RLG00000018011

ADP binding

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
24408597 .. 24409864
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018011

Sequence Viewer

Length: 711 bp
ATGACATTTATGGAAATTGGGGTAATAAGCAAAAGCTTAGTGGCGAGGATTGTCGGTCTGGATAGTCTCCTGGAAAGGCTGCACCAACTGTTGTTGGATGAAAGCTATTTGATTGTGTTGGATGATATTGAAGGAAGTGGCTCAAAAGCTTGGGAAACACATCACTTTGTTCGTGAGCCTCTGCCAGGAAAAGATTGCTCGTGTATATTTGAGAAGATCATTGAGAATGAGAAGAAATCATCAAGCATCTCACCTGAAGTTTTTGAATTTCGTGACGAATCAAAGCAGATTGAGGACTTGCTACTCCTTGAAGAGGGTTCTAGTTCTAGCAGTGCTCGTAGGTTGAGGGCGGTATTTGGCACTGCTGGGGTGGGTAAGACCACCCTGGTGCTGAAGGTTTTGGAGAGCCAGAGATGTGAAGGCCAACACATTAACATTATGGAACGCTTTGTCAGTGGATTGTCCAAGGCTAGTGGTGTAGCTCTCATTGTCACCAGTGGATTGAGGGAAGTGGCTCAAAAGCTTGGGGAACAAAAACACCTGGTTCATGTTGAGCCACAGGAAGAGGTTTGCTCGCAAATGCTTGATAAGAAATTGTCAAGCATCTCACAAGGCGAAAGCAACGAAACGTTGGAAAAAGTAACAAATGAATGTCATGGTCTACCGTTGGTTGCAAAAACAATTGCACATTTTGTTCATGAAATTTTATAG

Protein Analysis

237

Amino Acids

26.14

Weight (kDa)

5.43

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 661
AciI CCGC 1 cut(s) 350
AclI AACGTT 1 cut(s) 629
AcsI RAATTY 2 cut(s) 266, 702
AcuI CTGAAG 2 cut(s) 276, 413
AfiI CCNNNNNNNGG 2 cut(s) 185, 313
AgsI TTSAA 3 cut(s) 131, 266, 311
AjnI CCWGG 4 cut(s) 69, 184, 384, 540
AleI CACNNNNGTG 1 cut(s) 386
AluBI AGCT 5 cut(s) 36, 105, 149, 482, 523
AluI AGCT 5 cut(s) 36, 105, 149, 482, 523
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 266, 702
AsuHPI GGTGA 2 cut(s) 243, 484
BauI CACGAG 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 66
BciT130I CCWGG 4 cut(s) 71, 186, 386, 542
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 321, 327, 471
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 4 cut(s) 71, 186, 386, 542
BmrFI CCNGG 4 cut(s) 71, 186, 386, 542
BmsI GCATC 2 cut(s) 255, 612
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BsaJI CCNNGG 2 cut(s) 384, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 313
Bse1I ACTGG 1 cut(s) 495
BseBI CCWGG 4 cut(s) 71, 186, 386, 542
BseDI CCNNGG 2 cut(s) 384, 465
BseGI GGATG 2 cut(s) 103, 127
BseLI CCNNNNNNNGG 2 cut(s) 185, 313
BseNI ACTGG 1 cut(s) 495
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 365
BsgI GTGCAG 1 cut(s) 65
BshFI GGCC 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 337
BslI CCNNNNNNNGG 2 cut(s) 185, 313
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 423
BspHI TCATGA 1 cut(s) 697
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 2 cut(s) 384, 465
BssMI GATC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 199
Bst2UI CCWGG 4 cut(s) 71, 186, 386, 542
Bst4CI ACNGT 2 cut(s) 90, 666
Bst6I CTCTTC 2 cut(s) 306, 558
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 1 cut(s) 37
BstENI CCTNNNNNAGG 2 cut(s) 183, 311
BstF5I GGATG 2 cut(s) 103, 127
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 216
BstNI CCWGG 4 cut(s) 71, 186, 386, 542
BstSCI CCNGG 4 cut(s) 69, 184, 384, 540
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 423
BtsCI GGATG 2 cut(s) 103, 127
BtsI GCAGTG 2 cut(s) 337, 360
BtsIMutI CAGTG 4 cut(s) 337, 360, 460, 502
Cac8I GCNNGC 1 cut(s) 575
CciI TCATGA 1 cut(s) 697
CsiI ACCWGGT 1 cut(s) 540
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 3 cut(s) 548, 656, 698
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 306, 558
EarI CTCTTC 2 cut(s) 306, 558
Eco130I CCWWGG 1 cut(s) 465
Eco57I CTGAAG 2 cut(s) 276, 413
EcoNI CCTNNNNNAGG 2 cut(s) 183, 311
EcoRII CCWGG 4 cut(s) 69, 184, 384, 540
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 551, 659, 701
FaiI YATR 7 cut(s) 11, 206, 440, 549, 657, 699, 709
FatI CATG 3 cut(s) 547, 655, 697
FblI GTMKAC 1 cut(s) 661
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 110, 134
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 3 cut(s) 321, 327, 471
GluI GCNGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 369
HaeIII GGCC 1 cut(s) 423
Hin1II CATG 3 cut(s) 551, 659, 701
HindIII AAGCTT 3 cut(s) 34, 147, 521
HinfI GANTC 1 cut(s) 278
HphI GGTGA 2 cut(s) 243, 484
Hpy166II GTNNAC 1 cut(s) 662
Hpy188III TCNNGA 4 cut(s) 59, 173, 272, 698
Hpy8I GTNNAC 1 cut(s) 662
HpyAV CCTTC 3 cut(s) 125, 388, 413
HpyCH4III ACNGT 2 cut(s) 90, 666
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 3 cut(s) 82, 674, 686
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 3 cut(s) 551, 659, 701
Kzo9I GATC 1 cut(s) 216
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 255, 612
MabI ACCWGGT 1 cut(s) 540
MaeI CTAG 3 cut(s) 321, 327, 471
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 3 cut(s) 272, 490, 640
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 4 cut(s) 226, 244, 323, 575
MfeI CAATTG 1 cut(s) 681
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 5 cut(s) 15, 266, 593, 681, 702
MmeI TCCRAC 3 cut(s) 75, 99, 612
MnlI CCTC 7 cut(s) 39, 189, 286, 307, 339, 498, 559
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 386
MspR9I CCNGG 4 cut(s) 71, 186, 386, 542
MunI CAATTG 1 cut(s) 681
MvaI CCWGG 4 cut(s) 71, 186, 386, 542
NdeII GATC 1 cut(s) 216
NlaIII CATG 3 cut(s) 551, 659, 701
NmuCI GTSAC 2 cut(s) 272, 490
OliI CACNNNNGTG 1 cut(s) 386
PagI TCATGA 1 cut(s) 697
PfeI GAWTC 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 1 cut(s) 81
Psp1406I AACGTT 1 cut(s) 629
Psp6I CCWGG 4 cut(s) 69, 184, 384, 540
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 4 cut(s) 69, 184, 384, 540
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 216
ScrFI CCNGG 4 cut(s) 71, 186, 386, 542
SduI GDGCHC 1 cut(s) 337
SexAI ACCWGGT 1 cut(s) 540
SfaNI GCATC 2 cut(s) 255, 612
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 5 cut(s) 15, 266, 593, 681, 702
SsiI CCGC 1 cut(s) 350
SspMI CTAG 3 cut(s) 321, 327, 471
StyD4I CCNGG 4 cut(s) 69, 184, 384, 540
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 90, 666
TaiI ACGT 1 cut(s) 632
TaqII GACCGA 1 cut(s) 44
TasI AATT 5 cut(s) 15, 266, 593, 681, 702
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 4 cut(s) 337, 367, 460, 502
TseFI GTSAC 2 cut(s) 272, 490
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 2 cut(s) 272, 490
TspDTI ATGAA 4 cut(s) 114, 536, 663, 686
TspRI CASTG 4 cut(s) 337, 367, 460, 502
XagI CCTNNNNNAGG 2 cut(s) 183, 311
XapI RAATTY 2 cut(s) 266, 702
XmiI GTMKAC 1 cut(s) 661
XspI CTAG 3 cut(s) 321, 327, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.