Rh2DG244900

Diacylglycerol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000202
Physical Location & Seq
Reverse (-)
24988659 .. 24989396
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG244900.1

Sequence Viewer

Length: 630 bp
ATGGGGGCTCTGCTAATAGAAATTGGTAATCCTCCGGAGATAACCGAACGGTCCGAACCTAAAGTTTTTGGATTTGATAAGGAAGCCAAGGAGATTGAGAACCTGCTGGTTGGGGGTGCTAGTTCTAGCAGTACAAGATTTACGGCAATTGGGGTAGTGGGAATTGGTGGTGCGGGTAAGACAACCCTGGTGCAGAAAGTTTTGGAGAGAGAGGGAGTGAAGGAGAGGTTTAGTACTATACTTTGGTTGCCCTTTTATGGTATAAGTGAAGGAGAACAACAATACAGTAAGCTCGGCTTTAAGACATGTATTCTTGACAAGGGGGGCAAATCCCCTGATGAGAAGATTGTTGGCCTGGGGGATGAGAAGATTGTTGGCCTGGGGAAGCTCTTGGAAAGGCTGAAGCAACTGTTATCGGGTAAAAGATTGAAGGAAGTGGCTCAAAAGATTGGAGAACAACAATACCTGATTCCTGTTGAGGCACAGGAAGATATTTGCTCGAAAATAATTGAGGAGACTATACAGAGTGATGAGGGATTGCCAATGACTAAGAAGGAAATGAAGGATCAATGCCATGGTCTACCGTTGGTTGCAGAAACACTAGCACATTTTATTCCTCAAATGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAGK_acc DAGK_cat NB-ARC

Protein Analysis

209

Amino Acids

22.87

Weight (kDa)

5.45

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 46 - 84 2.5e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 580
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 2 cut(s) 133, 235
AfiI CCNNNNNNNGG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 1 cut(s) 430
AjnI CCWGG 3 cut(s) 186, 354, 378
AluBI AGCT 2 cut(s) 292, 388
AluI AGCT 2 cut(s) 292, 388
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 1 cut(s) 573
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 2 cut(s) 352, 376
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 3 cut(s) 188, 356, 380
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 3 cut(s) 120, 126, 602
BfuAI ACCTGC 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 3 cut(s) 188, 356, 380
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmrFI CCNGG 3 cut(s) 188, 356, 380
BsaJI CCNNGG 5 cut(s) 87, 186, 355, 379, 574
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 3 cut(s) 188, 356, 380
BseDI CCNNGG 5 cut(s) 87, 186, 355, 379, 574
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 212
BshFI GGCC 2 cut(s) 354, 378
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 509
BsnI GGCC 2 cut(s) 354, 378
Bsp1286I GDGCHC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 565
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 1 cut(s) 173
BspANI GGCC 2 cut(s) 354, 378
BspEI TCCGGA 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 573
BssECI CCNNGG 5 cut(s) 87, 186, 355, 379, 574
BssMI GATC 1 cut(s) 565
BssT1I CCWWGG 2 cut(s) 87, 574
Bst2UI CCWGG 3 cut(s) 188, 356, 380
Bst4CI ACNGT 4 cut(s) 51, 287, 411, 585
BstDEI CTNAG 1 cut(s) 549
BstDSI CCRYGG 1 cut(s) 574
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 1 cut(s) 568
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 1 cut(s) 565
BstNI CCWGG 3 cut(s) 188, 356, 380
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 3 cut(s) 186, 354, 378
BsuRI GGCC 2 cut(s) 354, 378
BtgI CCRYGG 1 cut(s) 574
BtsCI GGATG 1 cut(s) 367
BveI ACCTGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 51
CpoI CGGWCCG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 132, 234
CspI CGGWCCG 1 cut(s) 51
CviAII CATG 2 cut(s) 306, 575
CviJI RGCY 9 cut(s) 8, 86, 292, 297, 354, 378, 388, 400, 440
CviKI_1 RGCY 9 cut(s) 8, 86, 292, 297, 354, 378, 388, 400, 440
CviQI GTAC 2 cut(s) 132, 234
DdeI CTNAG 1 cut(s) 549
DpnI GATC 1 cut(s) 567
DpnII GATC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 87, 574
Eco24I GRGCYC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 422
EcoRII CCWGG 3 cut(s) 186, 354, 378
EcoT14I CCWWGG 2 cut(s) 87, 574
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 87, 574
FaeI CATG 2 cut(s) 309, 578
FaiI YATR 7 cut(s) 239, 258, 263, 307, 521, 576, 628
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 2 cut(s) 305, 574
FauI CCCGC 1 cut(s) 166
FblI GTMKAC 1 cut(s) 580
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 10
FspBI CTAG 3 cut(s) 120, 126, 602
HaeIII GGCC 2 cut(s) 354, 378
HapII CCGG 1 cut(s) 35
Hin1II CATG 2 cut(s) 309, 578
HinfI GANTC 1 cut(s) 469
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 35, 314
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 5 cut(s) 214, 263, 424, 547, 556
HpyCH4III ACNGT 4 cut(s) 51, 287, 411, 585
HpyCH4V TGCA 2 cut(s) 193, 593
HpyF3I CTNAG 1 cut(s) 549
Hsp92II CATG 2 cut(s) 309, 578
Kpn2I TCCGGA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 565
MaeI CTAG 3 cut(s) 120, 126, 602
MalI GATC 1 cut(s) 567
MboI GATC 1 cut(s) 565
MboII GAAGA 3 cut(s) 355, 379, 500
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 4 cut(s) 21, 147, 162, 507
MnlI CCTC 7 cut(s) 42, 205, 219, 472, 505, 526, 627
MroI TCCGGA 1 cut(s) 34
MseI TTAA 1 cut(s) 300
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 188, 356, 380
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 3 cut(s) 188, 356, 380
NcoI CCATGG 1 cut(s) 574
NdeII GATC 1 cut(s) 565
NlaIII CATG 2 cut(s) 309, 578
NmeAIII GCCGAG 1 cut(s) 273
NspI RCATGY 1 cut(s) 309
PciI ACATGT 1 cut(s) 305
PfeI GAWTC 1 cut(s) 469
PscI ACATGT 1 cut(s) 305
Psp6I CCWGG 3 cut(s) 186, 354, 378
PspGI CCWGG 3 cut(s) 186, 354, 378
PspPI GGNCC 1 cut(s) 51
RsaI GTAC 2 cut(s) 133, 235
RsaNI GTAC 2 cut(s) 132, 234
Rsr2I CGGWCCG 1 cut(s) 51
RsrII CGGWCCG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 565
Sau96I GGNCC 1 cut(s) 51
ScaI AGTACT 1 cut(s) 235
ScrFI CCNGG 3 cut(s) 188, 356, 380
SduI GDGCHC 1 cut(s) 10
SetI ASST 6 cut(s) 61, 105, 230, 294, 390, 468
SinI GGWCC 1 cut(s) 51
Sse9I AATT 4 cut(s) 21, 147, 162, 507
SsiI CCGC 1 cut(s) 173
SspMI CTAG 3 cut(s) 120, 126, 602
StyD4I CCNGG 3 cut(s) 186, 354, 378
StyI CCWWGG 2 cut(s) 87, 574
TaaI ACNGT 4 cut(s) 51, 287, 411, 585
TaqI TCGA 1 cut(s) 500
TasI AATT 4 cut(s) 21, 147, 162, 507
TatI WGTACW 2 cut(s) 131, 233
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TspDTI ATGAA 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 51
XceI RCATGY 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 580
XspI CTAG 3 cut(s) 120, 126, 602
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.