Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Reverse (-)

77309404 .. 77313514

Gene Structure 4111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG597400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATGAGATTCTGCATCAAGTTTGTACGTGGCCTACCATCAATCGGCAAGACTCTGGCAGACTTGATCATTGCAAATCAGATTGGTCAAAATGATTATAATAGGTCTGCCCTGAAGAAGATGTTGATACCTCATGAAATTCTTATTCAATGTTCATGGGTGACTGTTGCGACAAAAGACAAGAAAGCGAAATGGATTCAGGATAAAACCGAAGTATCAAAATGTCCAATATTTGTGTTTATTGATTTAAGAAGTGACCAAGTAGGAGATCTTGCTGAAGACCTTCGCTACCAGCTTAATCGTGAGCAGGTCATTGCTGTTCTGCACGAGAGTTTCTATAACAAGTATAAATTATCGACAGTGAACCCAGATAGGGCGCTGACTGAGGTTTATGGTGCTCTAGCAACGCTTAAGGGTGTAGGACATAACTTTGCTGACGAAATTCAAAAGAAGATGACAATTATAATTGTTGGTGAGGATGTTTTTATAAACTGGTTTTTGGCAGTTTTCTGTGATCTAAATTTGCCAGACTCACCCTCCATTGTTCCCATAGCACTCGGAATCAAGAGTAACATCCCATTCTCCTTTGGATGGGAGTTTGATGCTATGAAACCAGTGAACAAGATCTTGGAGACGGTTCTAAATCATACAAAACAGATCAAAGCTGACAGCTGGCATATCCTCATCAACTTGAAAGCCATTCCTACAGATCATCAAGAATTACCATATTGTCTGCATTTATGTACTCCTGTTGATGAACCAGATAAGGAAAATGTGGTAACAACTGAAGTTCCAAGTGCTACGTTCTTTGGTTTTGTTTTTCAGTTCTACTCCTTGAAAAGCACTACTTTGATCGAGATCTCCTCTTTCTTGCTTTATGATCATGAGATTCTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat Lectin_C NB-ARC VWD

Protein Analysis

299

Amino Acids

34.05

Weight (kDa)

5.92

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	99, 464, 488
Acc36I	ACCTGC	1 cut(s)	298
AcsI	RAATTY	3 cut(s)	138, 441, 520
AcuI	CTGAAG	3 cut(s)	134, 297, 807
AfaI	GTAC	2 cut(s)	27, 745
AfiI	CCNNNNNNNGG	3 cut(s)	44, 373, 591
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	4 cut(s)	149, 446, 694, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	3 cut(s)	295, 665, 672
AluI	AGCT	3 cut(s)	295, 665, 672
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	31
ApoI	RAATTY	3 cut(s)	138, 441, 520
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	379
AsuHPI	GGTGA	3 cut(s)	172, 485, 525
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BauI	CACGAG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	400
BccI	CCATC	2 cut(s)	46, 585
BclI	TGATCA	2 cut(s)	66, 880
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	380
BfrI	CTTAAG	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	298
BglII	AGATCT	3 cut(s)	268, 624, 858
BmsI	GCATC	2 cut(s)	24, 592
BpiI	GAAGAC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	857
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 373, 591
Bse1I	ACTGG	2 cut(s)	497, 614
Bse3DI	GCAATG	2 cut(s)	69, 312
Bse8I	GATNNNNATC	1 cut(s)	857
BseGI	GGATG	3 cut(s)	484, 573, 596
BseJI	GATNNNNATC	1 cut(s)	857
BseLI	CCNNNNNNNGG	3 cut(s)	44, 373, 591
BseMI	GCAATG	2 cut(s)	69, 312
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	497, 614
BseRI	GAGGAG	1 cut(s)	853
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	44, 373, 591
BsmAI	GTCTC	1 cut(s)	626
BsmBI	CGTCTC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	2 cut(s)	133, 883
BspMI	ACCTGC	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	69, 312
BsrI	ACTGG	2 cut(s)	497, 614
BssMI	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	166, 361, 637
BstAFI	CTTAAG	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	674
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	484, 573, 596
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	9 cut(s)	69, 271, 517, 627, 660, 712, 855, 861, 883
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
BstSFI	CTRYAG	1 cut(s)	705
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	3 cut(s)	268, 624, 858
BstYI	RGATCY	3 cut(s)	268, 624, 858
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	484, 573, 596
BtsIMutI	CAGTG	2 cut(s)	366, 621
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	674
CciI	TCATGA	2 cut(s)	133, 883
CfoI	GCGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	26, 744
CviAII	CATG	3 cut(s)	134, 156, 884
CviJI	RGCY	5 cut(s)	33, 295, 665, 672, 698
CviKI_1	RGCY	5 cut(s)	33, 295, 665, 672, 698
CviQI	GTAC	2 cut(s)	26, 744
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	9 cut(s)	68, 270, 516, 626, 659, 711, 854, 860, 882
DpnII	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
Eco57I	CTGAAG	3 cut(s)	134, 297, 807
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	3 cut(s)	137, 159, 887
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FatI	CATG	3 cut(s)	133, 155, 883
FbaI	TGATCA	2 cut(s)	66, 880
FokI	GGATG	3 cut(s)	491, 560, 603
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	137, 159, 887
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	6 cut(s)	9, 52, 196, 530, 561, 889
HphI	GGTGA	3 cut(s)	172, 485, 525
Hpy166II	GTNNAC	2 cut(s)	364, 619
Hpy188I	TCNGA	2 cut(s)	81, 560
Hpy188III	TCNNGA	7 cut(s)	134, 200, 302, 565, 716, 856, 884
Hpy8I	GTNNAC	2 cut(s)	364, 619
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	3 cut(s)	166, 361, 637
HpyCH4IV	ACGT	2 cut(s)	28, 803
HpyCH4V	TGCA	4 cut(s)	15, 74, 325, 736
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	2 cut(s)	28, 803
Hsp92II	CATG	3 cut(s)	137, 159, 887
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	2 cut(s)	66, 880
Kzo9I	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
LweI	GCATC	2 cut(s)	24, 592
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	2 cut(s)	28, 803
MaeIII	GTNAC	4 cut(s)	160, 254, 569, 778
MalI	GATC	9 cut(s)	68, 270, 516, 626, 659, 711, 854, 860, 882
MboI	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
MboII	GAAGA	4 cut(s)	127, 130, 290, 463
MflI	RGATCY	3 cut(s)	268, 624, 858
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	7 cut(s)	138, 350, 441, 459, 465, 520, 719
MlyI	GAGTC	2 cut(s)	46, 524
MnlI	CCTC	6 cut(s)	141, 379, 469, 547, 692, 874
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	3 cut(s)	248, 297, 411
MspA1I	CMGCKG	1 cut(s)	672
MspCI	CTTAAG	1 cut(s)	410
NdeII	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
NlaIII	CATG	3 cut(s)	137, 159, 887
NmuCI	GTSAC	2 cut(s)	160, 254
PagI	TCATGA	2 cut(s)	133, 883
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	4 cut(s)	9, 196, 561, 889
PleI	GAGTC	2 cut(s)	46, 524
PpsI	GAGTC	2 cut(s)	46, 524
Ppu21I	YACGTR	1 cut(s)	29
PsiI	TTATAA	3 cut(s)	99, 464, 488
PsuI	RGATCY	3 cut(s)	268, 624, 858
PvuII	CAGCTG	1 cut(s)	672
RsaI	GTAC	2 cut(s)	27, 745
RsaNI	GTAC	2 cut(s)	26, 744
SaqAI	TTAA	3 cut(s)	248, 297, 411
Sau3AI	GATC	9 cut(s)	66, 268, 514, 624, 657, 709, 852, 858, 880
SchI	GAGTC	2 cut(s)	46, 524
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	24, 592
SfcI	CTRYAG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	7 cut(s)	138, 350, 441, 459, 465, 520, 719
SspI	AATATT	1 cut(s)	231
SspMI	CTAG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	166, 361, 637
TaiI	ACGT	2 cut(s)	31, 806
TaqI	TCGA	2 cut(s)	356, 855
TasI	AATT	7 cut(s)	138, 350, 441, 459, 465, 520, 719
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	4 cut(s)	9, 196, 561, 889
Tru1I	TTAA	3 cut(s)	248, 297, 411
Tru9I	TTAA	3 cut(s)	248, 297, 411
TscAI	CASTG	2 cut(s)	366, 621
TseFI	GTSAC	2 cut(s)	160, 254
Tsp45I	GTSAC	2 cut(s)	160, 254
TspDTI	ATGAA	4 cut(s)	144, 150, 623, 771
TspRI	CASTG	2 cut(s)	366, 621
Vha464I	CTTAAG	1 cut(s)	410
XapI	RAATTY	3 cut(s)	138, 441, 520
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.