
MunI	CAATTG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	2 cut(s)	282, 416
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	180, 418
NmeAIII	GCCGAG	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	232
NspV	TTCGAA	2 cut(s)	135, 301
OliI	CACNNNNGTG	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	3 cut(s)	56, 254, 339
PpsI	GAGTC	3 cut(s)	56, 254, 339
PspN4I	GGNNCC	2 cut(s)	180, 418
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	273, 466
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	2 cut(s)	282, 416
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	3 cut(s)	56, 255, 340
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	217
SfuI	TTCGAA	2 cut(s)	135, 301
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	20, 73, 381, 407, 463
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	59
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	135, 301
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	5 cut(s)	20, 73, 381, 407, 463
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	273, 466
Tru9I	TTAA	2 cut(s)	273, 466
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	407
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.