Rroxscaffold_2G00131130

Diacylglycerol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000202
Physical Location & Seq
Forward (+)
67680847 .. 67682522
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131130.1

Sequence Viewer

Length: 1029 bp
ATGGCATTGGATGTCGCTGAATTCCTGTGGAACAAGTTCTTGAAGGCTCTGGCAGAGCTAGAGTCTGAATCTAATTCAGGTTTTGTTACCATCCCTCTCTTCAAATCAGCAATAAAAGATCTCGTGTCTAAGTTCAAAGAAATCAAAGATTTTGTGAATGAGAGAGATATAATGCCGGAACCTTATACCTTCTCTGAAACTATCGATCTGTTCTACGACCTCAACGATGCATTGGCCGAGTGCCGAGTCATCACACACGAGTGCAAAGAAATTAAGAATAAGTTGTTAAGCCTCAACCCTCGAAGAGCTTATTCTCTCACCACCATCAAGAATAAGCTGAAAACAATTGAAGATGAGCTTAGGAGGTTGGCGGCGTCACAGAAAGAAATTGGTTATCCGACTTATCCCCTTGTAATGACTGGACCTATACCTTCATCAGAAGTTTTCGGATTTGAGGATCAATCAAAGGAGATCGAGGAGTTGCTAGTTGGGCGTTCTAGTTCTAGTTCGAGTGGCGTAACATTTACGGAAATTGGGGTAATTGGCATTGCTGGCGTGGGTAAGACTACCCTGGTACAGAAGGTTTTGGAGAGCCAGAAGGTGAAAAAGAAGTTTGGTCGTATACTTTGGTTACCCTTTTCGGGTATAAGGGAAGGAGAACAACAATATAGTAGGTTCAGTTTTGAGACGTGTATCCTTGATAATTCGGGCAAAACCTTAGAGGCGAGGATTGTCGGTCTTGATAGTCTCCTGGAAAAGCTGCGCCAACTGTTATCGGATCAAAGCTATTTGATTGTGTTGGATGATGTGTGTTTTCAGCTCATTAACATTATGGAACGCTTAGTCAGTGGATTACCTAAGGCTGGTGGTGCTGTCATTGTCACTAGTAGATTGAAGGAAGTGGCTCAAAGGCTTGGGAAACACCATCACTTTGTTTGTGTTAAGCCTCTGCCAGGAAAAGATTGCTCGTGTCTATTTGAGAAGATCATTGAGAAAGAGAAACAATTGTCAAGCATCTCACCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAGK_acc DAGK_cat NB-ARC

Protein Analysis

342

Amino Acids

38.36

Weight (kDa)

6.92

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 177 - 333 1.6e-19 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 622
AciI CCGC 1 cut(s) 371
AclWI GGATC 2 cut(s) 465, 786
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 1 cut(s) 576
AfiI CCNNNNNNNGG 3 cut(s) 641, 863, 953
AflIII ACRYGT 1 cut(s) 689
AgsI TTSAA 5 cut(s) 43, 103, 136, 350, 895
AhlI ACTAGT 1 cut(s) 884
AjiI CACGTC 1 cut(s) 690
AjnI CCWGG 4 cut(s) 570, 750, 952, 1021
AleI CACNNNNGTG 1 cut(s) 259
AluBI AGCT 7 cut(s) 58, 308, 337, 358, 760, 786, 820
AluI AGCT 7 cut(s) 58, 308, 337, 358, 760, 786, 820
Alw26I GTCTC 2 cut(s) 680, 752
AlwI GGATC 2 cut(s) 465, 786
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 760
ApoI RAATTY 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 765
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 310, 613, 1011
AvaII GGWCC 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 858
BauI CACGAG 3 cut(s) 122, 257, 967
BbvI GCAGC 1 cut(s) 747
BccI CCATC 3 cut(s) 98, 332, 933
BciT130I CCWGG 4 cut(s) 572, 752, 954, 1023
BciVI GTATCC 1 cut(s) 704
BcoDI GTCTC 2 cut(s) 680, 752
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 5 cut(s) 59, 485, 498, 504, 885
BfuI GTATCC 1 cut(s) 704
BglII AGATCT 1 cut(s) 118
BisI GCNGC 2 cut(s) 372, 761
BlsI GCNGC 2 cut(s) 373, 762
Bme1390I CCNGG 4 cut(s) 572, 752, 954, 1023
Bme18I GGWCC 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 4 cut(s) 572, 752, 954, 1023
BmsI GCATC 2 cut(s) 217, 1023
Bpu10I CCTNAGC 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 570
Bsc4I CCNNNNNNNGG 3 cut(s) 641, 863, 953
Bse1I ACTGG 1 cut(s) 424
Bse21I CCTNAGG 1 cut(s) 858
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 4 cut(s) 572, 752, 954, 1023
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 3 cut(s) 16, 90, 808
BseLI CCNNNNNNNGG 3 cut(s) 641, 863, 953
BseMI GCAATG 1 cut(s) 546
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 1 cut(s) 747
BshFI GGCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 204
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 641, 863, 953
BsmAI GTCTC 2 cut(s) 680, 752
BsmBI CGTCTC 1 cut(s) 680
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 6 cut(s) 118, 205, 457, 471, 778, 984
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 236
BspDI ATCGAT 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 465, 786
BspQI GCTCTTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 6 cut(s) 118, 205, 457, 471, 778, 984
BssNAI GTATAC 1 cut(s) 623
BssNI GRCGYC 1 cut(s) 374
BssSI CACGAG 3 cut(s) 122, 257, 967
Bst1107I GTATAC 1 cut(s) 623
Bst2BI CACGAG 3 cut(s) 122, 257, 967
Bst2UI CCWGG 4 cut(s) 572, 752, 954, 1023
Bst4CI ACNGT 1 cut(s) 771
Bst6I CTCTTC 2 cut(s) 104, 298
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 5 cut(s) 129, 359, 718, 841, 858
BstEII GGTNACC 1 cut(s) 630
BstENI CCTNNNNNAGG 1 cut(s) 951
BstF5I GGATG 3 cut(s) 16, 90, 808
BstHHI GCGC 1 cut(s) 765
BstKTI GATC 6 cut(s) 121, 208, 460, 474, 781, 987
BstMAI GTCTC 2 cut(s) 680, 752
BstMBI GATC 6 cut(s) 118, 205, 457, 471, 778, 984
BstMWI GCNNNNNNNGC 3 cut(s) 490, 552, 869
BstNI CCWGG 4 cut(s) 572, 752, 954, 1023
BstPI GGTNACC 1 cut(s) 630
BstSCI CCNGG 4 cut(s) 570, 750, 952, 1021
BstV1I GCAGC 1 cut(s) 747
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BstZ17I GTATAC 1 cut(s) 623
Bsu15I ATCGAT 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 858
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 1 cut(s) 236
BsuTUI ATCGAT 1 cut(s) 204
BtrI CACGTC 1 cut(s) 690
BtsCI GGATG 3 cut(s) 16, 90, 808
BtsIMutI CAGTG 1 cut(s) 853
Cac8I GCNNGC 1 cut(s) 553
CfoI GCGC 1 cut(s) 765
Cfr13I GGNCC 1 cut(s) 422
ClaI ATCGAT 1 cut(s) 204
CseI GACGC 1 cut(s) 363
CsiI ACCWGGT 1 cut(s) 1021
Csp6I GTAC 1 cut(s) 575
CviQI GTAC 1 cut(s) 575
DdeI CTNAG 5 cut(s) 129, 359, 718, 841, 858
DpnI GATC 6 cut(s) 120, 207, 459, 473, 780, 986
DpnII GATC 6 cut(s) 118, 205, 457, 471, 778, 984
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 104, 298
EarI CTCTTC 2 cut(s) 104, 298
Eco47I GGWCC 1 cut(s) 422
Eco81I CCTNAGG 1 cut(s) 858
Eco91I GGTNACC 1 cut(s) 630
EcoNI CCTNNNNNAGG 1 cut(s) 951
EcoO65I GGTNACC 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 4 cut(s) 570, 750, 952, 1021
EcoT22I ATGCAT 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 680
FaiI YATR 7 cut(s) 170, 186, 428, 623, 647, 669, 833
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 2 cut(s) 372, 761
FokI GGATG 3 cut(s) 23, 77, 815
Fsp4HI GCNGC 2 cut(s) 372, 761
FspBI CTAG 5 cut(s) 59, 485, 498, 504, 885
GlaI GCGC 1 cut(s) 764
GluI GCNGC 2 cut(s) 372, 761
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 765
Hin1I GRCGYC 1 cut(s) 374
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HinfI GANTC 3 cut(s) 62, 68, 246
HpaII CCGG 1 cut(s) 176
HphI GGTGA 3 cut(s) 310, 613, 1011
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 6 cut(s) 67, 196, 399, 439, 449, 778
Hpy188III TCNNGA 3 cut(s) 40, 328, 740
Hpy8I GTNNAC 1 cut(s) 623
HpyAV CCTTC 7 cut(s) 37, 199, 441, 574, 592, 647, 889
HpyCH4III ACNGT 1 cut(s) 771
HpyCH4IV ACGT 1 cut(s) 689
HpyCH4V TGCA 2 cut(s) 230, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 490, 552, 869
HpyF3I CTNAG 5 cut(s) 129, 359, 718, 841, 858
HpySE526I ACGT 1 cut(s) 689
Hsp92I GRCGYC 1 cut(s) 374
HspAI GCGC 1 cut(s) 763
Kzo9I GATC 6 cut(s) 118, 205, 457, 471, 778, 984
LguI GCTCTTC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 747
LweI GCATC 2 cut(s) 217, 1023
MabI ACCWGGT 1 cut(s) 1021
MaeI CTAG 5 cut(s) 59, 485, 498, 504, 885
MaeII ACGT 1 cut(s) 689
MaeIII GTNAC 5 cut(s) 85, 375, 517, 630, 880
MalI GATC 6 cut(s) 120, 207, 459, 473, 780, 986
MboI GATC 6 cut(s) 118, 205, 457, 471, 778, 984
MboII GAAGA 4 cut(s) 91, 315, 362, 994
MfeI CAATTG 2 cut(s) 345, 1004
MflI RGATCY 1 cut(s) 118
MluCI AATT 9 cut(s) 20, 73, 270, 345, 387, 531, 540, 703, 1004
MlyI GAGTC 2 cut(s) 71, 255
MmeI TCCRAC 2 cut(s) 422, 780
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 4 cut(s) 273, 287, 825, 942
MslI CAYNNNNRTG 1 cut(s) 259
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 4 cut(s) 572, 752, 954, 1023
MunI CAATTG 2 cut(s) 345, 1004
MvaI CCWGG 4 cut(s) 572, 752, 954, 1023
MwoI GCNNNNNNNGC 3 cut(s) 490, 552, 869
NdeII GATC 6 cut(s) 118, 205, 457, 471, 778, 984
NlaIV GGNNCC 1 cut(s) 180
NmeAIII GCCGAG 2 cut(s) 262, 269
NmuCI GTSAC 2 cut(s) 375, 880
NsiI ATGCAT 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 750
PkrI GCNGC 2 cut(s) 373, 762
PleI GAGTC 2 cut(s) 70, 254
PpsI GAGTC 2 cut(s) 70, 254
Psp6I CCWGG 4 cut(s) 570, 750, 952, 1021
PspEI GGTNACC 1 cut(s) 630
PspGI CCWGG 4 cut(s) 570, 750, 952, 1021
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 422
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 576
RsaNI GTAC 1 cut(s) 575
RseI CAYNNNNRTG 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 4 cut(s) 273, 287, 825, 942
SatI GCNGC 2 cut(s) 372, 761
Sau3AI GATC 6 cut(s) 118, 205, 457, 471, 778, 984
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 2 cut(s) 71, 255
ScrFI CCNGG 4 cut(s) 572, 752, 954, 1023
SexAI ACCWGGT 1 cut(s) 1021
SfaNI GCATC 2 cut(s) 217, 1023
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 884
Sse9I AATT 9 cut(s) 20, 73, 270, 345, 387, 531, 540, 703, 1004
SsiI CCGC 1 cut(s) 371
SspMI CTAG 5 cut(s) 59, 485, 498, 504, 885
StyD4I CCNGG 4 cut(s) 570, 750, 952, 1021
TaaI ACNGT 1 cut(s) 771
TaiI ACGT 1 cut(s) 692
TaqI TCGA 4 cut(s) 204, 301, 474, 509
TaqII GACCGA 1 cut(s) 725
TasI AATT 9 cut(s) 20, 73, 270, 345, 387, 531, 540, 703, 1004
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 4 cut(s) 273, 287, 825, 942
Tru9I TTAA 4 cut(s) 273, 287, 825, 942
TscAI CASTG 1 cut(s) 853
TseFI GTSAC 2 cut(s) 375, 880
TseI GCWGC 1 cut(s) 760
Tsp45I GTSAC 2 cut(s) 375, 880
TspDTI ATGAA 1 cut(s) 423
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 1 cut(s) 853
VpaK11BI GGWCC 1 cut(s) 422
XagI CCTNNNNNAGG 1 cut(s) 951
XapI RAATTY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 5 cut(s) 59, 485, 498, 504, 885
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.