Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Reverse (-)

29780643 .. 29781616

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGATTGCTAAATTCCAGGAGTTTGATGCTATGAAACCAGTGAACAAGATCTTGGAGACGGTTCTAAATCATACAAAACAGATCAAAGCTGACAGCTGGCATATCCTCATCAACTTGAAAGCCATTCCTACAGATCATCAAGAATTACCATATTGTCTGAATTTATGTACTCCTGTTGATAAGGAAAATGTGGACAATCGACCATTAATCCGTGGAGAATTTTGGAACTACTTCAGCATTGGTGTTGACGATCCAAGACTGTATGGAGCTTCTCGCTTTCGCCATACTTCAAGGACCTTGAACAGGTTACTTGCAAAAGTAGAGGTTTTAAAACATCATGGTGATCAGTGGGAAATGCTTAGCATTCCTAGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat NB-ARC

Protein Analysis

125

Amino Acids

14.64

Weight (kDa)

8.6

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	11, 160, 218
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	118, 291, 301
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	3 cut(s)	89, 96, 269
AluI	AGCT	3 cut(s)	89, 96, 269
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	245
ApoI	RAATTY	3 cut(s)	11, 160, 218
AseI	ATTAAT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	129
BglII	AGATCT	1 cut(s)	48
BlpI	GCTNAGC	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	16
Bpu1102I	GCTNAGC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	363
Bsp143I	GATC	5 cut(s)	48, 81, 133, 250, 343
Bsp1720I	GCTNAGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	5 cut(s)	48, 81, 133, 250, 343
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	61, 261
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	301
BstKTI	GATC	5 cut(s)	51, 84, 136, 253, 346
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	5 cut(s)	48, 81, 133, 250, 343
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	45, 353
Cac8I	GCNNGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	4 cut(s)	89, 96, 122, 269
CviKI_1	RGCY	4 cut(s)	89, 96, 122, 269
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	5 cut(s)	50, 83, 135, 252, 345
DpnII	GATC	5 cut(s)	48, 81, 133, 250, 343
DraI	TTTAAA	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	341
FaiI	YATR	8 cut(s)	32, 72, 102, 151, 166, 264, 285, 339
FatI	CATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	343
FspBI	CTAG	1 cut(s)	369
Hin1II	CATG	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	43, 193, 247
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	43, 193, 247
HpyCH4III	ACNGT	2 cut(s)	61, 261
HpyCH4V	TGCA	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	359
Hsp92II	CATG	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	48, 81, 133, 250, 343
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	6 cut(s)	2, 29, 51, 82, 186, 289
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	5 cut(s)	50, 83, 135, 252, 345
MboI	GATC	5 cut(s)	48, 81, 133, 250, 343
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	4 cut(s)	11, 143, 160, 218
MnlI	CCTC	2 cut(s)	116, 316
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	206, 329
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	48, 81, 133, 250, 343
NlaIII	CATG	1 cut(s)	341
PctI	GAATGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	294
PspPPI	RGGWCCY	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	206, 329
Sau3AI	GATC	5 cut(s)	48, 81, 133, 250, 343
Sau96I	GGNCC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	7 cut(s)	91, 98, 271, 299, 308, 327, 377
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	11, 143, 160, 218
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	61, 261
TaqI	TCGA	1 cut(s)	199
TasI	AATT	4 cut(s)	11, 143, 160, 218
TatI	WGTACW	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	206, 329
Tru9I	TTAA	2 cut(s)	206, 329
TscAI	CASTG	2 cut(s)	45, 353
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	45, 353
VpaK11BI	GGWCC	1 cut(s)	294
VspI	ATTAAT	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	301
XapI	RAATTY	3 cut(s)	11, 160, 218
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.