Rmu_sc0021251.1_g000001

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021251.1
OG0000202
Physical Location & Seq
Reverse (-)
2 .. 320
319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021251.1_g000001.1.cds

Sequence Viewer

Length: 319 bp
atggagcttaataatgtgatctcacgcttcaactttcgaagatttacttttgtcgcaaaggtaaagagtcggttgaccaaattaaagcaggagcttgagaacttgccgcaacaaccaattggcaatcctcggacaaagactgaattcaccggatccggacctaaagtaccttcagccaaagtttttggatttgatgagcaattaaaggagattaatgaggagttgctacaagcaggggtttccagttctagcagtgctggtgaactgagggcaattggggtagttggaattgctggagtgggtaagaccaccctggttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

106

Amino Acids

11.54

Weight (kDa)

9.89

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 1 cut(s) 107
AclWI GGATC 2 cut(s) 147, 160
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 168
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 2 cut(s) 7, 94
AluI AGCT 2 cut(s) 7, 94
AlwI GGATC 2 cut(s) 147, 160
Aor13HI TCCGGA 1 cut(s) 155
ApoI RAATTY 1 cut(s) 143
AseI ATTAAT 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 139, 272
AsuII TTCGAA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 314
BfaI CTAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 128, 312
BsaWI WCCGGW 2 cut(s) 149, 155
Bse1I ACTGG 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 128, 312
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 1 cut(s) 233
BsiSI CCGG 2 cut(s) 150, 156
Bsp119I TTCGAA 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 18, 152
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 147, 160
BspT104I TTCGAA 1 cut(s) 37
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 128, 312
BssMI GATC 2 cut(s) 18, 152
Bst2UI CCWGG 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 266
BstKTI GATC 2 cut(s) 21, 155
BstMBI GATC 2 cut(s) 18, 152
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 167
CviJI RGCY 3 cut(s) 7, 94, 176
CviKI_1 RGCY 3 cut(s) 7, 94, 176
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 20, 154
DpnII GATC 2 cut(s) 18, 152
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 312
FalI AAGNNNNNCTT 2 cut(s) 31, 63
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 315
HapII CCGG 2 cut(s) 150, 156
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 1 cut(s) 67
HpaII CCGG 2 cut(s) 150, 156
HphI GGTGA 2 cut(s) 139, 272
Hpy166II GTNNAC 2 cut(s) 75, 263
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 2 cut(s) 75, 263
HpyAV CCTTC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 266
Kpn2I TCCGGA 1 cut(s) 155
Kzo9I GATC 2 cut(s) 18, 152
LmnI GCTCC 2 cut(s) 4, 91
LpnPI CCDG 8 cut(s) 74, 163, 169, 219, 243, 256, 279, 299
MaeI CTAG 1 cut(s) 249
MalI GATC 2 cut(s) 20, 154
MboI GATC 2 cut(s) 18, 152
MboII GAAGA 1 cut(s) 51
MfeI CAATTG 2 cut(s) 117, 273
MflI RGATCY 1 cut(s) 152
MluCI AATT 6 cut(s) 80, 117, 143, 200, 273, 288
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 3 cut(s) 138, 211, 261
MroI TCCGGA 1 cut(s) 155
MseI TTAA 4 cut(s) 9, 83, 203, 213
MspI CCGG 2 cut(s) 150, 156
MspR9I CCNGG 1 cut(s) 314
MunI CAATTG 2 cut(s) 117, 273
MvaI CCWGG 1 cut(s) 314
NdeII GATC 2 cut(s) 18, 152
NlaIV GGNNCC 1 cut(s) 154
NspV TTCGAA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SaqAI TTAA 4 cut(s) 9, 83, 203, 213
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 18, 152
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 314
SetI ASST 5 cut(s) 9, 63, 96, 163, 172
SfuI TTCGAA 1 cut(s) 37
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 6 cut(s) 80, 117, 143, 200, 273, 288
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 312
TaqI TCGA 1 cut(s) 37
TasI AATT 6 cut(s) 80, 117, 143, 200, 273, 288
TauI GCSGC 1 cut(s) 109
Tru1I TTAA 4 cut(s) 9, 83, 203, 213
Tru9I TTAA 4 cut(s) 9, 83, 203, 213
TscAI CASTG 1 cut(s) 259
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 1 cut(s) 143
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.