Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000202

Physical Location & Seq

Genomic Coordinates Reverse (-)

23527448 .. 23528215

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G018370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGACTAAGGTGAAGGATATAGGGGAGCTTCTGAAGCCGGATCTGAAAATGGGGGCGCCGCAAGAAGAAACTGGCAAATCTCCGGAGATAATCGAACCTAAAGTTTTGTTAAAAGTTTTTGGATTTGATAAGGAAGCCAAGGAGATTGAGAACCTGCTGGTGGGGGGTGCTACTTCTAACAGTACAAGATTTACGGCAATTGGGGTAGTGGGAATTGCTGGTGCGGGTAAGACAACCCTGGTGCAGAAGGTTTTGGAGAGAGAGGGAGTGAAGAAGAGGTTTAGTACTATACTTTGGTTGCCCTTTTATGGTATAAGTGAAGGAGAACAACAATACAGTAAGCTCGGCTTTAAGACATGTATTCTTGACAAGGGGGGCAAATCCCCTGATGACAAGATTGTTGGCCTGGGGAAGCTCTTGGAAAGGCTGAAGCAACTGTTATCGGGTAAAAGGTATCTGATTGTGTTGGATGATGTGTGTCATCAGCACATTAACATTATGGAACGCTTAGTCAGTGGGTTGCCTAAAGAAAGTGGCGGCGCTGTCATTGTCACTAGCAGATTGAAGGAAGTGGCTCAAAAGATTGGAGAACAACAATACCTGATTCCTGTTGTGTCACAGGAAGATATTTGCTCGAAAATAATTGAGGAGACTATACAGAGTGATGAGGGATTGCCAATGACTAAGAAGGAGATGAAGGATCAATGCCATGGTCTACCGTTGGTTGCAGAAACACTAGCACATTTTATTCCTCAAATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat Lectin_C NB-ARC VWD

Protein Analysis

255

Amino Acids

28.07

Weight (kDa)

8.21

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	64 - 202	2.8e-20	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28130
fragaria_vesca	FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica	MD17G1216600.v1.1
prunus_persica	Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis	pycom17g22110
rosa_chinensis	RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata	RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora	Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa	Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha	Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana	Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	718
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	3 cut(s)	62, 227, 540
AclWI	GGATC	2 cut(s)	51, 711
AcuI	CTGAAG	2 cut(s)	56, 452
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	2 cut(s)	187, 289
AfiI	CCNNNNNNNGG	2 cut(s)	163, 311
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	240, 408
AluBI	AGCT	3 cut(s)	31, 346, 418
AluI	AGCT	3 cut(s)	31, 346, 418
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	2 cut(s)	51, 711
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	1 cut(s)	406
AspLEI	GCGC	2 cut(s)	61, 545
AsuHPI	GGTGA	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	2 cut(s)	242, 410
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	558, 740
BfoI	RGCGCY	2 cut(s)	62, 546
BfuAI	ACCTGC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	62, 541
BlsI	GCNGC	2 cut(s)	63, 542
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	242, 410
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	242, 410
BpiI	GAAGAC	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	141, 240, 409, 712
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 311
Bse1I	ACTGG	1 cut(s)	79
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	242, 410
BseDI	CCNNGG	4 cut(s)	141, 240, 409, 712
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	163, 311
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	665
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	41, 86
BslI	CCNNNNNNNGG	2 cut(s)	163, 311
BsmAI	GTCTC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	43, 703
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	3 cut(s)	62, 227, 540
BspANI	GGCC	1 cut(s)	408
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	51, 711
BspT107I	GGYRCC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	4 cut(s)	141, 240, 409, 712
BssMI	GATC	2 cut(s)	43, 703
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	141, 712
Bst2UI	CCWGG	2 cut(s)	242, 410
Bst4CI	ACNGT	4 cut(s)	185, 341, 441, 723
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	9, 511, 687
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	1 cut(s)	478
BstH2I	RGCGCY	2 cut(s)	62, 546
BstHHI	GCGC	2 cut(s)	61, 545
BstKTI	GATC	2 cut(s)	46, 706
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	2 cut(s)	43, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	2 cut(s)	242, 410
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	240, 408
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	523
BveI	ACCTGC	1 cut(s)	165
CfoI	GCGC	2 cut(s)	61, 545
Csp6I	GTAC	2 cut(s)	186, 288
CviAII	CATG	2 cut(s)	360, 713
CviJI	RGCY	9 cut(s)	31, 40, 140, 346, 351, 408, 418, 430, 578
CviKI_1	RGCY	9 cut(s)	31, 40, 140, 346, 351, 408, 418, 430, 578
CviQI	GTAC	2 cut(s)	186, 288
DdeI	CTNAG	3 cut(s)	9, 511, 687
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	2 cut(s)	45, 705
DpnII	GATC	2 cut(s)	43, 703
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	141, 712
Eco57I	CTGAAG	2 cut(s)	56, 452
EcoRII	CCWGG	2 cut(s)	240, 408
EcoT14I	CCWWGG	2 cut(s)	141, 712
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	141, 712
FaeI	CATG	2 cut(s)	363, 716
FaiI	YATR	9 cut(s)	23, 293, 312, 317, 361, 503, 659, 714, 766
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	2 cut(s)	359, 712
FauI	CCCGC	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	718
Fnu4HI	GCNGC	2 cut(s)	62, 541
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	62, 541
FspBI	CTAG	2 cut(s)	558, 740
GlaI	GCGC	2 cut(s)	60, 544
GluI	GCNGC	2 cut(s)	62, 541
HaeII	RGCGCY	2 cut(s)	62, 546
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	2 cut(s)	41, 86
HhaI	GCGC	2 cut(s)	61, 545
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	363, 716
Hin6I	GCGC	2 cut(s)	59, 543
HinP1I	GCGC	2 cut(s)	59, 543
HinfI	GANTC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	41, 86
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	719
Hpy188I	TCNGA	3 cut(s)	36, 48, 462
Hpy188III	TCNNGA	2 cut(s)	86, 368
Hpy8I	GTNNAC	1 cut(s)	719
HpyAV	CCTTC	6 cut(s)	10, 244, 317, 562, 685, 694
HpyCH4III	ACNGT	4 cut(s)	185, 341, 441, 723
HpyCH4V	TGCA	2 cut(s)	247, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	3 cut(s)	9, 511, 687
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	363, 716
HspAI	GCGC	2 cut(s)	59, 543
KasI	GGCGCC	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	43, 703
LmnI	GCTCC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	558, 740
MaeIII	GTNAC	2 cut(s)	553, 618
MalI	GATC	2 cut(s)	45, 705
MboI	GATC	2 cut(s)	43, 703
MboII	GAAGA	5 cut(s)	16, 80, 286, 289, 638
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	3 cut(s)	201, 216, 645
Mly113I	GGCGCC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	5 cut(s)	259, 273, 643, 664, 765
MroI	TCCGGA	1 cut(s)	85
MseI	TTAA	3 cut(s)	113, 354, 495
MspI	CCGG	2 cut(s)	41, 86
MspR9I	CCNGG	2 cut(s)	242, 410
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	242, 410
MwoI	GCNNNNNNNGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	2 cut(s)	43, 703
NlaIII	CATG	2 cut(s)	363, 716
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	2 cut(s)	553, 618
NspI	RCATGY	1 cut(s)	363
PciI	ACATGT	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	63, 542
PluTI	GGCGCC	1 cut(s)	62
PscI	ACATGT	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	240, 408
PspGI	CCWGG	2 cut(s)	240, 408
PspN4I	GGNNCC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	187, 289
RsaNI	GTAC	2 cut(s)	186, 288
SaqAI	TTAA	3 cut(s)	113, 354, 495
SatI	GCNGC	2 cut(s)	62, 541
Sau3AI	GATC	2 cut(s)	43, 703
ScaI	AGTACT	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	242, 410
SfoI	GGCGCC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	201, 216, 645
SsiI	CCGC	3 cut(s)	62, 227, 540
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	558, 740
StyD4I	CCNGG	2 cut(s)	240, 408
StyI	CCWWGG	2 cut(s)	141, 712
TaaI	ACNGT	4 cut(s)	185, 341, 441, 723
TaqI	TCGA	2 cut(s)	96, 638
TasI	AATT	3 cut(s)	201, 216, 645
TatI	WGTACW	2 cut(s)	185, 287
TauI	GCSGC	2 cut(s)	64, 543
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	3 cut(s)	113, 354, 495
Tru9I	TTAA	3 cut(s)	113, 354, 495
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	553, 618
Tsp45I	GTSAC	2 cut(s)	553, 618
TspDTI	ATGAA	2 cut(s)	17, 713
TspRI	CASTG	1 cut(s)	523
XceI	RCATGY	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	718
XspI	CTAG	2 cut(s)	558, 740
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.