ADP binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 308 - 353 | 5.1e-08 | PPR repeat family |
| PPR | PF01535 | 414 - 440 | 6.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 513 - 553 | 1.3e-08 | PPR repeat family |
| PPR | PF01535 | 513 - 543 | 1.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 811 - 858 | 1.5e-10 | PPR repeat family |
| PPR | PF01535 | 813 - 843 | 4.4e-07 | PPR repeat |
| E_motif | PF20431 | 927 - 986 | 1.4e-11 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 323 |
| AccI | GTMKAC | 1 cut(s) | 1657 |
| AccIII | TCCGGA | 1 cut(s) | 60 |
| AciI | CCGC | 3 cut(s) | 461, 1331, 2877 |
| AclI | AACGTT | 1 cut(s) | 2787 |
| AclWI | GGATC | 2 cut(s) | 1132, 2505 |
| AcoI | YGGCCR | 1 cut(s) | 1899 |
| AcsI | RAATTY | 8 cut(s) | 609, 727, 1069, 1243, 1957, 2251, 2775, 2839 |
| AfaI | GTAC | 5 cut(s) | 736, 866, 1262, 1268, 1775 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 323, 1987, 2883 |
| AflIII | ACRYGT | 2 cut(s) | 1263, 2851 |
| AgeI | ACCGGT | 1 cut(s) | 1652 |
| AhlI | ACTAGT | 1 cut(s) | 545 |
| AjnI | CCWGG | 4 cut(s) | 1155, 1196, 2493, 2947 |
| AleI | CACNNNNGTG | 1 cut(s) | 1043 |
| Alw21I | GWGCWC | 2 cut(s) | 1572, 2272 |
| Alw26I | GTCTC | 9 cut(s) | 235, 798, 1101, 1345, 1493, 1782, 1927, 2263, 2760 |
| Alw44I | GTGCAC | 1 cut(s) | 1568 |
| AlwI | GGATC | 2 cut(s) | 1132, 2505 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 258, 337, 1343 |
| Aor13HI | TCCGGA | 1 cut(s) | 60 |
| AoxI | GGCC | 6 cut(s) | 314, 453, 722, 1025, 1899, 2596 |
| ApaLI | GTGCAC | 1 cut(s) | 1568 |
| ApeKI | GCWGC | 4 cut(s) | 1009, 2489, 2571, 2879 |
| ApoI | RAATTY | 8 cut(s) | 609, 727, 1069, 1243, 1957, 2251, 2775, 2839 |
| AseI | ATTAAT | 2 cut(s) | 1553, 2457 |
| AsiGI | ACCGGT | 1 cut(s) | 1652 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 188, 668 |
| AspS9I | GGNCC | 3 cut(s) | 255, 2668, 2830 |
| AsuHPI | GGTGA | 1 cut(s) | 1636 |
| AsuII | TTCGAA | 2 cut(s) | 830, 1815 |
| AsuNHI | GCTAGC | 1 cut(s) | 743 |
| AvaII | GGWCC | 3 cut(s) | 255, 2668, 2830 |
| BaeGI | GKGCMC | 1 cut(s) | 1572 |
| BbsI | GAAGAC | 1 cut(s) | 2951 |
| Bbv12I | GWGCWC | 2 cut(s) | 1572, 2272 |
| BbvI | GCAGC | 4 cut(s) | 996, 2476, 2583, 2891 |
| BccI | CCATC | 3 cut(s) | 869, 2408, 2883 |
| BceAI | ACGGC | 4 cut(s) | 608, 1706, 1886, 2588 |
| BciT130I | CCWGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| BciVI | GTATCC | 2 cut(s) | 815, 1439 |
| BclI | TGATCA | 3 cut(s) | 342, 447, 1927 |
| BcoDI | GTCTC | 9 cut(s) | 235, 798, 1101, 1345, 1493, 1782, 1927, 2263, 2760 |
| BcuI | ACTAGT | 1 cut(s) | 545 |
| BfaI | CTAG | 8 cut(s) | 546, 567, 744, 894, 1013, 1665, 2675, 2916 |
| BfmI | CTRYAG | 2 cut(s) | 912, 2569 |
| BfuI | GTATCC | 2 cut(s) | 815, 1439 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 461 |
| BglII | AGATCT | 1 cut(s) | 2338 |
| BisI | GCNGC | 6 cut(s) | 462, 1010, 2490, 2572, 2877, 2880 |
| BlpI | GCTNAGC | 1 cut(s) | 2271 |
| BlsI | GCNGC | 6 cut(s) | 463, 1011, 2491, 2573, 2878, 2881 |
| BmcAI | AGTACT | 1 cut(s) | 736 |
| Bme1390I | CCNGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| Bme18I | GGWCC | 3 cut(s) | 255, 2668, 2830 |
| BmgT120I | GGNCC | 3 cut(s) | 255, 2668, 2830 |
| BmiI | GGNNCC | 4 cut(s) | 630, 846, 2229, 2832 |
| BmrFI | CCNGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| BmrI | ACTGGG | 3 cut(s) | 525, 582, 1975 |
| BmsI | GCATC | 8 cut(s) | 996, 1206, 1318, 1324, 1602, 1786, 2422, 2887 |
| BmtI | GCTAGC | 1 cut(s) | 747 |
| BmuI | ACTGGG | 3 cut(s) | 525, 582, 1975 |
| BpiI | GAAGAC | 1 cut(s) | 2951 |
| BpmI | CTGGAG | 1 cut(s) | 2198 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2271 |
| Bpu14I | TTCGAA | 2 cut(s) | 830, 1815 |
| BpuEI | CTTGAG | 2 cut(s) | 1397, 2771 |
| Bsa29I | ATCGAT | 1 cut(s) | 603 |
| BsaAI | YACGTR | 2 cut(s) | 887, 1264 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1482 |
| BsaI | GGTCTC | 3 cut(s) | 1782, 1927, 2263 |
| BsaJI | CCNNGG | 6 cut(s) | 145, 632, 1155, 1573, 2493, 2697 |
| BsaWI | WCCGGW | 5 cut(s) | 60, 619, 999, 1141, 1652 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 323, 1987, 2883 |
| Bse118I | RCCGGY | 1 cut(s) | 1652 |
| Bse1I | ACTGG | 5 cut(s) | 520, 577, 1560, 1867, 1981 |
| Bse3DI | GCAATG | 2 cut(s) | 799, 2394 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1482 |
| BseAI | TCCGGA | 1 cut(s) | 60 |
| BseBI | CCWGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| BseCI | ATCGAT | 1 cut(s) | 603 |
| BseDI | CCNNGG | 6 cut(s) | 145, 632, 1155, 1573, 2493, 2697 |
| BseGI | GGATG | 4 cut(s) | 880, 1011, 1339, 1930 |
| BseJI | GATNNNNATC | 1 cut(s) | 1482 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 323, 1987, 2883 |
| BseMI | GCAATG | 2 cut(s) | 799, 2394 |
| BseMII | CTCAG | 2 cut(s) | 710, 2285 |
| BseNI | ACTGG | 5 cut(s) | 520, 577, 1560, 1867, 1981 |
| BseRI | GAGGAG | 1 cut(s) | 69 |
| BseSI | GKGCMC | 1 cut(s) | 1572 |
| BseXI | GCAGC | 4 cut(s) | 996, 2476, 2583, 2891 |
| BseYI | CCCAGC | 4 cut(s) | 869, 1799, 2761, 2882 |
| BsgI | GTGCAG | 1 cut(s) | 573 |
| BshFI | GGCC | 6 cut(s) | 316, 455, 724, 1027, 1901, 2598 |
| BshTI | ACCGGT | 1 cut(s) | 1652 |
| BshVI | ATCGAT | 1 cut(s) | 603 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1572, 2272 |
| BsiSI | CCGG | 6 cut(s) | 61, 83, 620, 1000, 1142, 1653 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 323, 1987, 2883 |
| BsmAI | GTCTC | 9 cut(s) | 235, 798, 1101, 1345, 1493, 1782, 1927, 2263, 2760 |
| BsmBI | CGTCTC | 1 cut(s) | 1493 |
| BsmI | GAATGC | 5 cut(s) | 643, 946, 1855, 2149, 2371 |
| BsnI | GGCC | 6 cut(s) | 316, 455, 724, 1027, 1901, 2598 |
| Bso31I | GGTCTC | 3 cut(s) | 1782, 1927, 2263 |
| Bsp119I | TTCGAA | 2 cut(s) | 830, 1815 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1572, 2272 |
| Bsp13I | TCCGGA | 1 cut(s) | 60 |
| Bsp1407I | TGTACA | 1 cut(s) | 1266 |
| Bsp143I | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2271 |
| Bsp19I | CCATGG | 1 cut(s) | 1573 |
| BspACI | CCGC | 3 cut(s) | 461, 1331, 2877 |
| BspANI | GGCC | 6 cut(s) | 316, 455, 724, 1027, 1901, 2598 |
| BspCNI | CTCAG | 2 cut(s) | 711, 2284 |
| BspDI | ATCGAT | 1 cut(s) | 603 |
| BspEI | TCCGGA | 1 cut(s) | 60 |
| BspLI | GGNNCC | 4 cut(s) | 630, 846, 2229, 2832 |
| BspMAI | CTGCAG | 1 cut(s) | 2573 |
| BspOI | GCTAGC | 1 cut(s) | 747 |
| BspPI | GGATC | 2 cut(s) | 1132, 2505 |
| BspT104I | TTCGAA | 2 cut(s) | 830, 1815 |
| BspTNI | GGTCTC | 3 cut(s) | 1782, 1927, 2263 |
| BsrDI | GCAATG | 2 cut(s) | 799, 2394 |
| BsrFI | RCCGGY | 1 cut(s) | 1652 |
| BsrGI | TGTACA | 1 cut(s) | 1266 |
| BsrI | ACTGG | 5 cut(s) | 520, 577, 1560, 1867, 1981 |
| BssAI | RCCGGY | 1 cut(s) | 1652 |
| BssECI | CCNNGG | 6 cut(s) | 145, 632, 1155, 1573, 2493, 2697 |
| BssMI | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| BssNAI | GTATAC | 1 cut(s) | 1658 |
| BssT1I | CCWWGG | 3 cut(s) | 145, 632, 1573 |
| Bst1107I | GTATAC | 1 cut(s) | 1658 |
| Bst2UI | CCWGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| Bst4CI | ACNGT | 3 cut(s) | 1837, 2106, 2191 |
| Bst6I | CTCTTC | 5 cut(s) | 801, 1104, 2049, 2266, 2919 |
| BstAUI | TGTACA | 1 cut(s) | 1266 |
| BstBAI | YACGTR | 2 cut(s) | 887, 1264 |
| BstBI | TTCGAA | 2 cut(s) | 830, 1815 |
| BstC8I | GCNNGC | 8 cut(s) | 329, 745, 1366, 1968, 1972, 2210, 2569, 2659 |
| BstDEI | CTNAG | 3 cut(s) | 719, 1526, 2271 |
| BstDSI | CCRYGG | 1 cut(s) | 1573 |
| BstEII | GGTNACC | 1 cut(s) | 1642 |
| BstF5I | GGATG | 4 cut(s) | 880, 1011, 1339, 1930 |
| BstKTI | GATC | 8 cut(s) | 345, 450, 603, 718, 1127, 1930, 2341, 2500 |
| BstMAI | GTCTC | 9 cut(s) | 235, 798, 1101, 1345, 1493, 1782, 1927, 2263, 2760 |
| BstMBI | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 171, 363, 461, 470, 647, 1463, 2515 |
| BstNI | CCWGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| BstNSI | RCATGY | 3 cut(s) | 1774, 1974, 2855 |
| BstPI | GGTNACC | 1 cut(s) | 1642 |
| BstSCI | CCNGG | 4 cut(s) | 1155, 1196, 2493, 2947 |
| BstSFI | CTRYAG | 2 cut(s) | 912, 2569 |
| BstSLI | GKGCMC | 1 cut(s) | 1572 |
| BstV1I | GCAGC | 4 cut(s) | 996, 2476, 2583, 2891 |
| BstV2I | GAAGAC | 1 cut(s) | 2951 |
| BstX2I | RGATCY | 2 cut(s) | 2338, 2497 |
| BstYI | RGATCY | 2 cut(s) | 2338, 2497 |
| BstZ17I | GTATAC | 1 cut(s) | 1658 |
| Bsu15I | ATCGAT | 1 cut(s) | 603 |
| BsuI | GTATCC | 2 cut(s) | 815, 1439 |
| BsuRI | GGCC | 6 cut(s) | 316, 455, 724, 1027, 1901, 2598 |
| BsuTUI | ATCGAT | 1 cut(s) | 603 |
| BtgI | CCRYGG | 1 cut(s) | 1573 |
| BtsCI | GGATG | 4 cut(s) | 880, 1011, 1339, 1930 |
| BtsIMutI | CAGTG | 2 cut(s) | 718, 2196 |
| Cac8I | GCNNGC | 8 cut(s) | 329, 745, 1366, 1968, 1972, 2210, 2569, 2659 |
| CaiI | CAGNNNCTG | 3 cut(s) | 258, 337, 1343 |
| Cfr10I | RCCGGY | 1 cut(s) | 1652 |
| Cfr13I | GGNCC | 3 cut(s) | 255, 2668, 2830 |
| ClaI | ATCGAT | 1 cut(s) | 603 |
| Csp6I | GTAC | 5 cut(s) | 735, 865, 1261, 1267, 1774 |
| CspAI | ACCGGT | 1 cut(s) | 1652 |
| CviQI | GTAC | 5 cut(s) | 735, 865, 1261, 1267, 1774 |
| DdeI | CTNAG | 3 cut(s) | 719, 1526, 2271 |
| DpnI | GATC | 8 cut(s) | 344, 449, 602, 717, 1126, 1929, 2340, 2499 |
| DpnII | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| DraI | TTTAAA | 1 cut(s) | 2110 |
| EaeI | YGGCCR | 1 cut(s) | 1899 |
| Eam1104I | CTCTTC | 5 cut(s) | 801, 1104, 2049, 2266, 2919 |
| EarI | CTCTTC | 5 cut(s) | 801, 1104, 2049, 2266, 2919 |
| Eco130I | CCWWGG | 3 cut(s) | 145, 632, 1573 |
| Eco147I | AGGCCT | 2 cut(s) | 455, 1027 |
| Eco31I | GGTCTC | 3 cut(s) | 1782, 1927, 2263 |
| Eco47I | GGWCC | 3 cut(s) | 255, 2668, 2830 |
| Eco91I | GGTNACC | 1 cut(s) | 1642 |
| EcoO109I | RGGNCCY | 1 cut(s) | 255 |
| EcoO65I | GGTNACC | 1 cut(s) | 1642 |
| EcoRI | GAATTC | 3 cut(s) | 609, 1243, 2775 |
| EcoRII | CCWGG | 4 cut(s) | 1155, 1196, 2493, 2947 |
| EcoT14I | CCWWGG | 3 cut(s) | 145, 632, 1573 |
| EcoT22I | ATGCAT | 4 cut(s) | 643, 1411, 1459, 2396 |
| ErhI | CCWWGG | 3 cut(s) | 145, 632, 1573 |
| Esp3I | CGTCTC | 1 cut(s) | 1493 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1622, 1654 |
| FauNDI | CATATG | 1 cut(s) | 2390 |
| FbaI | TGATCA | 3 cut(s) | 342, 447, 1927 |
| FblI | GTMKAC | 1 cut(s) | 1657 |
| Fnu4HI | GCNGC | 6 cut(s) | 462, 1010, 2490, 2572, 2877, 2880 |
| FokI | GGATG | 4 cut(s) | 887, 1018, 1346, 1937 |
| Fsp4HI | GCNGC | 6 cut(s) | 462, 1010, 2490, 2572, 2877, 2880 |
| FspBI | CTAG | 8 cut(s) | 546, 567, 744, 894, 1013, 1665, 2675, 2916 |
| GluI | GCNGC | 6 cut(s) | 462, 1010, 2490, 2572, 2877, 2880 |
| GsaI | CCCAGC | 4 cut(s) | 873, 1803, 2765, 2886 |
| GsuI | CTGGAG | 1 cut(s) | 2198 |
| HaeIII | GGCC | 6 cut(s) | 316, 455, 724, 1027, 1901, 2598 |
| HapII | CCGG | 6 cut(s) | 61, 83, 620, 1000, 1142, 1653 |
| HincII | GTYRAC | 1 cut(s) | 1018 |
| HindII | GTYRAC | 1 cut(s) | 1018 |
| HinfI | GANTC | 9 cut(s) | 57, 216, 669, 908, 1094, 1193, 1873, 2090, 2753 |
| HpaII | CCGG | 6 cut(s) | 61, 83, 620, 1000, 1142, 1653 |
| HphI | GGTGA | 1 cut(s) | 1636 |
| Hpy166II | GTNNAC | 6 cut(s) | 1018, 1267, 1570, 1658, 2668, 2732 |
| Hpy8I | GTNNAC | 6 cut(s) | 1018, 1267, 1570, 1658, 2668, 2732 |
| HpyAV | CCTTC | 6 cut(s) | 199, 429, 1241, 2255, 2681, 2745 |
| HpyCH4III | ACNGT | 3 cut(s) | 1837, 2106, 2191 |
| HpyCH4IV | ACGT | 5 cut(s) | 170, 886, 1263, 1541, 2787 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 171, 363, 461, 470, 647, 1463, 2515 |
| HpyF3I | CTNAG | 3 cut(s) | 719, 1526, 2271 |
| HpySE526I | ACGT | 5 cut(s) | 170, 886, 1263, 1541, 2787 |
| Kpn2I | TCCGGA | 1 cut(s) | 60 |
| Ksp22I | TGATCA | 3 cut(s) | 342, 447, 1927 |
| Kzo9I | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| LmnI | GCTCC | 4 cut(s) | 470, 1373, 1589, 2217 |
| Lsp1109I | GCAGC | 4 cut(s) | 996, 2476, 2583, 2891 |
| LweI | GCATC | 8 cut(s) | 996, 1206, 1318, 1324, 1602, 1786, 2422, 2887 |
| MaeI | CTAG | 8 cut(s) | 546, 567, 744, 894, 1013, 1665, 2675, 2916 |
| MaeII | ACGT | 5 cut(s) | 170, 886, 1263, 1541, 2787 |
| MaeIII | GTNAC | 7 cut(s) | 1036, 1642, 1673, 1712, 1945, 1983, 2309 |
| MalI | GATC | 8 cut(s) | 344, 449, 602, 717, 1126, 1929, 2340, 2499 |
| MboI | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| MboII | GAAGA | 8 cut(s) | 66, 788, 1091, 2036, 2253, 2691, 2936, 2951 |
| MflI | RGATCY | 2 cut(s) | 2338, 2497 |
| MhlI | GDGCHC | 2 cut(s) | 1572, 2272 |
| MlyI | GAGTC | 4 cut(s) | 51, 210, 1103, 2762 |
| MmeI | TCCRAC | 4 cut(s) | 79, 325, 1614, 1649 |
| Mph1103I | ATGCAT | 4 cut(s) | 643, 1411, 1459, 2396 |
| MroI | TCCGGA | 1 cut(s) | 60 |
| MroXI | GAANNNNTTC | 2 cut(s) | 188, 668 |
| MslI | CAYNNNNRTG | 4 cut(s) | 270, 1043, 1107, 2063 |
| MspA1I | CMGCKG | 2 cut(s) | 2275, 2882 |
| MspI | CCGG | 6 cut(s) | 61, 83, 620, 1000, 1142, 1653 |
| MspR9I | CCNGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| Mva1269I | GAATGC | 5 cut(s) | 643, 946, 1855, 2149, 2371 |
| MvaI | CCWGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 171, 363, 461, 470, 647, 1463, 2515 |
| NcoI | CCATGG | 1 cut(s) | 1573 |
| NdeI | CATATG | 1 cut(s) | 2390 |
| NdeII | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| NheI | GCTAGC | 1 cut(s) | 743 |
| NlaIV | GGNNCC | 4 cut(s) | 630, 846, 2229, 2832 |
| NmeAIII | GCCGAG | 1 cut(s) | 382 |
| NmuCI | GTSAC | 3 cut(s) | 1036, 1642, 1673 |
| NsiI | ATGCAT | 4 cut(s) | 643, 1411, 1459, 2396 |
| NspI | RCATGY | 3 cut(s) | 1774, 1974, 2855 |
| NspV | TTCGAA | 2 cut(s) | 830, 1815 |
| OliI | CACNNNNGTG | 1 cut(s) | 1043 |
| PaeI | GCATGC | 1 cut(s) | 1974 |
| PceI | AGGCCT | 2 cut(s) | 455, 1027 |
| PciI | ACATGT | 1 cut(s) | 2851 |
| PctI | GAATGC | 5 cut(s) | 643, 946, 1855, 2149, 2371 |
| PdmI | GAANNNNTTC | 2 cut(s) | 188, 668 |
| PfeI | GAWTC | 5 cut(s) | 669, 908, 1193, 1873, 2090 |
| PflFI | GACNNNGTC | 1 cut(s) | 1640 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 323 |
| PinAI | ACCGGT | 1 cut(s) | 1652 |
| PkrI | GCNGC | 6 cut(s) | 463, 1011, 2491, 2573, 2878, 2881 |
| PleI | GAGTC | 4 cut(s) | 51, 210, 1102, 2761 |
| PpsI | GAGTC | 4 cut(s) | 51, 210, 1102, 2761 |
| Ppu21I | YACGTR | 2 cut(s) | 887, 1264 |
| PpuMI | RGGWCCY | 1 cut(s) | 255 |
| PscI | ACATGT | 1 cut(s) | 2851 |
| PshBI | ATTAAT | 2 cut(s) | 1553, 2457 |
| Psp1406I | AACGTT | 1 cut(s) | 2787 |
| Psp5II | RGGWCCY | 1 cut(s) | 255 |
| Psp6I | CCWGG | 4 cut(s) | 1155, 1196, 2493, 2947 |
| PspEI | GGTNACC | 1 cut(s) | 1642 |
| PspFI | CCCAGC | 4 cut(s) | 869, 1799, 2761, 2882 |
| PspGI | CCWGG | 4 cut(s) | 1155, 1196, 2493, 2947 |
| PspN4I | GGNNCC | 4 cut(s) | 630, 846, 2229, 2832 |
| PspPI | GGNCC | 3 cut(s) | 255, 2668, 2830 |
| PspPPI | RGGWCCY | 1 cut(s) | 255 |
| PstI | CTGCAG | 1 cut(s) | 2573 |
| PstNI | CAGNNNCTG | 3 cut(s) | 258, 337, 1343 |
| PsuI | RGATCY | 2 cut(s) | 2338, 2497 |
| PsyI | GACNNNGTC | 1 cut(s) | 1640 |
| PvuII | CAGCTG | 2 cut(s) | 2275, 2882 |
| RsaI | GTAC | 5 cut(s) | 736, 866, 1262, 1268, 1775 |
| RsaNI | GTAC | 5 cut(s) | 735, 865, 1261, 1267, 1774 |
| RseI | CAYNNNNRTG | 4 cut(s) | 270, 1043, 1107, 2063 |
| SatI | GCNGC | 6 cut(s) | 462, 1010, 2490, 2572, 2877, 2880 |
| Sau3AI | GATC | 8 cut(s) | 342, 447, 600, 715, 1124, 1927, 2338, 2497 |
| Sau96I | GGNCC | 3 cut(s) | 255, 2668, 2830 |
| ScaI | AGTACT | 1 cut(s) | 736 |
| SchI | GAGTC | 4 cut(s) | 51, 210, 1103, 2762 |
| ScrFI | CCNGG | 4 cut(s) | 1157, 1198, 2495, 2949 |
| SduI | GDGCHC | 2 cut(s) | 1572, 2272 |
| SfaNI | GCATC | 8 cut(s) | 996, 1206, 1318, 1324, 1602, 1786, 2422, 2887 |
| SfcI | CTRYAG | 2 cut(s) | 912, 2569 |
| SfuI | TTCGAA | 2 cut(s) | 830, 1815 |
| SinI | GGWCC | 3 cut(s) | 255, 2668, 2830 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 270, 1043, 1107, 2063 |
| SmlI | CTYRAG | 2 cut(s) | 1376, 2750 |
| SmoI | CTYRAG | 2 cut(s) | 1376, 2750 |
| SpeI | ACTAGT | 1 cut(s) | 545 |
| SphI | GCATGC | 1 cut(s) | 1974 |
| SseBI | AGGCCT | 2 cut(s) | 455, 1027 |
| SsiI | CCGC | 3 cut(s) | 461, 1331, 2877 |
| SspI | AATATT | 1 cut(s) | 2869 |
| SspMI | CTAG | 8 cut(s) | 546, 567, 744, 894, 1013, 1665, 2675, 2916 |
| StuI | AGGCCT | 2 cut(s) | 455, 1027 |
| StyD4I | CCNGG | 4 cut(s) | 1155, 1196, 2493, 2947 |
| StyI | CCWWGG | 3 cut(s) | 145, 632, 1573 |
| TaaI | ACNGT | 3 cut(s) | 1837, 2106, 2191 |
| TaiI | ACGT | 5 cut(s) | 173, 889, 1266, 1544, 2790 |
| TaqI | TCGA | 6 cut(s) | 603, 672, 830, 1049, 1436, 1815 |
| TaqII | GACCGA | 1 cut(s) | 2711 |
| TatI | WGTACW | 3 cut(s) | 734, 1266, 1773 |
| TauI | GCSGC | 2 cut(s) | 464, 2879 |
| TfiI | GAWTC | 5 cut(s) | 669, 908, 1193, 1873, 2090 |
| TscAI | CASTG | 2 cut(s) | 718, 2196 |
| TseFI | GTSAC | 3 cut(s) | 1036, 1642, 1673 |
| TseI | GCWGC | 4 cut(s) | 1009, 2489, 2571, 2879 |
| Tsp45I | GTSAC | 3 cut(s) | 1036, 1642, 1673 |
| TspGWI | ACGGA | 2 cut(s) | 429, 1602 |
| TspRI | CASTG | 2 cut(s) | 718, 2196 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1640 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 323 |
| VneI | GTGCAC | 1 cut(s) | 1568 |
| VpaK11BI | GGWCC | 3 cut(s) | 255, 2668, 2830 |
| VspI | ATTAAT | 2 cut(s) | 1553, 2457 |
| XapI | RAATTY | 8 cut(s) | 609, 727, 1069, 1243, 1957, 2251, 2775, 2839 |
| XceI | RCATGY | 3 cut(s) | 1774, 1974, 2855 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1834 |
| XmiI | GTMKAC | 1 cut(s) | 1657 |
| XmnI | GAANNNNTTC | 2 cut(s) | 188, 668 |
| XspI | CTAG | 8 cut(s) | 546, 567, 744, 894, 1013, 1665, 2675, 2916 |
| ZrmI | AGTACT | 1 cut(s) | 736 |
| Zsp2I | ATGCAT | 4 cut(s) | 643, 1411, 1459, 2396 |