RchiOBHm_Chr7g0229661

Diacylglycerol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000202
Physical Location & Seq
Forward (+)
53217866 .. 53218871
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20574

Sequence Viewer

Length: 543 bp
ATGGAGGCGAAGATTGTTGGCCTTGAGAAGCTCCTGGAAAGGCTAAGCCGCCTGCTGTTATCGGATAAATGCTATTTGATTGTGTTGGATGATGTGTGTCATCGGCACATTAACATTATGGAACGCTTATGCAGCGGATTGCCCAAGCATAATGGTGGTGTTGTCATTGTCACTACTAGATTGAAGGAAGTGGCTCAAAAGCTGGGGAAACAACATAGATTGCATCTGGTTCATGTTAAGCCTCTGGACAGAGAGATTTGCGGGCGTATATTTGAGGAGCAGGCTTATTCCATTAGAAAAAGTTCAAACCTCTCACATGATGAGGCTACGAGAAAGATGGAGGAACTCAAGGATCAGTGCCATGGTCTACCGTTGGTTGCGAAGACGATAGCAAATGCTTTTGCAGTGGGATTTGGAGGCGACGGATCTGAAGAGAGAGATGGAGATCACGGGGAGGAAGTAGGAACTTTTGAAGAATCAGTTGAAGACGACCAGGGTTCAAGAATTGCTGACCTGACCCATCATGTTCAAGAATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAGK_acc DAGK_cat NB-ARC

Protein Analysis

180

Amino Acids

20.16

Weight (kDa)

5.87

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 11 - 96 9.7e-10 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 367
AciI CCGC 3 cut(s) 49, 135, 261
AclWI GGATC 2 cut(s) 360, 433
AcuI CTGAAG 1 cut(s) 450
AgsI TTSAA 6 cut(s) 184, 306, 473, 485, 501, 530
AjnI CCWGG 2 cut(s) 33, 492
AluBI AGCT 2 cut(s) 31, 202
AluI AGCT 2 cut(s) 31, 202
AlwI GGATC 2 cut(s) 360, 433
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 389, 492
BbvI GCAGC 1 cut(s) 144
BccI CCATC 3 cut(s) 331, 434, 528
BciT130I CCWGG 2 cut(s) 35, 494
BfaI CTAG 1 cut(s) 177
BisI GCNGC 2 cut(s) 49, 133
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 2 cut(s) 50, 134
Bme1390I CCNGG 2 cut(s) 35, 494
BmrFI CCNGG 2 cut(s) 35, 494
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 389, 492
Bpu1102I GCTNAGC 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 44, 332
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 361, 493
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 2 cut(s) 35, 494
BseDI CCNNGG 2 cut(s) 361, 493
BseGI GGATG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 21
BsnI GGCC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 352, 425, 445
Bsp1720I GCTNAGC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 3 cut(s) 49, 135, 261
BspANI GGCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 360, 433
BssECI CCNNGG 2 cut(s) 361, 493
BssMI GATC 3 cut(s) 352, 425, 445
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 35, 494
Bst4CI ACNGT 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 3 cut(s) 53, 263, 282
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 3 cut(s) 355, 428, 448
BstMBI GATC 3 cut(s) 352, 425, 445
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 35, 494
BstSCI CCNGG 2 cut(s) 33, 492
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 2 cut(s) 389, 492
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BsuRI GGCC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 362, 411
Cac8I GCNNGC 3 cut(s) 53, 263, 282
CviAII CATG 4 cut(s) 233, 317, 362, 524
CviJI RGCY 9 cut(s) 21, 31, 43, 48, 194, 202, 241, 284, 326
CviKI_1 RGCY 9 cut(s) 21, 31, 43, 48, 194, 202, 241, 284, 326
DdeI CTNAG 1 cut(s) 44
DpnI GATC 3 cut(s) 354, 427, 447
DpnII GATC 3 cut(s) 352, 425, 445
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 33, 492
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 4 cut(s) 236, 320, 365, 527
FaiI YATR 9 cut(s) 119, 130, 150, 216, 234, 269, 318, 363, 525
FatI CATG 4 cut(s) 232, 316, 361, 523
FauI CCCGC 1 cut(s) 254
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 49, 133
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 49, 133
FspBI CTAG 1 cut(s) 177
GluI GCNGC 2 cut(s) 49, 133
GsaI CCCAGC 1 cut(s) 206
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 4 cut(s) 236, 320, 365, 527
HinfI GANTC 2 cut(s) 476, 533
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 64, 430
Hpy188III TCNNGA 4 cut(s) 245, 501, 530, 540
Hpy8I GTNNAC 1 cut(s) 368
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 132, 223, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 4 cut(s) 236, 320, 365, 527
Kzo9I GATC 3 cut(s) 352, 425, 445
LmnI GCTCC 2 cut(s) 36, 277
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 354, 427, 447
MboI GATC 3 cut(s) 352, 425, 445
MboII GAAGA 6 cut(s) 22, 394, 443, 485, 497, 528
MflI RGATCY 1 cut(s) 425
MluCI AATT 1 cut(s) 504
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 7 cut(s) 252, 268, 316, 320, 334, 410, 448
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 2 cut(s) 111, 237
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 35, 494
MvaI CCWGG 2 cut(s) 35, 494
MwoI GCNNNNNNNGC 1 cut(s) 132
NcoI CCATGG 1 cut(s) 361
NdeII GATC 3 cut(s) 352, 425, 445
NlaIII CATG 4 cut(s) 236, 320, 365, 527
NmuCI GTSAC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 476, 533
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 2 cut(s) 50, 134
Psp6I CCWGG 2 cut(s) 33, 492
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 2 cut(s) 33, 492
PsuI RGATCY 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 111, 237
SatI GCNGC 2 cut(s) 49, 133
Sau3AI GATC 3 cut(s) 352, 425, 445
ScrFI CCNGG 2 cut(s) 35, 494
SetI ASST 4 cut(s) 33, 204, 312, 516
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 23, 347
SmoI CTYRAG 2 cut(s) 23, 347
Sse9I AATT 1 cut(s) 504
SsiI CCGC 3 cut(s) 49, 135, 261
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 33, 492
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 372
TasI AATT 1 cut(s) 504
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 476, 533
Tru1I TTAA 2 cut(s) 111, 237
Tru9I TTAA 2 cut(s) 111, 237
TscAI CASTG 2 cut(s) 362, 411
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 2 cut(s) 362, 411
XmiI GTMKAC 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.