Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Reverse (-)

69634170 .. 69635273

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGAAAGATCGGAAAGAGAGATACCTGTTTCCGTCTTTCATAGATGATGGACATCTTCAAATTATTGGTTGCAGAGATGTTTTCTTTCCTCTTAGTGAAGGTTCCATTCACCTTGGCCAGGTACGGGGAATTCGTTTCGAGTTTATTGATGGTGAAGAAGAGGTTGTCAACATGACAATTGATGGAACACCATGGGAGAATATCCCACTTGATGGTACTGGTATCACTGTAATTGAAATCACTCATCACTGTCAAGTCAACATTCTCGCCTATCCATATTGCGATTGCCCACCAAAAAGTATCCACGATCAGGTGGTGATGAATGATGCTTCTGAAAATGATGATGAGAACAATGCTAAAGATTACTCTGAACGACATAAGAAGTTTGGTGCAGCAAGCACTTTCAAACTTACCTGTGCTGATGAAGGATTGAAGGACATGAAACCAATGGTGAAGCAAGCACTTCCAACGTCCTCTAATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

162

Amino Acids

18.33

Weight (kDa)

5.07

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	2 cut(s)	126, 220
AfiI	CCNNNNNNNGG	4 cut(s)	121, 127, 215, 313
AgsI	TTSAA	4 cut(s)	62, 239, 409, 436
AjnI	CCWGG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	132
AsuHPI	GGTGA	4 cut(s)	104, 167, 331, 466
BalI	TGGCCA	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	4 cut(s)	44, 146, 179, 209
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	115, 194
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 127, 215, 313
Bse1I	ACTGG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	115, 194
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	4 cut(s)	121, 127, 215, 313
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	120
BslI	CCNNNNNNNGG	4 cut(s)	121, 127, 215, 313
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	10, 310
Bsp19I	CCATGG	1 cut(s)	194
BspANI	GGCC	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	115, 194
BssMI	GATC	2 cut(s)	10, 310
BssT1I	CCWWGG	2 cut(s)	115, 194
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	232, 254
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	400, 462
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	13, 313
BstMBI	GATC	2 cut(s)	10, 310
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	228, 250
Cac8I	GCNNGC	2 cut(s)	400, 462
Csp6I	GTAC	2 cut(s)	125, 219
CviAII	CATG	3 cut(s)	175, 195, 442
CviJI	RGCY	1 cut(s)	120
CviKI_1	RGCY	1 cut(s)	120
CviQI	GTAC	2 cut(s)	125, 219
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	2 cut(s)	12, 312
DpnII	GATC	2 cut(s)	10, 310
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	115, 194
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	115, 194
ErhI	CCWWGG	2 cut(s)	115, 194
FaeI	CATG	3 cut(s)	178, 198, 445
FaiI	YATR	6 cut(s)	44, 176, 196, 280, 381, 443
FatI	CATG	3 cut(s)	174, 194, 441
Fnu4HI	GCNGC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	178, 198, 445
HincII	GTYRAC	2 cut(s)	172, 262
HindII	GTYRAC	2 cut(s)	172, 262
HphI	GGTGA	4 cut(s)	104, 167, 331, 466
Hpy166II	GTNNAC	2 cut(s)	172, 262
Hpy188I	TCNGA	3 cut(s)	15, 337, 373
Hpy8I	GTNNAC	2 cut(s)	172, 262
HpyAV	CCTTC	3 cut(s)	95, 422, 430
HpyCH4III	ACNGT	2 cut(s)	232, 254
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	2 cut(s)	75, 395
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	3 cut(s)	178, 198, 445
Kzo9I	GATC	2 cut(s)	10, 310
LpnPI	CCDG	6 cut(s)	41, 107, 134, 207, 299, 430
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	1 cut(s)	319
MaeII	ACGT	1 cut(s)	473
MalI	GATC	2 cut(s)	12, 312
MboI	GATC	2 cut(s)	10, 310
MboII	GAAGA	4 cut(s)	16, 50, 170, 173
MfeI	CAATTG	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	4 cut(s)	63, 132, 180, 234
MluNI	TGGCCA	1 cut(s)	120
MnlI	CCTC	3 cut(s)	102, 157, 487
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	10, 310
NlaIII	CATG	3 cut(s)	178, 198, 445
NlaIV	GGNNCC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	106
RsaI	GTAC	2 cut(s)	126, 220
RsaNI	GTAC	2 cut(s)	125, 219
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	10, 310
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	8 cut(s)	30, 106, 117, 126, 168, 318, 419, 476
SfaNI	GCATC	1 cut(s)	319
Sse9I	AATT	4 cut(s)	63, 132, 180, 234
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	115, 194
TaaI	ACNGT	2 cut(s)	232, 254
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	141
TasI	AATT	4 cut(s)	63, 132, 180, 234
TscAI	CASTG	2 cut(s)	235, 257
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	5 cut(s)	17, 31, 338, 441, 458
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	235, 257
Van91I	CCANNNNNTGG	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.